%%: Scientific Computing and Imaging (SCI) Institute. %%: Updated April 15 2026 17:16 %%: Begin bibliography entries @Article{SCI:Ath2026a, author = "T. M. Athawale and K. Moreland and D. Pugmire and C. R. Johnson and P. Rosen and M. Norman and A. Georgiadou and and A. Entezari", title = "MAGIC: Marching Cubes Isosurface Uncertainty Visualization for Gaussian Uncertain Data with Spatial Correlation", journal = "TVCG", year = "2026", publisher = "IEEE", url = "https://publications.utah.edu/publications/Ath2026a/TVCG_MAGIC_Isosurface_Uncertainty_Vis.pdf", } @Article{SCI:Bid2026a, author = "T. Bidone", title = "Rethinking Contractility in Active Cytoskeletal Matter", journal = "Biophysical Journal", year = "2026", url = "https://publications.utah.edu/publications/Bid2026a/1-s2.0-S0006349526002377-main.pdf", } @Misc{SCI:Bla2026a, author = "R.T. Black and S.A. Maas and W. Wu and J. Maheshwari and T. Kolev and J.A. Weiss and M.A. Jolley", title = "An open-source computational framework for immersed fluid-structure interaction modeling using FEBio and MFEM", subtitle = "arXiv:2601.08266v1", year = "2026", url = "https://publications.utah.edu/publications/Bla2026a/2601.08266v1.pdf", } @Article{SCI:Bus2026a, author = "A. Busatto and L.C.R. Tanner and J.A. Bergquist and G. Plank and K. Gillette and A. Narayan and R.S. MacLeod", title = "Uncertainty quantification of conduction velocity in models of cardiac spread of activation", journal = "Med Biol Eng Comput", year = "2026", publisher = "Springer Nature", url = "https://publications.utah.edu/publications/Bus2026a/s11517-026-03560-w.pdf", } @Article{SCI:Bus2026b, author = "A. Busatto and J.A. Bergquist and T. Tasdizen and B.A. Steinberg and R. Ranjan and R.S. MacLeod", title = "Predicting Ventricular Arrhythmia in Myocardial Ischemia Using Deep Learning", journal = "Heart Rhythm O2", year = "2026", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Bus2026b/1-s2.0-S2666501826000644-main.pdf", } @Misc{SCI:Che2026a, author = "L. Chenarides and R. Ladislau and M. Parashar and S. Porter and J. Lane", title = "Data-usage descriptors as search metadata: the case of food security data and the National Data Platform (2015-2025)", subtitle = "Research Square Preprint", year = "2026", url = "https://publications.utah.edu/publications/Che2026a/v1_covered_4cc5d9a2-d67c-4002-8659-b0cf85900bd6.pdf", } @Misc{SCI:Cic2026a, author = "L. Cicci and S. Qian and C. Rodero and M. Strocchi and C. Corrado and F. Campos and S. Malik and A. Lee and A. Qayyum and K. Gillette and J. Isbister and R. Sy and M. Lee and M. Noseda and R. Wilkinson and G. Plank and M. Bishop and S. Niederer", title = "Personalising cardiac electrophysiology models from CT and ECG for 3D activation imaging and tissue characterisation", subtitle = "Research Square Preprint", year = "2026", url = "https://publications.utah.edu/publications/Cic2026a/v1_covered_5ce6b045-3836-45ec-a2e7-815513848e4b.pdf", } @Article{SCI:Csa2026a, author = "H. Csala and A. Arzani ", title = "Decomposed sparse modal optimization: Interpretable reduced-order modeling of unsteady flows", journal = "International Journal of Heat and Fluid Flow", volume = "117", pages = "110124", year = "2026", publisher = "Elsevier", issn = "0142-727X", url = "https://publications.utah.edu/publications/Csa2026a/1-s2.0-S0142727X25003820-main.pdf", } @Article{SCI:Cut2026a, author = "Z. Cutler and J. Wilburn and H. Shrestha and Y. Ding and B. Bollen and K. Abrar Nadib and T. He and A. McNutt and L. Harrison and A. Lex", title = "ReVISit 2: A Full Experiment Life Cycle User Study Framework", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "32", year = "2026", publisher = "IEEE", url = "https://publications.utah.edu/publications/Cut2026a/2025_vis_revisit.pdf", } @Article{SCI:Dad2026a, author = "D. Dade and J.A. Bergquist and R.S. MacLeod and B.A. Steinberg and T. Tasdizen", title = "Self-Supervised Contrastive Learning Enables Robust ECG-Based Cardiac Classification", journal = "Heart Rhythm O2", year = "2026", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Dad2026a/1-s2.0-S2666501826000280-main.pdf", } @Misc{SCI:Elh2026a, author = "M. Elhadidy and R.M. D'Souza and A. Arzani", title = "SLE-FNO: Single-Layer Extensions for Task-Agnostic Continual Learning in Fourier Neural Operators", subtitle = "arXiv:2603.20410", year = "2026", url = "https://publications.utah.edu/publications/Elh2026a/2603.20410v1.pdf", } @Misc{SCI:Eli2026a, author = "I.J. Eliza and X. Huang and A. Panta and A. Sahistan and Z. Li and A.A. Gooch and V. Pascucci", title = "Animating Petascale Time-varying Data on Commodity Hardware with LLM-assisted Scripting", subtitle = "arXiv:2603.07053v1", year = "2026", url = "https://publications.utah.edu/publications/Eli2026a/2603.07053v1.pdf", } @Misc{SCI:Far2026a, author = "S.A. Faroughi and F. Mostajeran and A. Arzani and S. Faroughi", title = "Symbolic--KAN: Kolmogorov-Arnold Networks with Discrete Symbolic Structure for Interpretable Learning", subtitle = "arXiv:2603.23854", year = "2026", url = "https://publications.utah.edu/publications/Far2026a/2603.23854v1.pdf", } @InProceedings{SCI:Ghe2026a, author = "E. Ghelichkhan and T. Tasdizen", title = "Beyond Standard Sampling: Metric-Guided Iterative Inference for Radiologists-Aligned Medical Counterfactual Generation", booktitle = "Proceedings of Machine Learning Research", year = "2026", url = "https://publications.utah.edu/publications/Ghe2026a/381_Beyond_Standard_Sampling_M.pdf", } @Misc{SCI:Haq2026a, author = "M. Rakibul Haque and V. Goudar and S. Elhabian and W.W. Pettine", title = "TimeSynth: A Framework for Uncovering Systematic Biases in Time Series Forecasting", subtitle = "arXiv:2602.11413", year = "2026", url = "https://publications.utah.edu/publications/Haq2026a/2602.11413v1.pdf", } @Article{SCI:Har2026a, author = "J. Hart and B. van Bloemen Waanders and J. Li and T. A. J. Ouermi and C. R. Johnson", title = "Hyper-differential sensitivity analysis with respect to model discrepancy: Prior distributions", journal = "International Journal for Uncertainty Quantification", volume = "16", number = "1", year = "2026", publisher = "Begell House", url = "https://publications.utah.edu/publications/Har2026a/2504.19812v2.pdf", } @Misc{SCI:His2026a, author = "M.H.H. Hisham and S. Elhabian and G. Adluru and J. Mendes and A. Arai and E. Kholmovski and R. Ranjan and E. DiBella", title = "Unrolled Reconstruction with Integrated Super-Resolution for Accelerated 3D LGE MRI", subtitle = "arXiv:2603.18309v1", year = "2026", url = "https://publications.utah.edu/publications/His2026a/2603.18309v1.pdf", } @Misc{SCI:Hua2026a, author = "Y. Huang and S.H. Wang and A.L. Bertozzi and B. Wang", title = "RMFlow: Refined Mean Flow by a Noise-Injection Step for Multimodal Generation", subtitle = "arXiv:2602.00849", year = "2026", url = "https://publications.utah.edu/publications/Hua2026a/2602.00849v1.pdf", } @Article{SCI:Kol2026a, author = "R. Kolasangiani and O. Joshi and M.A. Schwartz and T.C. Bidone", title = "All-atom simulations reveal distinct pathways for αIIbβ3 activation by biochemical vs. mechanical cues", journal = "Cellular and Molecular Life Sciences", year = "2026", publisher = "Springer Nature", url = "https://publications.utah.edu/publications/Kol2026a/s00018-026-06138-9_reference.pdf", } @Article{SCI:Kro2026a, author = "K. Kroupa and R. Kepecs and H. Zhang and J.A. Weiss and C.T. Hung and G.A. Ateshian", title = "Intrinsic Viscoelasticity of Type II Col Contributes to The Viscoelastic Response of Immature Bovine Articular Cartilage Under Unconfined Compression Stress Relaxation ", journal = "Journal of Biomechanical Engineering", year = "2026", } @InBook{SCI:Lie2026a, author = "A Liew and M Strocchi and C Rodero and KK Gillette and et. al.", title = "Leadless right ventricular pacing", title_url = "https://books.google.com/books?hl=en&lr=lang_en&id=LqiwEQAAQBAJ&oi=fnd&pg=PA69&ots=OVyzLE5J-n&sig=G7KQVANM77XkmoPfcsuZx_SnBJc#v=onepage&q&f=false", booktitle = "Advancing Our Understanding of the Cardiac Conduction System to Prevent Arrhythmias", year = "2026", publisher = "Frontiers", } @Misc{SCI:Mah2026a, author = "J. Maheshwari and W. Wu and C.N. Zelonis and S.A. Maas and K. Sunderland and Y. Barak-Corren and S. Ching and P. Sabin and A. Lasso and M. J. Gillespie and J. A. Weiss and M. A. Jolley", title = "Effect of Right Ventricular Outflow Tract Material Properties on Simulated Transcatheter Pulmonary Placement", subtitle = "arXiv:2601.05410v1", year = "2026", url = "https://publications.utah.edu/publications/Mah2026a/2601.05410v1.pdf", } @Misc{SCI:Myn2026a, author = "H. Mynampaty and N. Josephine and K.E. Isaacs and A.M. McNutt", title = "Linting Style and Substance in READMEs", subtitle = "arXiv:2603.00331", year = "2026", url = "https://publications.utah.edu/publications/Myn2026a/2603.00331v1.pdf", } @Misc{SCI:Pan2026a, author = "A. Panta and G. Scorzelli and A.A. Gooch and W. Sun and K.S. Shanks and S. Sarker and D. Bougie and K. Soloway and R. Verberg and T. Berman and G. Tarcea and J. Allison and M. Taufer and V. Pascucci", title = "Large Data Acquisition and Analytics at Synchrotron Radiation Facilities", subtitle = "arXiv:2602.05837v1", year = "2026", url = "https://publications.utah.edu/publications/Pan2026a/2602.05837v1.pdf", } @Misc{SCI:Pop2026a, author = "D.J. Pope and J. Elowitt and B. Zhang and M. Parashar and A. Clark", title = "ChemNetworks: New Capabilities for High-Throughput, Real-Time Chemical Graph Construction and Analysis", subtitle = "chemrxiv.15001158/v1", year = "2026", url = "https://publications.utah.edu/publications/Pop2026a/chemrxiv.15001158_v1.pdf", } @Article{SCI:Rah2026a, author = "M.D. Rahman and D. Lange and G.J. Quadri and P. Rosen", title = "Designing Annotations in Visualization: Considerations from Visualization Practitioners and Educators", journal = "Computer Graphics Forum", volume = "45", number = "3", year = "2026", publisher = "Eurographics", url = "https://publications.utah.edu/publications/Rah2026a/2604.07691v1.pdf", } @Misc{SCI:Reg2026a, author = "W. Regli and R. Rajaraman and D. Lopresti and D. Jensen and M. Maher and M. Parasher and M. Singh and H. Yanco", title = "The Imperative for Grand Challenges in Computing", subtitle = "arXiv:2601.00700", year = "2026", url = "https://publications.utah.edu/publications/Reg2026a/2601.00700v1.pdf", } @InProceedings{SCI:Roy2026a, author = "R. Basu Roy and D. Tiwari", title = "LowCarb: Carbon-Aware Scheduling of Serverless Functions", booktitle = "2026 IEEE International Symposium on High Performance Computer Architecture (HPCA)", pages = "1--16", year = "2026", url = "https://publications.utah.edu/publications/Roy2026a/LowCarb_Carbon-Aware_Scheduling_of_Serverless_Functions.pdf", } @Article{SCI:Sah2026a, author = "A. Sahistan and S. Zellmann and H. Miao and N. Morrical and I. Wald and V. Pascucci", title = "Materializing Inter-Channel Relationships with Multi-Density Woodcock Tracking", title_url = "https://pubmed.ncbi.nlm.nih.gov/41533617/", journal = "IEEE Trans Vis Comput Graph", year = "2026", } @Misc{SCI:Tan2026a, author = "X. Tang and X. Yue and H. Mane and D. Li and Q. Nguyen and T. Tasdizen", title = "How to Build Robust, Scalable Models for GSV-Based Indicators in Neighborhood Research", subtitle = "arXiv:2601.06443v1", year = "2026", url = "https://publications.utah.edu/publications/Tan2026a/2601.06443v1.pdf", } @Misc{SCI:Xin2026a, author = "J. Y. Xing and B. Xia and D. Renner and C. D. Cantwell and D. Moxey and R. M. Kirby and S. J. Sherwin", title = "Architecture-aware h -to- p optimisation: spectral/hp element operators for mixed-element meshes", subtitle = "arXiv:2604.04644v1", year = "2026", url = "https://publications.utah.edu/publications/Xin2026a/2604.04644v1.pdf", } @Misc{SCI:Zha2026a, author = "B. Zhang and X. Li and H. Manoochehri and X. Tang and D. Sirohi and B.S. Knudsen and T. Tasdizen", title = "Weakly Supervised Contrastive Learning for Histopathology Patch Embeddings", subtitle = "arXiv:2602.09477v2", year = "2026", url = "https://publications.utah.edu/publications/Zha2026a/2602.09477v2.pdf", } @InProceedings{SCI:Zit2026a, author = "R.G. Zitnay and S. Alizada and T. Moustafa and D. Lange and L. Schreiber and A. Lex and R. L. Judson-Torres and T. A. Zangle and R. L. Belote", title = "QUILPEN decouples pigment absorption and organelle scatter in live melanocytic cells", booktitle = "Proceedings Volume 13863, Label-free Biomedical Imaging and Sensing (LBIS) 2026", year = "2026", publisher = "SPIE", url = "https://publications.utah.edu/publications/Zit2026a/138630E.pdf", } @Misc{SCI:Adc2025a, author = "B. Adcock and B. Hientzsch and A. Narayan and Y. Xu", title = "Hybrid least squares for learning functions from highly noisy data", subtitle = "arXiv:2507.02215", year = "2025", url = "https://publications.utah.edu/publications/Adc2025a/2507.02215v1.pdf", } @InProceedings{SCI:Alk2025a, author = "N. Alkhatani and I. Petri and O. Rana and M. Parashar", title = "Edge learning for energy-aware resource management", booktitle = "2025 IEEE International Conference on Edge Computing and Communications (EDGE)", year = "2025", publisher = "IEEE", url = "https://publications.utah.edu/publications/Alk2025a/Edge_learning_for_energy-aware_resource_management.pdf", } @Misc{SCI:Asl2025a, author = "S. Aslan and NR. Mangine and D.W. Laurence and P.M. Sabin and W. Wu and C. Herz and J. S. Unger and S. A. Maas and M. J. Gillespie and J. A. Weiss and M. A. Jolley", title = "Simulation of Transcatheter Therapies for Atrioventricular Valve Regurgitation in an Open-Source Finite Element Simulation Framework", subtitle = "arXiv:2509.22865v1", year = "2025", url = "https://publications.utah.edu/publications/Asl2025a/2509.22865v1.pdf", } @Article{SCI:Ath2025b, author = "T.M. Athawale and Z. Wang and D. Pugmire and K. Moreland and Q. Gong and S. Klasky and C.R. Johnson and P. Rosen", title = "Uncertainty Visualization of Critical Points of 2D Scalar Fields for Parametric and Nonparametric Probabilistic Models", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "31", number = "1", pages = "108--118", year = "2025", publisher = "IEEE", url = "https://publications.utah.edu/publications/Ath2025b/ath2024b.pdf", } @Article{SCI:Ban2025a, author = "W. Bangerth and C. R. Johnson and D. K. Njeru and B. van Bloemen Waanders", title = "Estimating and using information in inverse problems", journal = "Inverse Problems and Imaging", year = "2025", issn = "1930-8337", url = "https://publications.utah.edu/publications/Ban2025a/10.3934_ipi.2026003.pdf", } @Misc{SCI:Bas2025a, author = "Z. Bastiani and R.M. Kirby and J. Hochhalter and S. Zhe", title = "Diffusion-Based Symbolic Regression", subtitle = "arXiv:2505.24776", year = "2025", url = "https://publications.utah.edu/publications/Bas2025a/2505.24776v1.pdf", } @Misc{SCI:Bel2025a, author = "M. Belianovich and G.E. Fasshauer and A. Narayan and V. Shankar", title = "A Unified Framework for Efficient Kernel and Polynomial Interpolation", subtitle = "arXiv:2507.12629v2", year = "2025", url = "https://publications.utah.edu/publications/Bel2025a/2507.12629v2.pdf", } @Misc{SCI:Bel2025b, author = "F. Bělík and J. Chan and A. Narayan", title = "Efficient and Robust Carathéodory-Steinitz Pruning of Positive Discrete Measures", subtitle = "arXiv:2510.14916", year = "2025", url = "https://publications.utah.edu/publications/Bel2025b/2510.14916v1.pdf", } @Misc{SCI:Bel2025c, author = "F. Bělík and Y. Chen and A. Narayan", title = "Greedy Rational Approximation for Frequency-Domain Model Reduction of Parametric LTI Systems", subtitle = "arXiv:2512.23814v1", year = "2025", url = "https://publications.utah.edu/publications/Bel2025c/2512.23814v1.pdf", } @InProceedings{SCI:Ber2025a, author = "J.A. Bergquist and B. Orkild and E. Kwan and K. Gillette and K. Yazaki and S. Jaroonpipatkul and E. Dibella and R. Shelton and E. Beiging and L. Chang and G. Plank and S. Elhabian and R. S. MacLeod and R. Ranjan", title = "Comparison of LGE MRI Scar Identification Methods for Atrial Computational Modeling", booktitle = "Computing in Cardiology 2025", volume = "52", year = "2025", url = "https://publications.utah.edu/publications/Ber2025a/CinC2025-166.pdf", } @Article{SCI:Bit2025a, author = "L. F. Bittencourt and R. Rodrigues-Filho and J. Spillner and F. De Turck and J. Santos and N. L.S. da Fonseca and O. Rana and M. Parashar and I. Foster", title = "The computing continuum: Past, present, and future", journal = "Computer Science Review", volume = "58", year = "2025", issn = "1574-0137", url = "https://publications.utah.edu/publications/Bit2025a/1-s2.0-S1574013725000589-main.pdf", } @InProceedings{SCI:Bus2025a, author = "A. Busatto and J.A. Bergquist and T. Tasdizen and B.A. Steinberg and R. Ranjan and R.S. MacLeod", title = "Predicting Ventricular Arrhythmia in Myocardial Ischemia Using Machine Learning", booktitle = "2025 Computing in Cardiology Conference", year = "2025", url = "https://publications.utah.edu/publications/Bus2025a/5_Preprint.pdf", } @InProceedings{SCI:Car2025a, author = "L. Carnevale and D. Balouek and S. Sebbio and M. Parashar and M. Villari", title = "Private Distributed Resource Management Data: Predicting CPU Utilization with Bi-LSTM and Federated Learning", title_url = "https://www.computer.org/csdl/proceedings-article/ccgrid/2025/093400a266/27Y6Dcvak3m", booktitle = "2025 IEEE 25th International Symposium on Cluster, Cloud and Internet Computing (CCGrid)", pages = "266-275", year = "2025", publisher = "IEEE", } @Article{SCI:Car2025b, author = "K.R. Carney and R. Sondaz and W. Sturgess and K. Sakthivel and J. Kim and V. Swaminathan and T.C. Bidone", title = "Stabilization of adhesions controls F-actin architecture in mechanotransduction", journal = "Communications Materials", volume = "6", number = "288", year = "2025", publisher = "Nature", url = "https://publications.utah.edu/publications/Car2025b/s43246-025-01006-8.pdf", } @InProceedings{SCI:Cav2025a, author = "D. Cavinatto and T. Webb and S. Joshi and D. Christensen and A. Payne", title = "MR-Compatible Ultrasound Through Transmission for Focused Ultrasound Thermal Therapy", booktitle = "2025 IEEE International Ultrasonics Symposium (IUS)", year = "2025", publisher = "IEEE", url = "https://publications.utah.edu/publications/Cav2025a/MR-Compatible_Ultrasound.pdf", } @Article{SCI:Cha2025a, author = "B. Charoenwong and R.M. Kirby and J. Reiter", title = "Tradeoffs in automated financial regulation of decentralized finance due to limits on mutable turing machines", journal = "Scientific Reports", volume = "15", number = "3016", year = "2025", url = "https://publications.utah.edu/publications/Cha2025a/s41598-024-84612-9.pdf", } @Article{SCI:Che2025a, author = "P. Chen and S. Jernigan and K. Zhao and G.V. PJ and M. Saha and C. Kim and A. Arzani and G. Buckner and J. Hu", title = "Image-guided embolization using Ta@ Ca-Alg microspheres with optimized mechanical performance", journal = "Biomaterials Science", volume = "13", pages = "4786-4802", year = "2025", url = "https://publications.utah.edu/publications/Che2025a/d5bm00797f.pdf", } @Misc{SCI:Cho2025a, author = "J.H. Choi and M. Elhadidy and M. Kim and W. Park and J.C. Park and B. D. Kwun and S. Joo and S. H. Lee and S. U. Lee and J. S. Bang and M. T. Lawton and A. Arzani and J. S. Ahn", title = "Flow alteration strategies for complex basilar apex aneurysms: multicenter experience, systematic review, and insights from computational fluid dynamics", subtitle = "Research Square Preprint", year = "2025", url = "https://publications.utah.edu/publications/Cho2025a/cd72325e-e350-4bfc-9959-9f537c7cb379.pdf", } @Article{SCI:Cof2025a, author = "R.E. Coffman and R. Kolasangiani and T.C. Bidone", title = "Mn2+ accelerates ligand binding-site activation of αIIbβ3 integrin: insight from all-atom simulation", journal = "Biophysical Journal", volume = "124", number = "17", pages = "2854-2864", year = "2025", url = "https://publications.utah.edu/publications/Cof2025a/1-s2.0-S000634952500462X-main.pdf", } @Misc{SCI:Cut2025a, author = "Z. Cutler and L. Harrison and C. Nobre and A. Lex", title = "Crowdsourced Think-Aloud Studies", subtitle = "OSF Preprints", year = "2025", url = "https://publications.utah.edu/publications/Cut2025a/2025_CHI_crowdaloud.pdf", } @Misc{SCI:Dai2025a, author = "H. Dai and S. Joshi ", title = "Refining Skewed Perceptions in Vision-Language Contrastive Models through Visual Representations", subtitle = "arXiv:2405.14030", year = "2025", url = "https://publications.utah.edu/publications/Dai2025a/Dai_ICCVW_2025_paper.pdf", } @Misc{SCI:Dix2025a, author = "T. Dixon and A. Gorodetsky and J. Jakeman and A. Narayan and Y. Xu", title = "Optimally balancing exploration and exploitation to automate multi-fidelity statistical estimation", subtitle = "arXiv:2505.09828v1", year = "2025", url = "https://publications.utah.edu/publications/Dix2025a/2505.09828v1.pdf", } @InProceedings{SCI:Flo2025a, author = "M. Floca and K. O'Laughlin and P. Ramonetti Vega and A. Gupta and I. Altintas and M. Parashar", title = "Toward an Education Hub Linking Research Data and Compute to Learning Workflows in the National Data Platform", booktitle = "PEARC '25: Practice and Experience in Advanced Research Computing 2025", year = "2025", publisher = "ACM", url = "https://publications.utah.edu/publications/Flo2025a/3708035.3736089.pdf", } @InProceedings{SCI:Gar2025a, author = "M. Garcia and J.K. Holmen and M. Berzins", title = "Scaling Uintah on the Aurora Exascale System up to 122,880 Intel Ponte Vecchio Xe Stacks", booktitle = "Practice and Experience in Advanced Research Computing 2025: The Power of Collaboration", number = "4", year = "2025", publisher = "ACM", isbn = "9798400713989", url = "https://publications.utah.edu/publications/Gar2025a/3708035.3736001.pdf", } @Misc{SCI:Gau2025a, author = "T. Gautam and R.M. Kirby and J. Hochhalter and S. Zhe", title = "SIFBench: An Extensive Benchmark for Fatigue Analysis", subtitle = "arXiv:2506.01173", year = "2025", url = "https://publications.utah.edu/publications/Gau2025a/2506.01173v2.pdf", } @Misc{SCI:Ghe2025a, author = "E. Ghelichkhan and T. Tasdizen", title = "A Comparison of Object Detection and Phrase Grounding Models in Chest X-ray Abnormality Localization using Eye-tracking Data", subtitle = "arXiv:2503.01037", year = "2025", } @Misc{SCI:Gor2025a, author = "N. Gorski and X. Liang and H. Guo and L. Yan and B. Wang", title = "A General Framework for Augmenting Lossy Compressors with Topological Guarantees", subtitle = " arXiv:2502.14022", year = "2025", url = "https://publications.utah.edu/publications/Gor2025a/2502.14022v1.pdf", } @Article{SCI:Has2025a, author = "E.M. Hastings and T. Skora and K.R. Carney and H.C. Fu and T.C. Bidone and P. Sigala", title = "Chemical propulsion of hemozoin crystals in malaria parasites", journal = "Proceedings of the National Academy of Sciences", volume = "122", number = "44", pages = "e2513845122", year = "2025", url = "https://publications.utah.edu/publications/Has2025a/hastings-et-al-2025.pdf", } @Misc{SCI:He2025a, author = "T. He and M. McCracken and D. Hajas and S. Creem-Regehr and A. Lex", title = "Using Tactile Charts to Support Comprehension and Learning of Complex Visualizations for Blind and Low-Vision Individuals", year = "2025", url = "https://publications.utah.edu/publications/He2025a/2507.21462v4.pdf", } @InProceedings{SCI:Hol2025a, author = "J.K. Holmen and M. Garcia and A. Sanderson and A. Bagusetty and M. 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Weiss and G.A. Ateshian and L. Timmins", title = "Toward Lesion-specific Stenting Strategies: A Computational Framework to Validate the Deployment of Balloon-expandable Stents", journal = "Annals of Biomedical Engineering", year = "2025", publisher = "Springer Nature", url = "https://publications.utah.edu/publications/Jia2025b/s10439-025-03923-8.pdf", } @Misc{SCI:Jia2025c, author = "F. Jia and Y. Huang and S.H. Wang and C. Garcia-Cardona and A. Bertozzi and B. Wang", title = "Plug-and-Play Image Restoration with Flow Matching: A Continuous Viewpoint", subtitle = "arXiv:2512.04283v1", year = "2025", url = "https://publications.utah.edu/publications/Jia2025c/2512.04283v1.pdf", } @Article{SCI:Joh2025a, author = "L. Johnson and J. Mozingo and P. Atkins and S. Schwab and A. Morris and S. Elhabian and D. Wilson and H. Kim and A. 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D'Souza", title = "Input parameterized physics informed neural networks for de noising, super-resolution, and imaging artifact mitigation in time resolved three dimensional phase-contrast magnetic resonance imaging", journal = "Engineering Applications of Artificial Intelligence", volume = "150", year = "2025", publisher = "Elsevier", issn = "0952-1976", url = "https://publications.utah.edu/publications/Kal2025a/1-s2.0-S0952197625006001-main.pdf", } @Misc{SCI:Kar2025a, author = "M.S.T. Karanam and K. Iyer and S. Joshi and S. Elhabian", title = "Log-Euclidean Regularization for Population-Aware Image Registration", subtitle = "arXiv:2502.02029", year = "2025", url = "https://publications.utah.edu/publications/Kar2025a/2502.02029v1.pdf", } @Misc{SCI:Kat2025a, author = "T. Kataria and B. Knudsen and S.Y. 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Tiwari", title = "GreenMix: Energy-Efficient Serverless Computing via Randomized Sketching on Asymmetric Multi-Cores", booktitle = "Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis", year = "2025", publisher = "Association for Computing Machinery", isbn = "9798400714665", url = "https://publications.utah.edu/publications/Roy2025a/3712285.3759861.pdf", } @Misc{SCI:Sah2025a, author = "S. Saha and S. Joshi and R. Whitaker", title = "ARD-VAE: A Statistical Formulation to Find the Relevant Latent Dimensions of Variational Autoencoders", subtitle = "arXiv:2501.10901", year = "2025", url = "https://publications.utah.edu/publications/Sah2025a/2501.10901v2.pdf", } @Misc{SCI:Sah2025b, author = "S. Saha and S. Joshi and R. 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Brink and O. Pearce and K. Isaacs", title = "A Tale of Two Models: Understanding Data Workers' Internal and External Representations of Complex Data", subtitle = "arXiv:2501.09862v2", year = "2025", url = "https://publications.utah.edu/publications/Scu2025a/2501.09862v2.pdf", } @Misc{SCI:Scu2025b, author = "C. Scully-Allison and K. Menear and K. Potter and A. McNutt and K.E. Isaacs and D. Duplyakin", title = "Same Data, Different Audiences: Using Personas to Scope a Supercomputing Job Queue Visualization", year = "2025", url = "https://publications.utah.edu/publications/Scu2025b/2507.17898v1.pdf", } @InProceedings{SCI:Seb2025a, author = "S. Sebbio and L. Carnevale and D. Balouek and M. Parashar and M. Villari", title = "Data-Driven Operational Artificial Intelligence for Computing Continuum: A Natural Disaster Management Use Case", booktitle = "2025 IEEE 25th International Symposium on Cluster, Cloud and Internet Computing Workshops (CCGridW)", pages = "92-99", year = "2025", url = "https://publications.utah.edu/publications/Seb2025a/sebbio-2025a.pdf", } @Misc{SCI:Sha2025a, author = "M. Shao and S. Joshi", title = "Domain-Shift Immunity in Deep Deformable Registration via Local Feature Representations", subtitle = "arXiv:2512.23142v1", year = "2025", url = "https://publications.utah.edu/publications/Sha2025a/2512.23142v1.pdf", } @InProceedings{SCI:Shr2025a, author = "H. Shrestha and J. Wilburn and B. Bollen and A.M. McNutt and A. Lex and L. Harrison", title = "ReVISitPy: Python Bindings for the reVISit Study Framework", booktitle = "Eurovis 2025", year = "2025", url = "https://publications.utah.edu/publications/Shr2025a/evp20251133.pdf", } @InProceedings{SCI:Tan2025a, author = "X. Tang and X. Li and T. Tasdizen", title = "Dynamic Scale for Transformer", booktitle = "Medical Imaging with Deep Learning", year = "2025", url = "https://publications.utah.edu/publications/Tan2025a/91_Dynamic_Scale_for_Transform.pdf", } @Misc{SCI:Tan2025b, author = "X. Tang and B. Zhang and M.M. Ho and B.S. Knudsen and T. Tasdizen", title = "DuoFormer: Leveraging Hierarchical Representations by Local and Global Attention Vision Transformer", subtitle = "arXiv:2506.12982", year = "2025", url = "https://publications.utah.edu/publications/Tan2025b/2506.12982v1.pdf", } @Article{SCI:Tan2025c, author = "L.C.R. Tanner and A. Busatto and J.A. Bergquist and W.W. Good and B. Zenger and G. Plank and A. Narayan and K. Gillette and R.S. 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Whitaker", title = "Integrated Model Selection and Scalability in Functional Data Analysis through Bayesian Learning", subtitle = "Preprints.org", year = "2025", url = "https://publications.utah.edu/publications/Tao2025a/preprints202503.0658.v1-1.pdf", } @Article{SCI:Tao2025b, author = "W. Tao and T. J. Somorin and J. Kueper and A. Dixon and N. Kass and N. Khan and K. Iyer and J. Wagoner and A. Rogers and R. Whitaker and S. Elhabian and J. A. Goldstein", title = "Quantifying Sagittal Craniosynostosis Severity: A Machine Learning Approach With CranioRate", journal = "The Cleft Palate Craniofacial Journal", year = "2025", publisher = "Sage", url = "https://publications.utah.edu/publications/Tao2025b/tao-et-al-2025.pdf", } @Article{SCI:Tat2025a, author = "Y. Tatari and H.T. Nguyen and A. Arzani and P. Newell ", title = "Investigation of particle transport in geothermal systems using integrated CFD–DEM and data-driven approaches", journal = "Geothermics", volume = "136", year = "2025", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Tat2025a/1-s2.0-S0375650525002846-main.pdf", } @Misc{SCI:Tau2025a, author = "M. Taufer and R. Mihalcea and M. Turk and D. Lopresti and A. Wierman and K. Butler and S. Koenig and D. Danks and W. Gropp and M. Parashar and Y. Gil and B. Regli and R. Rajaraman and D. Jensen and N. Bliss and M. Maher", title = "Now More Than Ever, Foundational AI Research and Infrastructure Depends on the Federal Government", subtitle = "arXiv:2506.14679", year = "2025", url = "https://publications.utah.edu/publications/Tau2025a/2506.14679v1.pdf", } @Misc{SCI:Tra2025a, author = "T. Transue and B. 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Pouch and M.A. Jolley", title = "Novel point cloud registration approach for noninvasive patient specific estimation of leaflet strain from 3D images of heart valves", subtitle = "arXiv:2510.06578", year = "2025", url = "https://publications.utah.edu/publications/Wu2025a/2510.06578v1.pdf", } @Misc{SCI:Xu2025a, author = "H. Xu and S.Y. Elhabian", title = "Adaptive Particle-Based Shape Modeling for Anatomical Surface Correspondence", subtitle = "arXiv:2507.07379", year = "2025", url = "https://publications.utah.edu/publications/Xu2025a/2507.07379v1.pdf", } @Misc{SCI:Xu2025b, author = "S. Xu and M. Rasouli and R.M. Kirby and D. Moxey and H. Sundar", title = "A geometrically informed algebraic multigrid preconditioned iterative approach for solving high-order finite element systems", subtitle = "arXiv:2512.15121v1", year = "2025", url = "https://publications.utah.edu/publications/Xu2025b/2512.15121v1.pdf", } @Misc{SCI:You2025a, author = "C. You and H. Dai and Y. Min and J.S. Sekhon and S. Joshi and J.S. Duncan", title = "The Silent Majority: Demystifying Memorization Effect in the Presence of Spurious Correlations", subtitle = "arXiv:2501.00961v2", year = "2025", url = "https://publications.utah.edu/publications/You2025a/2501.00961v2.pdf", } @Article{SCI:You2025b, author = "C. You and H. Dai and Y. Min and J.S. Sekhon and S. Joshi and J.S. Duncan", title = "Uncovering memorization effect in the presence of spurious correlations", journal = "Nature Communications", year = "2025", url = "https://publications.utah.edu/publications/You2025b/s41467-025-61531-5.pdf", } @Article{SCI:Zha2025a, author = "Y. Zhang and M. A. Urquijo and R. G. Zitnay and K. Marks and R. L. Belote and M.M.K. Hansen and M. Ferita and H. M. Neuendorf and T. Liu and E. A. Smith and E. M. Mehrabad and M. Hejna and T. E. Moustafa and D. Lange and M. Hu and F. Vand-Rajabpour and A. Done and C. A. Becker and M. Lieberman and M. Chang and B. K. Lohman and C. J. Stubben and M. Q. Reeves and X. Zhang and L. 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Zhe", title = "Complexity-Aware Deep Symbolic Regression with Robust Risk-Seeking Policy Gradients", subtitle = "arXiv:2406.06751", year = "2024", url = "https://publications.utah.edu/publications/Bas2024a/2406.06751v1.pdf", } @Article{SCI:Bei2024a, author = "J.W. Beiriger and W. Tao and Z. Irgebay and J. Smetona and L. Dvoracek and N. Kass and A. Dixon and C. Zhang and M. Mehta and R. Whitaker and J. Goldstein", title = "A Longitudinal Analysis of Pre-and Post-Operative Dysmorphology in Metopic Craniosynostosis", journal = "The Cleft Palate Craniofacial Journal", year = "2024", publisher = "Sage", url = "https://publications.utah.edu/publications/Bei2024a/beiriger-et-al-2024.pdf", } @Misc{SCI:Ber2024b, author = "C.C. Berggren and D. Jiang and Y.F. Wang and J.A. Bergquist and L. Rupp and Z. Liu and R.S. MacLeod and A. Narayan and L. Timmins", title = "Influence of Material Parameter Variability on the Predicted Coronary Artery Biomechanical Environment via Uncertainty Quantification", subtitle = "arXiv preprint arXiv:2401.15047", year = "2024", url = "https://publications.utah.edu/publications/Ber2024b/2401.15047v1.pdf", } @Article{SCI:Ber2024c, author = "J.A. Bergquist and B. Zenger and J. Brundage and R.S. MacLeod and T.J. Bunch and R. Shah and X. Ye and A. Lyons and M. Torre and R. Ranjan and T. Tasdizen and B.A. Steinberg", title = "Performance of Off-the-Shelf Machine Learning Architectures and Biases in Low Left Ventricular Ejection Fraction Detection", journal = "Heart Rhythm O2", volume = "5", number = "9", pages = "644 - 654", year = "2024", url = "https://publications.utah.edu/publications/Ber2024c/PIIS2666501824002289.pdf", } @InProceedings{SCI:Ber2024d, author = "J.A. Bergquist and D. Dade and B. Zenger and R.S. MacLeod and X. Ye and R. Ranjan and T. Tasdizen and B.A. Steinberg", title = "Machine Learning Prediction of Blood Potassium at Different Time Cutoffs", booktitle = "Computing in Cardiology 2024", year = "2024", url = "https://publications.utah.edu/publications/Ber2024d/CinC2024-145.pdf", } @Misc{SCI:Bor2024a, author = "K. Borkiewicz and E. Jensen and Y. Miao and S. Levy and J.P. Naiman and J. Carpenter and K.E. Isaacs", title = "Audience Reach of Scientific Data Visualizations in Planetarium-Screened Films", year = "2024", url = "https://publications.utah.edu/publications/Bor2024a/2411.08045v1.pdf", } @Misc{SCI:Can2024a, author = "O. Cankur and A. Tomar and D. Nichols and C. Scully-Allison and K. Isaacs and A. Bhatele", title = "Automated Programmatic Performance Analysis of Parallel Programs", subtitle = "arXiv:2401.13150v1", year = "2024", url = "https://publications.utah.edu/publications/Can2024a/2401.13150v1.pdf", } @Article{SCI:Cha2024a, author = "A.M. Chalifoux and L. Gibb and K.N. Wurth and T. Tenner and T. Tasdizen and L. MacDonald", title = "Morphology of uranium oxides reduced from magnesium and sodium diuranate", title_url = "https://www.degruyter.com/document/doi/10.1515/ract-2023-0221/html", journal = "Radiochimica Acta", volume = "112", number = "2", pages = "73-84", year = "2024", } @Article{SCI:Che2024a, author = "N. Cheng and O.A. Malik and Y. Xu and S. Becker and A. Doostan and A. Narayan", title = "Subsampling of Parametric Models with Bifidelity Boosting", journal = "Journal on Uncertainty Quantificatio.", year = "2024", publisher = "ACM", url = "https://publications.utah.edu/publications/Che2024a/22m1524989.pdf", } @Misc{SCI:Che2024b, author = "Y. Chen and Y. Ji and A. Narayan and Z. Xu", title = "TGPT-PINN: Nonlinear model reduction with transformed GPT-PINNs", subtitle = "arXiv preprint arXiv:2403.03459", year = "2024", url = "https://publications.utah.edu/publications/Che2024b/2403.03459v1.pdf", } @Misc{SCI:Coo2024a, author = "M. Cooley and S. Zhe and R.M. Kirby and V. Shankar", title = "Polynomial-Augmented Neural Networks (PANNs) with Weak Orthogonality Constraints for Enhanced Function and PDE Approximation", subtitle = "arXiv preprint arXiv:2406.02336", year = "2024", url = "https://publications.utah.edu/publications/Coo2024a/2406.02336v1.pdf", } @Misc{SCI:Coo2024b, author = "M. Cooley and R.M. Kirby and S. Zhe and V. Shankar", title = "HyResPINNs: Adaptive Hybrid Residual Networks for Learning Optimal Combinations of Neural and RBF Components for Physics-Informed Modeling", subtitle = "arXiv:2410.03573", year = "2024", url = "https://publications.utah.edu/publications/Coo2024b/2410.03573v1.pdf", } @Misc{SCI:Csa2024a, author = "H. Csala and A. Mohan and D. Livescu and A. Arzani", title = "Physics-constrained coupled neural differential equations for one dimensional blood flow modeling", subtitle = "arXiv:2411.05631", year = "2024", url = "https://publications.utah.edu/publications/Csa2024a/2411.05631v1.pdf", } @Article{SCI:Csa2024b, author = "H. 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Joshi", title = "Refining Skewed Perceptions in Vision-Language Models through Visual Representations", subtitle = "arXiv preprint arXiv:2405.14030", year = "2024", url = "https://publications.utah.edu/publications/Dai2024a/2405.14030v1.pdf", } @Article{SCI:Das2024a, author = "S. Dasetty and T.C. Bidone and A.L. Ferguson", title = "Data-driven prediction of αIIbβ3 integrin activation pathways using nonlinear manifold learning and deep generative modeling", journal = "Biophysical Journal", volume = "123", year = "2024", url = "https://publications.utah.edu/publications/Das2024a/PIIS0006349523041292.pdf", } @Article{SCI:Dog2024a, author = "Y.S. Dogrusoz and L. Bear and J.A. Bergquist and A. Rababah and W. Good and J. Stoks and J. Svehikova and E. van Dam and D.H. Brooks and R.S. MacLeod", title = "Evaluation of five methods for the interpolation of bad leads in the solution of the inverse electrocardiography problem", journal = "Physiological Measurement", volume = "24", number = "45", year = "2024", url = "https://publications.utah.edu/publications/Dog2024a/Serinagaoglu_Dogrusoz_2024_Physiol._Meas._45_095012.pdf", } @Article{SCI:Don2024a, author = "J. Dong and E. Kwan and J.A. Bergquist and B.A. Steinberg and D.J. Dosdall and E. DiBella and R.S. MacLeod and T.J. Bunch and R. Ranjan", title = "Ablation-induced left atrial mechanical dysfunction recovers in weeks after ablation", title_url = "https://link.springer.com/article/10.1007/s10840-024-01795-x", journal = "Journal of Interventional Cardiac Electrophysiology", year = "2024", publisher = "Springer", } @Article{SCI:Don2024b, author = "J. Dong and E. Kwan and J.A. Bergquist and D.J. Dosdall and E.V. DiBella and R.S. MacLeod and G. Stoddard and K. Konstantidinis and B.A. Steinberg and T.J. Bunch and R. 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Podhorszki and A. Gainaru and S. Klasky and M. Parashar and M. Wolf and E. Suchtya and E. Fredj and V. Bolea and F. Poschel and K. Steiniger and M. Bussmann and R. Pausch and S. Chandrasekaran", title = "Streaming Data in HPC Workflows Using ADIOS", subtitle = "arXiv:2410.00178v1", year = "2024", url = "https://publications.utah.edu/publications/Eis2024a/2410.00178v1.pdf", } @InProceedings{SCI:Eli2024a, author = "I.J. Eliza and J. Wagoner and J. Wilburn and N. Lanza and D. Hajas and A. Lex", title = "Accessible Text Descriptions for UpSet Plots", booktitle = "2024 1st Workshop on Accessible Data Visualization (AccessViz)", pages = "1--4", year = "2024", url = "https://publications.utah.edu/publications/Eli2024a/Accessible_Text_Descriptions_for_UpSet_Plots.pdf", } @Misc{SCI:Eps2024a, author = "Y. Epshteyn and A. Narayan and Y. Yu", title = "Energy Stable and Structure-Preserving Algorithms for the Stochastic Galerkin System of 2D Shallow Water Equations", subtitle = "arXiv:2412.16353", year = "2024", url = "https://publications.utah.edu/publications/Eps2024a/Energy_Stable_2D_SGSWE_Epshteyn_Narayan_Yu.pdf", } @Article{SCI:Fer2024a, author = "A. Ferrero and E. Ghelichkhan and H. Manoochehri and M.M. Ho and D.J. Albertson and B.J. Brintz and T. Tasdizen and R.T. Whitaker and B. Knudsen", title = "HistoEM: A Pathologist-Guided and Explainable Workflow Using Histogram Embedding for Gland Classification", title_url = "https://www.modernpathology.org/article/S0893-3952(24)00027-9/abstract", journal = "Modern Pathology", volume = "37", number = "4", year = "2024", } @InProceedings{SCI:Gar2024a, author = "S. Garg and J. Zhang and R. Pitchumani and M. Parashar and B. Xie and S. Kannan", title = "CrossPrefetch: Accelerating I/O Prefetching for Modern Storage", booktitle = "29th ACM International Conference on Architectural Support for Programming Languages and Operating Systems", year = "2024", publisher = "ACM", url = "https://publications.utah.edu/publications/Gar2024a/3617232.3624872.pdf", } @Misc{SCI:Gas2024a, author = "E. Gasparovic and E. Purvine and R. Sazdanovic and B. Wang and Y. Wang and L. Ziegelmeier", title = "A survey of simplicial, relative, and chain complex homology theories for hypergraphs", year = "2024", url = "https://publications.utah.edu/publications/Gas2024a/2409.18310v1.pdf", } @Article{SCI:Gho2024a, author = "S. Ghorbany and M. Hu and S. Yao and C. Wang and Q.C. Nguyen and X. Yue and M. Alirezaei and T. Tasdizen and M Sisk", title = "Examining the role of passive design indicators in energy burden reduction: Insights from a machine learning and deep learning approach", journal = "Building and Environment", year = "2024", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Gho2024a/1-s2.0-S0360132323011538-main.pdf", } @PhdThesis{SCI:Gri2024a, author = "C. Gritton", title = "MODELING ELECTROCHEMISTRY PROBLEMS USING THE MATERIAL POINT AND FINITE VOLUME METHODS", subtitle = "Ph.D. Dissertation", year = "2024", school = "School of Computing", url = "https://publications.utah.edu/publications/Gri2024a/gritton final.pdf", } @Misc{SCI:Han2024a, author = "M. Han and J. Li and S. Sane and S. Gupta and B. Wang and S. Petruzza and C.R. Johnson", title = "Interactive Visualization of Time-Varying Flow Fields Using Particle Tracing Neural Networks", subtitle = "arXiv preprint arXiv:2312.14973", year = "2024", url = "https://publications.utah.edu/publications/Han2024a/Lagrangian_Based_Flow_Visualization_Using_DL.pdf", } @InProceedings{SCI:Han2024b, author = "M. Han and T. Athawale and J. Li and C.R. Johnson", title = "Accelerated Depth Computation for Surface Boxplots with Deep Learning", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "38--42", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Han2024b/han2024b.pdf", } @Misc{SCI:Han2024c, author = "C. Han and K.E. Isaacs", title = "A Deixis-Centered Approach for Documenting Remote Synchronous Communication around Data Visualizations", subtitle = "arXiv:2408.04041", year = "2024", url = "https://publications.utah.edu/publications/Han2024c/2408.04041v1.pdf", } @Misc{SCI:Han2024d, author = "C. Han and J. Lieffers and C. Morrison and K.E. Isaacs", title = "An Overview+ Detail Layout for Visualizing Compound Graphs", subtitle = "arXiv:2408.04045", year = "2024", url = "https://publications.utah.edu/publications/Han2024d/2408.04045v1.pdf", } @InProceedings{SCI:Har2024a, author = "G. Hari and N. Joshi and Z. Wang and Q. Gong and D. Pugmire and K. Moreland and C.R. Johnson and S. Klasky and N. Podhorszki and T. Athawale", title = "FunM2C: A Filter for Uncertainty Visualization of Multivariate Data on Multi-Core Devices", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "43--47", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Har2024a/har2024a.pdf", } @Misc{SCI:Ho2024a, author = "M.M. Ho and S. Dubey and Y. Chong and B. Knudsen and T. Tasdizen", title = "F2FLDM: Latent Diffusion Models with Histopathology Pre-Trained Embeddings for Unpaired Frozen Section to FFPE Translation", subtitle = "arXiv:2404.12650v1", year = "2024", url = "https://publications.utah.edu/publications/Ho2024a/2404.12650v1.pdf", } @Misc{SCI:Ho2024b, author = "M.M. Ho and E. Ghelichkhan and Y. Chong and Y. Zhou and B.S. Knudsen and T. Tasdizen", title = "DISC: Latent Diffusion Models with Self-Distillation from Separated Conditions for Prostate Cancer Grading", subtitle = "arXiv:2404.13097", year = "2024", url = "https://publications.utah.edu/publications/Ho2024b/31_disc_latent_diffusion_models_w.pdf", } @Misc{SCI:Hoe2024a, author = "T. Hoefler and M. Copik and P. Beckman and A. Jones and I. Foster and M. Parashar and D. Reed and M. Troyer and T. Schulthess and D. Ernst and J. Dongarra", title = "XaaS: Acceleration as a Service to Enable Productive High-Performance Cloud Computing", subtitle = "arXiv:2401.04552v1", year = "2024", url = "https://publications.utah.edu/publications/Hoe2024a/2401.04552v1.pdf", } @InProceedings{SCI:Hol2024a, author = "J. K. Holmen and M. Garcıa and A. Bagusetty and V. Madananth and A. Sanderson and and M. Berzins", title = "Making Uintah Performance Portable for Department of Energy Exascale Testbeds", booktitle = "Euro-Par 2023: Parallel Processing", pages = "1--12", year = "2024", url = "https://publications.utah.edu/publications/Hol2024a/paper_039.pdf", } @Article{SCI:Hua2024a, author = "Q. Huang and J. Le and S. Joshi and J. Mendes and G. Adluru and E. DiBella", title = "Arterial Input Function (AIF) Correction Using AIF Plus Tissue Inputs with a Bi-LSTM Network", journal = "Tomography", volume = "10", pages = "660-673", year = "2024", url = "https://publications.utah.edu/publications/Hua2024a/tomography-10-00051.pdf", } @Article{SCI:Hua2024b, author = "X. Huang and H. Miao and A. Townsend and K. Champley and J. Tringe and V. Pascucci and P.T. Bremer", title = "Bimodal Visualization of Industrial X-Ray and Neutron Computed Tomography Data", title_url = "https://www.computer.org/csdl/journal/tg/5555/01/10492673/1VSc5lFTj0Y", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2024", publisher = "IEEE", } @Misc{SCI:Hua2024c, author = "Y. Hua and J. Pang and X. Zhang and Y. Liu and X. Shi and B. Wang and Y. Liu and C. Qian", title = "Towards Practical Overlay Networks for Decentralized Federated Learning", subtitle = "arXiv:2409.05331v1", year = "2024", url = "https://publications.utah.edu/publications/Hua2024c/2409.05331v1.pdf", } @InProceedings{SCI:Isa2024a, author = "K.E. Isaacs and H. Kaiser", title = "Halide Code Generation Framework in Phylanx", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-31209-0_3", booktitle = "Euro-Par 2022: Parallel Processing Workshops ", year = "2024", publisher = "Springer", } @Article{SCI:Ish2024a, author = "Y. Ishidoya and E. Kwan and B. Hunt and M. Lange and T. Sharma and D. Dosdall and R.S. MacLeod and E. Kholmovski and T.J. Bunch and R. Ranjan", title = "Effective ablation settings that predict chronic scar after atrial ablation with HELIOSTAR™ multi-electrode radiofrequency balloon catheter", title_url = "https://link.springer.com/article/10.1007/s10840-024-01948-y", journal = "Journal of Interventional Cardiac Electrophysiology", year = "2024", publisher = "Springer Nature", } @Misc{SCI:Iye2024a, author = "K. Iyer and J. Adams and S.Y. Elhabian", title = "SCorP: Statistics-Informed Dense Correspondence Prediction Directly from Unsegmented Medical Images", subtitle = "arXiv preprint arXiv:2404.17967", year = "2024", url = "https://publications.utah.edu/publications/Iye2024a/2404.17967v2.pdf", } @Misc{SCI:Iye2024b, author = "K. Iyer and S.Y. Elhabian", title = "Probabilistic 3D Correspondence Prediction from Sparse Unsegmented Images", subtitle = "arXiv preprint arXiv:2407.01931v1", year = "2024", url = "https://publications.utah.edu/publications/Iye2024b/2407.01931v1.pdf", } @Misc{SCI:Iye2024c, author = "K. Iyer and S. Elhabian and S. Joshi", title = "LEDA: Log-Euclidean Diffeomorphic Autoencoder for Efficient Statistical Analysis of Diffeomorphism", subtitle = "arXiv preprint arXiv:2412.16129", year = "2024", url = "https://publications.utah.edu/publications/Iye2024c/2412.16129v1.pdf", } @InProceedings{SCI:Jin2024a, author = "R. Jin and J.A. Bergquist and D. Dade and B. Zenger and X. Ye and R. Ranjan and R.S. MacLeod and B. Steinberg and T. Tasdizen", title = "Machine Learning Estimation of Myocardial Ischemia Severity Using Body Surface ECG", booktitle = "Computing in Cardiology 2024", year = "2024", url = "https://publications.utah.edu/publications/Jin2024a/144_Preprint.pdf", } @Article{SCI:Joh2024a, author = "J Johnson and L McDonald and T Tasdizen", title = "Improving uranium oxide pathway discernment and generalizability using contrastive self-supervised learning", journal = "Computational Materials Science", volume = "223", year = "2024", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Joh2024a/1-s2.0-S0927025623007425-main.pdf", } @Article{SCI:Joh2024b, author = "L.G. Johnson and J.D. Mozingo and P.R. Atkins and S. Schwab and A. Morris and S.Y. Elhabian and D.R. Wilson and H. Kim and A.E. 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Elhabian", title = "StainDiffuser: MultiTask Dual Diffusion Model for Virtual Staining", subtitle = "arXiv preprint arXiv:2403.11340", year = "2024", url = "https://publications.utah.edu/publications/Kat2024a/2403.11340v1.pdf", } @Article{SCI:Kol2024a, author = "R. Kolasangiani and K. Farzanian and Y. Chen and M.A. Schwartz and T.C. Bidone", title = "Conformational response of αIIbβ3 and αVβ3 integrins to force", journal = "Structure", year = "2024", publisher = "Elsevier", issn = "0969-2126", url = "https://publications.utah.edu/publications/Kol2024a/PIIS096921262400529X.pdf", } @Article{SCI:Kop2024a, author = "V. Koppelmans and M.F.L. Ruitenberg and S.Y. Schaefer and J.B. King and J.M. Jacobo and B.P. Silvester and A.F. Mejia and J. van der Geest and J.M. Hoffman and T. Tasdizen and K. 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Lex", title = "Aardvark: Composite Visualizations of Trees, Time-Series, and Images", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Lan2024a/paper_2023_Aardvark 29.pdf", } @InProceedings{SCI:Li2024a, author = "J. Li and T.A.J. Ouermi and C.R. Johnson", title = "Visualizing Uncertainties in Ensemble Wildfire Forecast Simulations", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "84--88", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Li2024a/li2024a.pdf", } @Misc{SCI:Li2024b, author = "Z. Li and H. Miao and V. Pascucci and S. Liu", title = "Visualization Literacy of Multimodal Large Language Models: A Comparative Study", subtitle = "arXiv:2407.10996", year = "2024", url = "https://publications.utah.edu/publications/Li2024b/LLM_for_Visualization_Evaluation_Benchmark.pdf", } @Misc{SCI:Li2024c, author = "X. Li and R. Mohammed and T. Mangin and S. Saha and K. Kelly and R.T. Whitaker and T. Tasdizen", title = "Joint Audio-Visual Idling Vehicle Detection with Streamlined Input Dependencies", subtitle = "arXiv:2410.21170v1", year = "2024", url = "https://publications.utah.edu/publications/Li2024c/2410.21170v1.pdf", } @Article{SCI:Li2024d, author = "Z. Li and S. Liu and X. Yu and K. Bhavya and J. Cao and J.D. Diffenderfer and D. James and P.T. Bremer and V. Pascucci", title = "“Understanding Robustness Lottery”: A Geometric Visual Comparative Analysis of Neural Network Pruning Approaches", title_url = "https://www.computer.org/csdl/journal/tg/5555/01/10787269/22xbn2MokPm", journal = " IEEE Transactions on Visualization & Computer Graphics", pages = "1--16", year = "2024", publisher = "IEEE", issn = "1941-0506", } @Misc{SCI:Lis2024a, author = "M. Lisnic and Z. Cutler and M. Kogan and A. Lex", title = "Visualization Guardrails: Designing Interventions Against Cherry-Picking in Interactive Data Explorers", subtitle = "Preprint", year = "2024", url = "https://publications.utah.edu/publications/Lis2024a/preprint_2024_guardrails.pdf", } @Misc{SCI:Lon2024a, author = "D. Long and Z. Xu and G. Yang and A. Narayan and S. Zhe", title = "Arbitrarily-Conditioned Multi-Functional Diffusion for Multi-Physics Emulation", subtitle = "arXiv:2410.13794", year = "2024", url = "https://publications.utah.edu/publications/Lon2024a/2410.13794v2.pdf", } @Misc{SCI:Low2024a, author = "M. Lowery and J. Turnage and Z. Morrow and J.D. Jakeman and A. Narayan", title = "Kernel Neural Operators (KNOs) for Scalable, Memory-efficient, Geometrically-flexible Operator Learning", subtitle = "arXiv:2407.00809v1", year = "2024", url = "https://publications.utah.edu/publications/Low2024a/2407.00809v1.pdf", } @Article{SCI:Lyu2024a, author = "W. Lyu and R. Sridharamurthy and J.M. Phillips and B. Wang", title = "Fast Comparative Analysis of Merge Trees Using Locality Sensitive Hashing", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Lyu2024a/2409.08519v1.pdf", } @Article{SCI:Mac2024a, author = "C. Mackenzie and S. Ruckel and A. Morris and S. Elhabian and E. Bieging", title = "Statistical Shape Modeling To Predict Left Atrial Appendage Thrombus", title_url = "https://www.journalofcardiovascularct.com/article/S1934-5925(24)00304-6/fulltext", journal = "Journal of Cardiovascular Computed Tomography", year = "2024", publisher = "Elsevier", } @Article{SCI:Mac2024b, author = "C. Mackenzie and A. Morris and S. Ruckel and S. Elhabian and E. Bieging", title = "Left Atrial Appendage Thrombus Prediction with Statistical Shape Modeling", journal = "Circulation", volume = "150", year = "2024", } @Misc{SCI:Man2024a, author = "H. Manoochehri and B. Zhang and B.S. Knudsen and T. Tasdizen", title = "PathMoCo: A Novel Framework to Improve Feature Embedding in Self-supervised Contrastive Learning for Histopathological Images", subtitle = "arXiv:2410.17514", year = "2024", url = "https://publications.utah.edu/publications/Man2024a/2410.17514v3.pdf", } @Article{SCI:Ngu2024a, author = "Q.C. Nguyen and T. Tasdizen and M. Alirezaei and H. Mane and X. Yue and J.S. Merchant and W. Yu and L. Drew and D. Li and T.T. Nguyen", title = "Neighborhood built environment, obesity, and diabetes: A Utah siblings study", journal = "SSM - Population Health", volume = "26", year = "2024", url = "https://publications.utah.edu/publications/Ngu2024a/1-s2.0-S2352827324000715-main.pdf", } @Article{SCI:Ngu2024b, author = "Q.C. Nguyen and M. Alirezaei and X. Yue and H. Mane and D. Li and L. Zhao and T.T. Nguyen and R. Patel and W. Yu and M. Hu and D. Quistberg and T. Tasdizen", title = "Leveraging computer vision for predicting collision risks: a cross-sectional analysis of 2019–2021 fatal collisions in the USA", journal = "Injury Prevention", year = "2024", publisher = "BMJ", url = "https://publications.utah.edu/publications/Ngu2024b/ip-2023-045153.full.pdf", } @Misc{SCI:Nih2024a, author = "R. Nihalaani and T. Kataria and J. Adams and S.Y. Elhabian", title = "Estimation and Analysis of Slice Propagation Uncertainty in 3D Anatomy Segmentation", subtitle = "arXiv preprint arXiv:2403.12290", year = "2024", url = "https://publications.utah.edu/publications/Nih2024a/2403.12290v1.pdf", } @Article{SCI:Ork2024a, author = "B. Orkild and K.M. Arefeen Sultan and E. Kholmovski and E. Kwan and E. Bieging and A. Morris and G. Stoddard and R. S. MacLeod and S. Elhabian and R. Ranjan & E. DiBella ", title = "Image quality assessment and automation in late gadolinium-enhanced MRI of the left atrium in atrial fibrillation patients", title_url = "https://link.springer.com/article/10.1007/s10840-024-01971-z", journal = "Journal of Interventional Cardiac Electrophysiology", year = "2024", publisher = "Springer Nature", } @InProceedings{SCI:Oue2024a, author = "T.A.J. Ouermi and J. Li and T. Athawale and C.R. Johnson", title = "Estimation and Visualization of Isosurface Uncertainty from Linear and High-Order Interpolation Methods", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "51--61", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Oue2024a/oue2024a.pdf", } @InProceedings{SCI:Oue2024b, author = "T.A.J. Ouermi and J. Li and Z. Morrow and B. Waanders and C.R. Johnson", title = "Glyph-Based Uncertainty Visualization and Analysis of Time-Varying Vector Fields", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "73--77", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Oue2024b/oue2024b.pdf", } @InProceedings{SCI:Pan2024b, author = "A. Panta and X. Huang and N. McCurdy and D. Ellsworth and A. 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Parashar", title = "Enabling Responsible Artificial Intelligence Research and Development Through the Democratization of Advanced Cyberinfrastructure", journal = "Harvard Data Science Review, Special Issue 4: Democratizing Data", year = "2024", url = "https://publications.utah.edu/publications/Par2024a/nlt7gljtg0bmkqbmad5j59fy8uph144e.pdf", } @Misc{SCI:Par2024b, author = "M. Parashar", title = "Everywhere & Nowhere: Envisioning a Computing Continuum for Science", subtitle = "arXiv:2406.04480v1", year = "2024", url = "https://publications.utah.edu/publications/Par2024b/2406.04480v1.pdf", } @Misc{SCI:Par2024c, author = "S. Parsa and B. Wang", title = "Harmonic Chain Barcode and Stability", subtitle = "arXiv:2409.06093", year = "2024", url = "https://publications.utah.edu/publications/Par2024c/2409.06093v1.pdf", } @Misc{SCI:Pen2024a, author = "M. Penwarden and H. Owhadi and R.M. Kirby", title = "Kolmogorov n-Widths for Multitask Physics-Informed Machine Learning (PIML) Methods: Towards Robust Metrics", subtitle = "arXiv preprint arXiv:2402.11126", year = "2024", url = "https://publications.utah.edu/publications/Pen2024a/2402.11126v1.pdf", } @Article{SCI:Qui2024a, author = "D. Alex Quistberg and S.J. Mooney and T. Tasdizen and P. Arbelaez and Q.C. Nguyen", title = "Deep Learning-Methods to Amplify Epidemiological Data Collection and Analyses", journal = "American Journal of Epidemiology", year = "2024", publisher = "Oxford University Press", url = "https://publications.utah.edu/publications/Qui2024a/kwae215.pdf", } @InProceedings{SCI:Sak2024a, author = "S. Saklani and C. Goel and S. Bansal and Z. Wang and S. Dutta and T. Athawale and D. Pugmire and C.R. Johnson", title = "Uncertainty-Informed Volume Visualization using Implicit Neural Representation", booktitle = "IEEE Workshop on Uncertainty Visualization: Applications, Techniques, Software, and Decision Frameworks", pages = "62--72", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Sak2024a/sak2024a.pdf", } @Misc{SCI:Sak2024b, author = "S.A. Sakin and K.E. Isaacs", title = "A Literature-based Visualization Task Taxonomy for Gantt Charts", subtitle = "arXiv:2408.04050", year = "2024", url = "https://publications.utah.edu/publications/Sak2024b/2408.04050v2.pdf", } @Article{SCI:Scu2024a, author = "C. Scully-Allison and I. Lumsden and K. Williams and J. Bartels and M. Taufer and S. Brink and A. Bhatele and O. Pearce and K. Isaacs", title = "Design Concerns for Integrated Scripting and Interactive Visualization in Notebook Environments", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2024", publisher = "IEEE", } @Article{SCI:Sha2024a, author = "M. Shao and A. Singh and S. Johnson and A. Pessin and R. Merrill and A. Page and H. Odeen and S. Joshi and A. Payne", title = "Design and Evaluation of an Open-Source Block Face Imaging System for 2D Histology to Magnetic Resonance Image Registration", journal = "MethodsX", volume = "13", pages = "103062", year = "2024", publisher = "Elsevier", issn = "2215-0161", url = "https://publications.utah.edu/publications/Sha2024a/1-s2.0-S2215016124005132-main.pdf", } @Article{SCI:Shi2024a, author = "N. Shingde and T. Blattner and A. Bardakoff and W. Keyrouz and M. Berzins", title = "An illustration of extending Hedgehog to multi-node GPU architectures using GEMM", journal = "Springer Nature (to appear)", year = "2024", url = "https://publications.utah.edu/publications/Shi2024a/extended_wamta23.pdf", } @Article{SCI:Sin2024a, author = "A. Singh and S. Adams-Tew and S. Johnson and H. Odeen and J. Shea and A. Johnson and L. Day and A. Pessin and A. Payne and S. Joshi", title = "Treatment Efficacy Prediction of Focused Ultrasound Therapies Using Multi-parametric Magnetic Resonance Imaging", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-73376-5_18", journal = "Cancer Prevention, Detection, and Intervention", pages = "190-199", year = "2024", publisher = "Springer Nature Switzerland", } @Article{SCI:Sub2024a, author = "S. Subramaniam and M. Miller and several co-authors and C. R. Johnson and et al.", title = "Grand Challenges at the Interface of Engineering and Medicine", journal = "IEEE Open Journal of Engineering in Medicine and Biology", volume = "5", pages = "1--13", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Sub2024a/Grand_Challenges.pdf", } @Article{SCI:Sub2024b, author = "S. Subramaniam and M. Akay and M. A. Anastasio and V. Bailey and D. Boas and P. Bonato and A. Chilkoti and J. R. Cochran and V. Colvin and T. A. Desai and J. S. Duncan and F. H. Epstein and S. Fraley and C. Giachelli and K. J. Grande-Allen and J. Green and X. E. Guo and I. B. Hilton and J. D. Humphrey and C. R. Johnson and G. Karniadakis and M. R. King and R. F. Kirsch and S. Kumar and C. T. Laurencin and S. Li and R. L. Lieber and N. Lovell and P. Mali and S. S. Margulies and D. F. Meaney and B. Ogle and B. Palsson and N. A. Peppas and E. J. Perreault and R. Rabbitt and L. A. Setton and L. D. Shea and S. G. Shroff and K. Shung and A. S. 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Tasdizen", title = "DuoFormer: Leveraging Hierarchical Visual Representations by Local and Global Attention", subtitle = "arXiv:2407.13920", year = "2024", url = "https://publications.utah.edu/publications/Tan2024a/2407.13920v1.pdf", } @Misc{SCI:Tan2024b, author = "X. Tang and J. Berquist and B.A. Steinberg and T. Tasdizen", title = "Hierarchical Transformer for Electrocardiogram Diagnosis", subtitle = "arXiv:2411.00755", year = "2024", url = "https://publications.utah.edu/publications/Tan2024b/2411.00755v1.pdf", } @Misc{SCI:Tas2024a, author = "T. Tasdizen", title = "VISTA: A Visual and Textual Attention Dataset for Interpreting Multimodal Models", subtitle = "arXiv:2410.04609", year = "2024", url = "https://publications.utah.edu/publications/Tas2024a/2410.04609v1.pdf", } @Article{SCI:Tat2024a, author = "Y. Tatari and T.A. Smith and J. Hu and A. Arzani ", title = "Optimizing distal and proximal splenic artery embolization with patient-specific computational fluid dynamics", journal = "Journal of Biomechanics", volume = "176", year = "2024", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Tat2024a/1-s2.0-S0021929024003981-main.pdf", } @Article{SCI:Tau2024a, author = "M. Taufer and H. Martinez and J. Luettgau and L. Whitnah and G. Scorzelli and P. Newel and A. Panta and T. Bremer and D. Fils and C.R. Kirkpatrick and N. McCurdy and V. Pascucci", title = "Integrating FAIR Digital Objects (FDOs) into the National Science Data Fabric (NSDF) to Revolutionize Dataflows for Scientific Discovery", journal = "Computing in Science & Engineering", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tau2024a/paper_taufer.pdf", } @InProceedings{SCI:Tau2024b, author = "M. Taufer and J. Marquez and H. Martinez and A. Gooch and A. Panta and G. Scorzelli and P. Olaya and V. Pascucci", title = "Leveraging National Science Data Fabric Services to Train Data Scientists", subtitle = "Workshop on Education for High Performance Computing", booktitle = "The International Conference for High Performance Computing, Networking, Storage, and Analysis", year = "2024", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tau2024b/555400a355.pdf", } @Misc{SCI:Tau2024c, author = "M. Taufer and V. Pascucci and C.R. Kirkpatric and I.T. Foster", title = "Sustainable Data Democratization: A Multifaceted Investment for an Equitable Future", subtitle = "arXiv:2408.14627", year = "2024", url = "https://publications.utah.edu/publications/Tau2024c/2408.14627v1.pdf", } @Misc{SCI:Uke2024a, author = "J. Ukey and T. Kataria and S.Y. Elhabian", title = "MASSM: An End-to-End Deep Learning Framework for Multi-Anatomy Statistical Shape Modeling Directly From Images", subtitle = "arXiv preprint arXiv:2403.11008", year = "2024", url = "https://publications.utah.edu/publications/Uke2024a/2403.11008v1.pdf", } @Misc{SCI:Uke2024b, author = "J. Ukey and T. Kataria and S.Y. Elhabian", title = "Weakly SSM: On the Viability of Weakly Supervised Segmentations for Statistical Shape Modeling", subtitle = "arXiv:2407.15260", year = "2024", url = "https://publications.utah.edu/publications/Uke2024b/2407.15260v1.pdf", } @Misc{SCI:Vik2024a, author = "S. Viknesh and Y. Tatari and A. Arzani", title = "ADAM-SINDy: An Efficient Optimization Framework for Parameterized Nonlinear Dynamical System Identification", subtitle = "arXiv:2410.16528", year = "2024", url = "https://publications.utah.edu/publications/Vik2024a/2410.16528v1.pdf", } @Misc{SCI:Vik2024b, author = "S. Viknesh and A. Tohidi and F. Afghah and R. Stoll and A. Arzani", title = "Role of flow topology in wind-driven wildfire propagation", subtitle = "arXiv:2411.04007", year = "2024", url = "https://publications.utah.edu/publications/Vik2024b/2411.04007v1.pdf", } @Article{SCI:Wan2024a, author = "S. Wang and H. Yan and K.E. Isaacs and Y. Sun", title = "Visual Exploratory Analysis for Designing Large-Scale Network-on-Chip Architectures: A Domain Expert-Led Design Study", title_url = "https://www.computer.org/csdl/journal/tg/5555/01/10330046/1SrOdIwoi2Y", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "30", pages = "1970-1983", year = "2024", } @Misc{SCI:Wan2024b, author = "S.H. Wang and J. Baker and C. Hauck and B. Wang", title = "Learning to Control the Smoothness of Graph Convolutional Network Features", subtitle = "arXiv:2410.14604", year = "2024", url = "https://publications.utah.edu/publications/Wan2024b/2410.14604v1.pdf", } @Article{SCI:Whi2024a, author = "M.C. Whitton and C.R. Johnson and D. Kasik and A. Stork", title = "The Making of “The Big 50: Celebrating 50 ACM SIGGRAPH Conferences”", title_url = "https://dl.acm.org/doi/abs/10.1109/MCG.2024.3414048", journal = "IEEE Computer Graphics and Applications", volume = "44", pages = "89--97", year = "2024", publisher = "IEEE", month = "Aug", issn = "0272-1716", } @Article{SCI:Yeh2024a, author = "H.P. Yeh and M. Bayat and A. Arzani and J.H. Hattel", title = "Accelerated process parameter selection of polymer-based selective laser sintering via hybrid physics-informed neural network and finite element surrogate modelling", journal = "Applied Mathematical Modelling", volume = "130", pages = "693--712", year = "2024", url = "https://publications.utah.edu/publications/Yeh2024a/1-s2.0-S0307904X24001446-main.pdf", } @Article{SCI:Zew2024a, author = "H.Y. Zewdie and O.L. Sarmiento and J.D. Pinzón and M.A. Wilches-Mogollon and P. A. Arbelaez and L. Baldovino-Chiquillo and D. Hidalgo and L. Guzman and S.J. Mooney and Q.C. Nguyen and T. Tasdizen and D.A. Quistberg ", title = "Road Traffic Injuries and the Built Environment in Bogotá, Colombia, 2015–2019: A Cross-Sectional Analysis", journal = "Journal of Urban Health", year = "2024", publisher = "Springer", url = "https://publications.utah.edu/publications/Zew2024a/s11524-024-00842-2.pdf", } @Misc{SCI:Ada2023a, author = "J. Adams and S. Elhabian", title = "Fully Bayesian VIB-DeepSSM", subtitle = "arXiv:2305.05797", year = "2023", url = "https://publications.utah.edu/publications/Ada2023a/2305.05797.pdf", } @Misc{SCI:Ada2023b, author = "J. Adams and S. Elhabian", title = "Can point cloud networks learn statistical shape models of anatomies?", subtitle = "arXiv:2305.05610", year = "2023", url = "https://publications.utah.edu/publications/Ada2023b/2305.05610.pdf", } @Misc{SCI:Ada2023c, author = "J. Adams and S. Elhabian", title = "Point2SSM: Learning Morphological Variations of Anatomies from Point Cloud", subtitle = "arXiv:2305.14486", year = "2023", url = "https://publications.utah.edu/publications/Ada2023c/2305.14486.pdf", } @Misc{SCI:Ada2023d, author = "J. Adams and S.Y. Elhabian", title = "Benchmarking Scalable Epistemic Uncertainty Quantification in Organ Segmentation", subtitle = "arXiv:2308.07506", year = "2023", url = "https://publications.utah.edu/publications/Ada2023d/2308.07506.pdf", } @InProceedings{SCI:Ada2023e, author = "M. Adair and I. Rodero and M. Parashar and D. Melgar", title = "Accelerating Data-Intensive Seismic Research Through Parallel Workflow Optimization and Federated Cyberinfrastructure", booktitle = "Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis", pages = "1970--1977", year = "2023", publisher = "ACM", url = "https://publications.utah.edu/publications/Ada2023e/3624062.3624276.pdf", } @InProceedings{SCI:Akb2023a, author = "D. Akbaba and D. Lange and M. Correll and A. Lex and M. Meyer", title = "Troubling Collaboration: Matters of Care for Visualization Design Study", booktitle = "Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems (CHI ’23),", pages = "23--28", year = "2023", month = "April", url = "https://publications.utah.edu/publications/Akb2023a/preprint_2022_paper_troubling_collaboration.pdf", } @Article{SCI:Ali2023a, author = "M. Aliakbari and M.S. Sadrabadi and P. Vadasz and A. Arzani", title = "Ensemble physics informed neural networks: A framework to improve inverse transport modeling in heterogeneous domains", journal = "Physics of Fluids", year = "2023", publisher = "AIP", url = "https://publications.utah.edu/publications/Ali2023a/053616_1_5.0150016.pdf", } @Misc{SCI:Arz2023a, author = "A. Arzani and L. Yuan and P. Newell and B. Wang", title = "Interpreting and generalizing deep learning in physics-based problems with functional linear models", subtitle = "arXiv:2307.04569", year = "2023", url = "https://publications.utah.edu/publications/Arz2023a/2307.04569.pdf", } @Article{SCI:Ath2023a, author = "T. M. Athawale and C.R. Johnson and S. Sane and and D. Pugmire", title = "Fiber Uncertainty Visualization for Bivariate Data With Parametric and Nonparametric Noise Models", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "29", number = "1", pages = "613-23", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Ath2023a/Fiber-Uncertainty.pdf", } @Misc{SCI:Azi2023a, author = "A.Z.B. Aziz and J. Adams and S. Elhabian", title = "Progressive DeepSSM: Training Methodology for Image-To-Shape Deep Models", subtitle = "arXiv:2310.01529", year = "2023", url = "https://publications.utah.edu/publications/Azi2023a/2310.01529.pdf", } @Article{SCI:Bak2023a, author = "J. Baker and E. Cherkaev and A. Narayan and B. Wang", title = "Learning Proper Orthogonal Decomposition of Complex Dynamics Using Heavy-ball Neural ODEs", journal = "Journal of Scientific Computing", volume = "95", number = "14", year = "2023", url = "https://publications.utah.edu/publications/Bak2023a/s10915-023-02176-8.pdf", } @Article{SCI:Bei2023a, author = "J.W. Beiriger and W. Tao and M.K. Bruce and E. Anstadt and C. Christiensen and J. Smetona and R. Whitaker and J. Goldstein", title = "CranioRate TM: An Image-Based, Deep-Phenotyping Analysis Toolset and Online Clinician Interface for Metopic Craniosynostosis", journal = "Plastic and Reconstructive Surgery", year = "2023", url = "https://publications.utah.edu/publications/Bei2023a/CranioRate.pdf", } @InProceedings{SCI:Ber2023a, author = "M. Berzins", title = "Error Estimation for the Material Point and Particle in Cell Methods", title_url = "https://www.scipedia.com/public/Berzins_2023a", booktitle = "admos2023", year = "2023", url = "https://publications.utah.edu/publications/Ber2023a/Draft_Sanchez_Pinedo_8264634426_file.pdf", } @Article{SCI:Ber2023b, author = "J. A. Bergquist and B. Zenger and L. Rupp and A. Busatto and J. D. Tate and D. H. Brooks and A. Narayan and R. MacLeod", title = "Uncertainty quantification of the effect of cardiac position variability in the inverse problem of electrocardiographic imaging", journal = "Journal of Physiological Measurement", year = "2023", publisher = "IOP Science", url = "https://publications.utah.edu/publications/Ber2023b/Bergquistetal_2023.pdf", } @InProceedings{SCI:Ber2023c, author = "M. Berzins", title = "COMPUTATIONAL ERROR ESTIMATION FOR THE MATERIAL POINT METHOD IN 1D AND 2D", booktitle = "VIII International Conference on Particle-Based Methods, PARTICLES 2023", booktitle_url = "https://www.scipedia.com/public/Berzins_2023b", journal = "Particles 2023", year = "2023", url = "https://publications.utah.edu/publications/Ber2023c/Berzins_2023b.pdf", } @Article{SCI:Bid2023a, author = "T.C. Bidone and D.J. Odde", title = "Multiscale models of integrins and cellular adhesions", journal = "Current Opinion in Structural Biology", volume = "80", year = "2023", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Bid2023a/1-s2.0-S0959440X23000507-main.pdf", } @Article{SCI:Bor2023a, author = "B. Borotikar and T.E.M. Mutsvangwa and S..Y Elhabian and E.Audenaert ", title = "Editorial: Statistical model-based computational biomechanics: applications in joints and internal organs", title_url = "https://www.frontiersin.org/articles/10.3389/fbioe.2023.1232464/full", journal = "Frontiers in Bioengineering and Biotechnology", volume = "11", year = "2023", } @Article{SCI:Bou2023a, author = "N. Boukhelifa and C. R. Johnson and K. Potter", title = "Visualization and Decision Making Design Under Uncertainty", journal = "IEEE Computer Graphics and Applications", volume = "43", pages = "23--25", year = "2023", publisher = "IEEE", month = "Sep", issn = "0272-1716", url = "https://publications.utah.edu/publications/Bou2023a/Visualization_and_Decision_Making_Design_Under_Uncertainty.pdf", } @InProceedings{SCI:Bri2023a, author = "S. Brink and M. McKinsey and D. Boehme and C. Scully-Allison and I. Lumsden and D. Hawkins and T. Burgess and V. Lama and J. Luettgau and K.E. Isaacs and M. Taufer and O. Pearce", title = "Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees", booktitle = "HPDC ’23", year = "2023", publisher = "ACM", url = "https://publications.utah.edu/publications/Bri2023a/brink_thicket_hpdc2023.pdf", } @Article{SCI:Cam2023a, author = " S. Campbell and M. C. Mendoza and A. Rammohan and M. E. McKenzie and T. C. Bidone", title = "Computational model of integrin adhesion elongation under an actin fiber", journal = "PLOS Computatonal Biology", volume = "19", number = "7", pages = "1-19", year = "2023", publisher = "Public Library of Science", month = "7", url = "https://publications.utah.edu/publications/Cam2023a/journal.pcbi.1011237.pdf", } @Article{SCI:Car2023a, author = "K.R. Carney and A.M. Khan and S. Stam and S.C. Samson and N. Mittal and S. Han and T.C. Bidone and M. Mendoza", title = "Nascent adhesions shorten the period of lamellipodium protrusion through the Brownian ratchet mechanism", journal = "Mol Biol Cell", year = "2023", url = "https://publications.utah.edu/publications/Car2023a/carney-et-al-2023.pdf", } @Article{SCI:Cha2023a, author = "B. Charoenwong and R.M. Kirby and J. Reiter", title = "Computer Science Abstractions To Help Reason About Decentralized Stablecoin Design", journal = "IEEE Access", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Cha2023a/Decentralized_Stablecoin_Design.pdf", } @InProceedings{SCI:Csa2023a, author = "H. Csala and A. Mohan and D. Livescu and A. Arzani", title = "Modeling Coupled 1D PDEs of Cardiovascular Flow with Spatial Neural ODEs", booktitle = "Machine Learning and the Physical Sciences Workshop, NeurIPS 2023", year = "2023", url = "https://publications.utah.edu/publications/Csa2023a/NeurIPS_ML4PS_2023_77.pdf", } @Misc{SCI:Dai2023a, author = "H. Dai and M. Penwarden and R.M. Kirby and S. Joshi", title = "Neural Operator Learning for Ultrasound Tomography Inversion", subtitle = "arXiv:2304.03297v1", year = "2023", url = "https://publications.utah.edu/publications/Dai2023a/2304.03297.pdf", } @InProceedings{SCI:Dai2023b, author = "H. Dai and M. Bauer and P.T. Fletcher and S. Joshi", title = "Modeling the Shape of the Brain Connectome via Deep Neural Networks", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-34048-2_23", booktitle = "Information Processing in Medical Imaging", pages = "291--302", year = "2023", publisher = "Springer Nature Switzerland", isbn = "978-3-031-34048-2", } @InProceedings{SCI:Dai2023c, author = "D. Dai and Y. Epshteyn and A. Narayan", title = "Energy Stable and Structure-Preserving Schemes for the Stochastic Galerkin Shallow Water Equations", subtitle = "arXiv:2310.06229", year = "2023", url = "https://publications.utah.edu/publications/Dai2023c/2310.06229.pdf", } @Article{SCI:Dai2023d, author = "H. Dai and V. Sarkar and C. Dial and M.D. Foote and Y. Hitchcock and S. Joshi and B. Salter", title = "High-Fidelity CT on Rails-Based Characterization of Delivered Dose Variation in Conformal Head and Neck Treatments", journal = "Applied Radiation Oncology", year = "2023", url = "https://publications.utah.edu/publications/Dai2023d/ARO-D-23-00013.pdf", } @Misc{SCI:Din2023a, author = "Y. Ding and J. Wilburn and H. Shrestha and A. Ndlovu and K. Gadhave and C. Nobre and A. Lex and L. Harrison", title = "reVISit: Supporting Scalable Evaluation of Interactive Visualizations", subtitle = "OSF Preprints", year = "2023", url = "https://publications.utah.edu/publications/Din2023a/2023_VIS_ReVISIT-1.pdf", } @Misc{SCI:Dub2023a, author = "S. Dubey and T. Kataria and B. Knudsen and S.Y. Elhabian", title = "Structural Cycle GAN for Virtual Immunohistochemistry Staining of Gland Markers in the Colon", subtitle = "arXiv:2308.13182", year = "2023", url = "https://publications.utah.edu/publications/Dub2023a/2308.13182.pdf", } @Article{SCI:Fal2023a, author = "M. Falk and V. Tobiasson and A. Bock and C. Hansen and A. Ynnerman", title = "A Visual Environment for Data Driven Protein Modeling and Validation", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "1-11", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Fal2023a/fal2023a.pdf", } @Article{SCI:Fan2023a, author = "S. Fang and S. Zhe and H.M. Lin and A.A. Azad and H. Fettke and E.M. Kwan and L. Horvath and B. Mak and T. Zheng and P. Du and S. Jia and R.M. Kirby and M. Kohli", title = "Multi-Omic Integration of Blood-Based Tumor-Associated Genomic and Lipidomic Profiles Using Machine Learning Models in Metastatic Prostate Cancer", journal = "Clinical Cancer Informatics", year = "2023", url = "https://publications.utah.edu/publications/Fan2023a/cci.23.00057.pdf", } @Misc{SCI:Fan2023b, author = "S. Fang and X. Yu and S. Li and Z. Wang and R. Kirby and S. Zhe", title = "Streaming Factor Trajectory Learning for Temporal Tensor Decomposition", subtitle = "arxiv.org/abs/2310.17021", year = "2023", url = "https://publications.utah.edu/publications/Fan2023b/2310.17021.pdf", } @Misc{SCI:Fan2023c, author = "S. Fang and M. Cooley and D. Long and S. Li and R. Kirby and S. Zhe", title = "Solving High Frequency and Multi-Scale PDEs with Gaussian Processes", subtitle = "arXiv:2311.04465", year = "2023", url = "https://publications.utah.edu/publications/Fan2023c/2311.04465.pdf", } @InProceedings{SCI:Hal2023a, author = "M. Hall and G. Gopalakrishnan and E. Eide and J. Cohoon and J. Phillips and M. Zhang and S. Elhabian and A. Bhaskara and H. Dam and A. Yadrov and T. Kataria", title = "An NSF REU Site Based on Trust and Reproducibility of Intelligent Computation: Experience Report", booktitle = "Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis", year = "2023", url = "https://publications.utah.edu/publications/Hal2023a/3624062.3624100.pdf", } @Misc{SCI:Han2023a, author = "R. Han and A. Narayan and Y. Xu", title = "An approximate control variates approach to multifidelity distribution estimation", subtitle = "arXiv:2303.06422v1", year = "2023", url = "https://publications.utah.edu/publications/Han2023a/2303.06422.pdf", } @Article{SCI:Hic2023a, author = "K. G. Hicks and A. A. Cluntun and H. L. Schubert and S. R. Hackett and J. A. Berg and P. G. Leonard and M. A. Ajalla Aleixo and Y. Zhou and A. J. Bott and S. R. Salvatore and F. Chang and A. Blevins and P. Barta and S. Tilley and A. Leifer and A. Guzman and A. Arok and S. Fogarty and J. M. Winter and H. Ahn and K. N. Allen and S. Block and I. A. Cardoso and J. Ding and I. Dreveny and C. Gasper and Q. Ho and A. Matsuura and M. J. Palladino and S. Prajapati and P. Sun and K. Tittmann and D. R. Tolan and J. Unterlass and A. P. VanDemark and M. G. Vander Heiden and B. A. Webb and C. Yun and P. Zhap and B. Wang and F. J. Schopfer and C. P. Hill and M. C. Nonato and F. L. Muller and J. E. Cox and J. Rutter", title = "Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase", journal = "Science", volume = "379", number = "6636", pages = "996-1003", year = "2023", url = "https://publications.utah.edu/publications/Hic2023a/Protein-metabolite.pdf", } @Article{SCI:Hoa2023a, author = "D. Hoang and H. Bhatia and P. Lindstrom and V. Pascucci", title = "Progressive Tree-Based Compression of Large-Scale Particle Data", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "1--18", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Hoa2023a/hoa2023a.pdf", } @InProceedings{SCI:Hol2023a, author = "J. K. Holmen and V. G. Vergara Larrea and E. W. Draeger and E. T. Phipps and P. J. Smith and M. Berzins and S. T. Smith and J. N. Thornock and S. Parete-Koon", title = "Strengthening the US Department of Energy's Recruitment Pipeline: The DOE/NNSA Predictive Science Academic Alliance Program (PSAAP) Experience", booktitle = "Practice and Experience in Advanced Research Computing", pages = "137--144", year = "2023", publisher = "ACM", url = "https://publications.utah.edu/publications/Hol2023a/3569951.3593606.pdf", } @Article{SCI:Hu2023a, author = "M. Hu and K. Zhang and Q. Nguyen and T. Tasdizen", title = "The effects of passive design on indoor thermal comfort and energy savings for residential buildings in hot climates: A systematic review", journal = "Urban Climate", volume = "49", pages = "101466", year = "2023", url = "https://publications.utah.edu/publications/Hu2023a/1-s2.0-S2212095523000603-main.pdf", } @Article{SCI:Hur2023a, author = "E. R. Hurd and M. Han and J. K. Mendes and J. R. Hadley and C. R. Johnson and E. V. R. DiBella and J. N. Oshinski and L. H. Timmins", title = "Comparison of Prospective and Retrospective Gated 4D Flow Cardiac MR Image Acquisitions in the Carotid Bifurcation", title_url = "https://pubmed.ncbi.nlm.nih.gov/35618870/", journal = "Cardiovascular Engineering and Technology", volume = "14", number = "1", pages = "1--12", year = "2023", publisher = "Springer Nature", month = "Feb", issn = "1869-408X", } @Misc{SCI:Iye2023a, author = "K. Iyer and S. Elhabian", title = "Mesh2SSM: From Surface Meshes to Statistical Shape Models of Anatomy", subtitle = "arXiv:2305.07805", year = "2023", url = "https://publications.utah.edu/publications/Iye2023a/2305.07805.pdf", } @InBook{SCI:Joh2023a, author = "C. R. Johnson and H. Shen", title = "AI for Scientific Visualization", booktitle = "Artificial Intelligence for Science", pages = "535-552", year = "2023", editor = "Alok Choudhary, Geoffrey Fox, and Tony Hey", publisher = "World Scientific", } @Article{SCI:Joh2023b, author = "S. Johnson and B. Zimmerman and H. Odéen and J. Shea and N. Winkler and R. Factor and S. Joshi and A. Payne", title = "A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies", journal = "IEEE Transactions on Biomedical Engineering", pages = "1--12", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Joh2023b/Joh2023b.pdf", } @Article{SCI:Kam2023a, author = "R. Kamali and E. Kwan and M. Regouski and T.J. Bunch and D.J. Dosdall and E. Hsu and R. S. Macleod and I. Polejaeva and R. Ranjan", title = "Contribution of atrial myofiber architecture to atrial fibrillation", journal = "PLOS ONE", volume = "18", number = "1", pages = "1--16", year = "2023", publisher = "Public Library of Science", month = "Jan", url = "https://publications.utah.edu/publications/Kam2023a/journal.pone.0279974.pdf", } @Misc{SCI:Kar2023a, author = "M.S.T. Karanam and T. Kataria and S. Elhabian", title = "ADASSM: Adversarial Data Augmentation in Statistical Shape Models From Images", subtitle = "arXiv:2307.03273v2", year = "2023", url = "https://publications.utah.edu/publications/Kar2023a/2307.03273.pdf", } @Article{SCI:Kas2023a, author = "D.J. Kasik and M.C. Whitton and C.R. Johnson", title = "The Big 50: Celebrating 50 ACM SIGGRAPH Conferences", title_url = "https://ieeexplore.ieee.org/document/10123378", journal = "IEEE Computer Graphics and Applications", volume = "43", year = "2023", publisher = "IEEE", issn = "0272-1716", } @Misc{SCI:Kat2023a, author = "T. Kataria and S. Rajamani and A.B. Ayubi and M. Bronner and J. Jedrzkiewicz and B. Knudsen and S. Elhabian", title = "Automating Ground Truth Annotations For Gland Segmentation Through Immunohistochemistry", year = "2023", url = "https://publications.utah.edu/publications/Kat2023a/922e3dc92911134add1d059a.pdf", } @Misc{SCI:Kat2023b, author = "T. Kataria and B. Knudsen and S. Elhabian", title = "Unsupervised Domain Adaptation for Semantic Segmentation via Feature-space Density Matching", subtitle = "arXiv:2305.05789", year = "2023", url = "https://publications.utah.edu/publications/Kat2023b/2305.05789.pdf", } @Misc{SCI:Kat2023c, author = "T. Kataria and B. Knudsen and S. Elhabian", title = "To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathology", subtitle = "arXiv:2307.03275", year = "2023", url = "https://publications.utah.edu/publications/Kat2023c/2307.03275.pdf", } @Article{SCI:Lev2023a, author = "S. Leventhal and A. Gyulassy and M. Heimann and V. Pascucci", title = "Exploring Classification of Topological Priors with Machine Learning for Feature Extraction", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "1--12", year = "2023", url = "https://publications.utah.edu/publications/Lev2023a/lev2023a.pdf", } @Misc{SCI:Li2023a, author = "J. Li and A. Pepe and C. Gsaxner and G. Luijten and Y. Jin and S. Elhabian and et. al.", title = "MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision", subtitle = "arXiv:2308.16139v3", year = "2023", url = "https://publications.utah.edu/publications/Li2023a/2308.16139.pdf", } @Misc{SCI:Li2023b, author = "S. Li and X. Yu and W. Xing and R.M. Kirby and A. Narayan and S. Zhe", title = "Multi-Resolution Active Learning of Fourier Neural Operators", subtitle = "arXiv:2309.16971", year = "2023", url = "https://publications.utah.edu/publications/Li2023b/2309.16971.pdf", } @Misc{SCI:Li2023c, author = "Z. Li and S. Liu and K. Bhavya and T. Bremer and V. Pascucci", title = "Instance-wise Linearization of Neural Network for Model Interpretation", subtitle = "arXiv:2310.16295v1", year = "2023", url = "https://publications.utah.edu/publications/Li2023c/2310.16295.pdf", } @Misc{SCI:Lin2023a, author = "H. Lin and M. Lisnic and D. Akbaba and M. Meyer and A. Lex", title = "Here’s what you need to know about my data: Exploring Expert Knowledge’s Role in Data Analysis", year = "2023", url = "https://publications.utah.edu/publications/Lin2023a/lin2023a.pdf", } @Article{SCI:Lis2023a, author = "M. Lisnic and A. Lex and M. Kogan", title = ""Yeah, this graph doesn't show that": Analysis of Online Engagement with Misleading Data Visualizations", journal = "OSF Preprints", year = "2023", url = "https://publications.utah.edu/publications/Lis2023a/preprint-2.pdf", } @Misc{SCI:Liu2023a, author = "AVA: Towards Autonomous Visualization Agents through Visual Perception-Driven Decision-Making", title = "S. Liu, H. Miao, Z. Li, M. Olson, V. Pascucci, P.T. Bremer", subtitle = "arXiv preprint arXiv:2312.04494", year = "2023", url = "https://publications.utah.edu/publications/Liu2023a/2312.04494v1.pdf", } @Misc{SCI:Lon2023a, author = "D. Long and W.W. Xing and A.S. Krishnapriyan and R.M. Kirby and S. Zhe and M.W. Mahoney", title = "Equation Discovery with Bayesian Spike-and-Slab Priors and Efficient Kernels", subtitle = "arXiv:2310.05387v1", year = "2023", url = "https://publications.utah.edu/publications/Lon2023a/2310.05387.pdf", } @InProceedings{SCI:Lue2023a, author = "J. Luettgau and G. Scorzelli and V. Pascucci and M. Taufer", title = "Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to Democratize Access to Platforms and Data", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-34668-2_25", booktitle = "Distributed, Ambient and Pervasive Interactions", pages = "378--389", year = "2023", publisher = "Springer Nature Switzerland", isbn = "978-3-031-34668-2", } @InProceedings{SCI:Lue2023b, author = "J. Luettgau and H. Martinez and G. Tarcea and G. Scorzelli and V. Pascucci and M. Taufer", title = "Studying Latency and Throughput Constraints for Geo-Distributed Data in the National Science Data Fabric", booktitle = "Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing", pages = "325–326", year = "2023", publisher = "ACM", url = "https://publications.utah.edu/publications/Lue2023b/3588195.3595948.pdf", } @Article{SCI:Ly2023a, author = "C. Ly and C. Nizinski and A. Hagen and L. McDonald IV and T. Tasdizen", title = "Improving Robustness for Model Discerning Synthesis Process of Uranium Oxide with Unsupervised Domain Adaptation", title_url = "https://www.frontiersin.org/articles/10.3389/fnuen.2023.1230052/abstract", journal = "Frontiers in Nuclear Engineering", year = "2023", } @Article{SCI:Mcd2023a, author = "L.W. McDonald IV and K. Sentz and A. Hagen and B.W. Chung and T. Tasdizen and et. al.", title = "Review of Multi-Faceted Morphologic Signatures of Actinide Process Materials for Nuclear Forensic Science", journal = "Journal of Nuclear Materials", year = "2023", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Mcd2023a/1-s2.0-S0022311523005469-main.pdf", } @Article{SCI:Mor2023a, author = "N. Morrical and S. Zellmann and A. Sahistan and P. Shriwise and V. Pascucci", title = "Attribute-Aware RBFs: Interactive Visualization of Time Series Particle Volumes Using RT Core Range Queries", journal = "IEEE Trans Vis Comput Graph", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Mor2023a/AARBF.pdf", } @Article{SCI:Nje2023a, author = "D. K. Njeru and T. M. Athawale and J. J. France and C. R. Johnson", title = "Quantifying and Visualizing Uncertainty for Source Localisation in Electrocardiographic Imaging", journal = "Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization", volume = "11", number = "3", pages = "812--822", year = "2023", publisher = "Taylor & Francis", month = "May", issn = "2168-1163", url = "https://publications.utah.edu/publications/Nje2023a/Quantifying and Visualizing Uncertainty for Source Localisation in Electrocardiographic Imaging.pdf", } @Misc{SCI:Oh2023a, author = "H. Oh and R. Amici and G. Bomarito and S. Zhe and R. Kirby and J. Hochhalter", title = "Genetic Programming Based Symbolic Regression for Analytical Solutions to Differential Equations", subtitle = "arXiv:2302.03175v1", year = "2023", url = "https://publications.utah.edu/publications/Oh2023a/2302.03175.pdf", } @Article{SCI:Oh2023b, author = "H. Oh and R. Amici and G. Bomarito and S. Zhe and R.M. Kirby and J. Hochhalter", title = "Inherently interpretable machine learning solutions to differential equations", title_url = "https://link.springer.com/article/10.1007/s00366-023-01915-7", journal = "Engineering with Computers", year = "2023", } @InProceedings{SCI:Ork2023a, author = "B.A. Orkild and J.A. Bergquist and E.N. Paccione and M. Lange and E. Kwan and B. Hunt and R. MacLeod and A. Narayan and R. Ranjan", title = "A Grid Search of Fibrosis Thresholds for Uncertainty Quantification in Atrial Flutter Simulations", booktitle = "Computing in Cardiology", year = "2023", url = "https://publications.utah.edu/publications/Ork2023a/348_CinCFinalPDF.pdf", } @Article{SCI:Oue2023a, author = "T. A. J. Ouermi and R. M Kirby and M. Berzins", title = "HiPPIS A High-Order Positivity-Preserving Mapping Software for Structured Meshes", journal = "ACM Trans. Math. Softw", year = "2023", publisher = "ACM", month = "Nov", issn = "0098-3500", url = "https://publications.utah.edu/publications/Oue2023a/HiPPIS.pdf", } @InBook{SCI:Par2023a, author = "M. Parashar and T. Kurc and H. Klie and M.F. Wheeler and J.H. Saltz and M. Jammoul and R. Dong", title = "Dynamic Data-Driven Application Systems for Reservoir Simulation-Based Optimization: Lessons Learned and Future Trends", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-27986-7_11", booktitle = "Handbook of Dynamic Data Driven Applications Systems: Volume 2", pages = "287--330", year = "2023", publisher = "Springer International Publishing", } @InProceedings{SCI:Par2023b, author = "M. Parashar and I. Altintas", title = "Toward Democratizing Access to Science Data: Introducing the National Data Platform", title_url = "https://www.computer.org/csdl/proceedings-article/e-science/2023/10254930/1QJgh9gXOAU", booktitle = " IEEE 19th International Conference on e-Science", year = "2023", publisher = "IEEE", } @Article{SCI:Par2023c, author = "M. Parashar and T. deBlanc-Knowles and E. Gianchandani and L.E. Parker", title = "Strengthening and Democratizing Artificial Intelligence Research and Development", journal = "Computer", volume = "56", number = "11", pages = "85-90", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Par2023c/10286256.pdf", } @Article{SCI:Pen2023a, author = "M. Penwarden and S. Zhe and A. Narayan and R.M. Kirby", title = "A Metalearning Approach for Physics-Informed Neural Networks (PINNs): Application to Parameterized PDEs", journal = "Journal of Computational Physics", year = "2023", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Pen2023a/1-s2.0-S0021999123000074-main.pdf", } @Misc{SCI:Pen2023b, author = "M. Penwarden and A.D. Jagtap and S. Zhe and G.E. Karniadakis and R.M. Kirby", title = "A unified scalable framework for causal sweeping strategies for Physics-Informed Neural Networks (PINNs) and their temporal decompositions", subtitle = "arXiv:2302.14227v1", year = "2023", url = "https://publications.utah.edu/publications/Pen2023b/2302.14227.pdf", } @InProceedings{SCI:Pet2023a, author = "C. Peters and T. Patel and W. Usher and C R. Johnson", title = "Ray Tracing Spherical Harmonics Glyphs", booktitle = "Vision, Modeling, and Visualization", year = "2023", publisher = "The Eurographics Association", url = "https://publications.utah.edu/publications/Pet2023a/021-031.pdf", } @InProceedings{SCI:Pet2023b, author = "S. Petruzza and B. Summa and A. Gooch and C.M. Laney and T. Goulden and J. Schreiner and S. Callahan and V. Pascucci", title = "Interactive Visualization and Portable Image Blending of Massive Aerial Image Mosaics", title_url = "https://www.computer.org/csdl/proceedings-article/bigdata/2023/10386428/1TUPeEFPVcY", booktitle = "IEEE International Conference on Big Data", pages = "3365-3370", year = "2023", publisher = "IEEE", } @Article{SCI:Pir2023a, author = "S. Pirola and A. Arzani and C. Chiastra and F. Sturla", title = "Editorial: Image-based computational approaches for personalized cardiovascular medicine: improving clinical applicability and reliability through medical imaging and experimental data", journal = "Frontiers in Medical Technology", volume = "5", year = "2023", url = "https://publications.utah.edu/publications/Pir2023a/fmedt-05-1222837.pdf", } @Article{SCI:Sah2023a, author = "S. Saha and W. Gazi and R. Mohammed and T. Rapstine and H. Powers and R. Whitaker", title = "Multi-task Training as Regularization Strategy for Seismic Image Segmentation", journal = "IEEE Geoscience and Remote Sensing Letters", volume = "20", pages = "1--5", year = "2023", publisher = "IEEE", url = "https://publications.utah.edu/publications/Sah2023a/Multitask_Training.pdf", } @Misc{SCI:Sah2023b, author = "S. Saha and S. Joshi and R. Whitaker", title = "Matching aggregate posteriors in the variational autoencoder", subtitle = "arXiv preprint arXiv:2311.07693", year = "2023", url = "https://publications.utah.edu/publications/Sah2023b/2311.07693v1.pdf", } @Misc{SCI:Sha2023a, author = "M. Shao and T. Tasdizen and S. Joshi", title = "Analyzing the Domain Shift Immunity of Deep Homography Estimation", subtitle = "arXiv:2304.09976v1", year = "2023", url = "https://publications.utah.edu/publications/Sha2023a/2304.09976.pdf", } @InProceedings{SCI:Shi2023a, author = "N. Shingde and M. Berzins and T. Blattner and W. Keyrouz and A. Bardakoff", title = "Extending Hedgehog’s dataflow graphs to multi-node GPU architectures", booktitle = "Workshop on Asynchronous Many-Task Systems and Applications (WAMTA23)", year = "2023", url = "https://publications.utah.edu/publications/Shi2023a/shi2023a.pdf", } @Misc{SCI:Shu2023a, author = "K. Shukla and V. Oommen and A. Peyvan and M. Penwarden and L. Bravo and A. Ghoshal and R.M. Kirby and G. Karniadakis", title = "Deep neural operators can serve as accurate surrogates for shape optimization: A case study for airfoils", subtitle = "arXiv:2302.00807v1", year = "2023", url = "https://publications.utah.edu/publications/Shu2023a/2302.00807.pdf", } @Article{SCI:Shu2023b, author = "K. Shukla and V. Oommen and A. Peyvan and M. Penwarden and N. Plewacki and L. Bravo and A. Ghoshal and R.M. Kirby and G. Karniadakis", title = "Deep neural operators as accurate surrogates for shape optimization", journal = "Engineering Applications of Artificial Intelligence", volume = "129", pages = "107615", year = "2023", issn = "0952-1976", url = "https://publications.utah.edu/publications/Shu2023b/shukla.pdf", } @InProceedings{SCI:Sic2023a, author = "C. Sicari and A. Catalfamo and L. Carnevale and A. Galletta and D. Balouek-Thomert and M. Parashar and M. Villari", title = "TEMA: Event Driven Serverless Workflows Platform for Natural Disaster Management", booktitle = "2023 IEEE Symposium on Computers and Communications (ISCC)", pages = "1-6", year = "2023", url = "https://publications.utah.edu/publications/Sic2023a/sic2023a.pdf", } @InProceedings{SCI:Sic2023b, author = "C. Sicari and D. Balouek and M. Villari and M. Parashar", title = "Event-Driven FaaS Workflows for Enabling IoT Data Processing at the Cloud Edge Continuum", booktitle = "CC 2023 - International Conference on Utility and Cloud Computing", year = "2023", url = "https://publications.utah.edu/publications/Sic2023b/UCC2023_Rpulsar-Faas.pdf", } @Misc{SCI:Sul2023a, author = "K.M.A. Sultan and B. Orkild and A. Morris and E. Kholmovski and E. Bieging and E. Kwan and R. Ranjan and E. DiBella and s. Elhabian", title = "Two-Stage Deep Learning Framework for Quality Assessment of Left Atrial Late Gadolinium Enhanced MRI Images", subtitle = "arXiv:2310.08805v1", year = "2023", url = "https://publications.utah.edu/publications/Sul2023a/2310.08805.pdf", } @Misc{SCI:Sul2023b, author = "K.M.A.Sultan and B. Orkild and A. Morris and E. Kholmovski and E. Bieging and E. Kwan and R. Ranjan and E. DiBella and S. Elhabian", title = "Two-Stage Deep Learning Framework for Quality Assessment of Left Atrial Late Gadolinium Enhanced MRI Images", subtitle = "arXiv:2310.08805", year = "2023", url = "https://publications.utah.edu/publications/Sul2023b/2310.08805v1.pdf", } @Article{SCI:Sun2023a, author = "T. Sun and D. Li and B. Wang", title = "On the Decentralized Stochastic Gradient Descent with Markov Chain Sampling", journal = "IEEE Transactions on Signal Processing", year = "2023", publisher = "IEEE", month = "July", url = "https://publications.utah.edu/publications/Sun2023a/ieee-tsp.pdf", } @Article{SCI:Sun2023b, author = "T. Sun and Q. Wang and Y. Lei and D. Li and B. Wang", title = "Pairwise Learning with Adaptive Online Gradient Descent", journal = "Transactions on Machine Learning Research", year = "2023", url = "https://publications.utah.edu/publications/Sun2023b/output1.pdf", } @Article{SCI:Tat2023a, author = "J. Tate and Z. Liu and J.A. Bergquist and S. Rampersad and D. White and C. Charlebois and L. Rupp and D. Brooks and R. MacLeod and A. Narayan", title = "UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines", journal = "Journal of Open Source Software", volume = "8", number = "90", year = "2023", url = "https://publications.utah.edu/publications/Tat2023a/joss.04249.pdf", } @InProceedings{SCI:Toh2023a, author = "R. Tohid and S. Shirzad and C. Taylor and S.A. Sakin and K.E. Isaacs and H. Kaiser", title = "Halide Code Generation Framework in Phylanx", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-31209-0_3", booktitle = "Euro-Par 2022: Parallel Processing Workshops", pages = "32--45", year = "2023", publisher = "Springer Nature Switzerland", isbn = "978-3-031-31209-0", } @InProceedings{SCI:Uke2023a, author = "J Ukey and S Elhabian", title = "Image2SSM: Localization-aware Deep Learning Framework for Statistical Shape Modeling Directly from Images", booktitle = "Proceedings of Machine Learning Research ", journal = "Medical Imaging with Deep Learning", year = "2023", url = "https://publications.utah.edu/publications/Uke2023a/ukey24a.pdf", } @InProceedings{SCI:Wan2023a, author = "Z. Wang and T. M. Athawale and K. Moreland and J. Chen and C. R. Johnson and D. Pugmire", title = "FunMC2: A Filter for Uncertainty Visualization of Marching Cubes on Multi-Core Devices", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization", year = "2023", url = "https://publications.utah.edu/publications/Wan2023a/FunMC2.pdf", } @InProceedings{SCI:Wil2023a, author = "K. Williams and A. Bigelow and K.E. Isaacs", title = "Data Abstraction Elephants: The Initial Diversity of Data Representations and Mental Models", booktitle = "Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems (CHI ’23)", year = "2023", publisher = "ACM", url = "https://publications.utah.edu/publications/Wil2023a/3544548.3580669.pdf", } @Misc{SCI:Xu2023a, author = "H. Xu and S. Elhabian", title = "Image2SSM: Reimagining Statistical Shape Models from Images with Radial Basis Functions", subtitle = "arXiv:2305.11946", year = "2023", url = "https://publications.utah.edu/publications/Xu2023a/2305.11946.pdf", } @Article{SCI:Xu2023b, author = "H. Xu and A. Morris and S.Y. Elhabian", title = "Particle-Based Shape Modeling for Arbitrary Regions-of-Interest", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-46914-5_4", journal = "Shape in Medical Imaging, Lecture Notes in Computer Science, vol 14350", year = "2023", } @InProceedings{SCI:Zha2023a, author = "B. Zhang and P.E. Davis and N. Morales and Z. Zhang and K. Teranishi and M. Parashar", title = "Optimizing Data Movement for GPU-Based In-Situ Workflow Using GPUDirect RDMA", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-39698-4_22", booktitle = "Euro-Par 2023: Parallel Processing", pages = "323--338", year = "2023", publisher = "Springer Nature Switzerland", isbn = "978-3-031-39698-4", } @Misc{SCI:Zha2023b, author = "B. Zhang and H. Manoochehri and M.M. Ho and F. Fooladgar and Y. Chong and B. Knudsen and D. Sirohi and T. Tasdizen", title = "CLASSMix: Adaptive stain separation-based contrastive learning with pseudo labeling for histopathological image classification", subtitle = "arXiv:2312.06978v2", year = "2023", url = "https://publications.utah.edu/publications/Zha2023b/2312.06978.pdf", } @Article{SCI:Zho2023a, author = "N. Zhou and G. Scorzelli and J. Luettgau and R.R. Kancharla and J. Kane and R. Wheeler and B. Croom and B. Newell and V. Pascucci and M. Taufer", title = "Orchestration of materials science workflows for heterogeneous resources at large scale", title_url = "https://journals.sagepub.com/doi/full/10.1177/10943420231167800", journal = "The International Journal of High Performance Computing Applications", year = "2023", publisher = "Sage", } @Misc{SCI:Ada2022a, author = "J. Adams and N. Khan and A. Morris and S. Elhabian", title = "Spatiotemporal Cardiac Statistical Shape Modeling: A Data-Driven Approach", subtitle = "arXiv preprint arXiv:2209.02736", year = "2022", url = "https://publications.utah.edu/publications/Ada2022a/2209.02736.pdf", } @Misc{SCI:Ali2022a, author = "M. Alirezaei and T. Tasdizen", title = "Adversarially Robust Classification by Conditional Generative Model Inversion", subtitle = "arXiv preprint arXiv:2201.04733", year = "2022", url = "https://publications.utah.edu/publications/Ali2022a/2201.04733.pdf", } @Article{SCI:Ali2022b, author = "M. Alirezaei and Q.C. Nguyen and R. Whitaker and T. Tasdizen", title = "Multi-Task Classification for Improved Health Outcome Prediction Based on Environmental Indicators", journal = "IEEE Access", year = "2022", url = "https://publications.utah.edu/publications/Ali2022b/ali2022b.pdf", } @Article{SCI:Ans2022a, author = "E.E. Anstadt and W. Tao and E. Guo and L. Dvoracek and M.K. Bruce and P.J. Grosse and L. Wang and L. Kavan and R. Whitaker and J.A. Goldstein", title = "Quantifying the Severity of Metopic Craniosynostosis Using Unsupervised Machine Learning", journal = "Plastic and Reconstructive Surgery", year = "2022", month = "November", url = "https://publications.utah.edu/publications/Ans2022a/Ans2022a.pdf", } @Article{SCI:Arz2022a, author = "A. Arzani and K.W. Cassel and R.M. D'Souza", title = "Theory-guided physics-informed neural networks for boundary layer problems with singular perturbation", journal = "Journal of Computational Physics", year = "2022", url = "https://publications.utah.edu/publications/Arz2022a/1-s2.0-S0021999122008312-main.pdf", } @Article{SCI:Ath2022a, author = "T. M. Athawale and D. Maljovec. L. Yan and C. R. Johnson and V. Pascucci and B. Wang", title = "Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "28", number = "4", pages = "1955-1966", year = "2022", month = "April", issn = "1077-2626", url = "https://publications.utah.edu/publications/Ath2022a/Uncertainty_Visualization_of_2D_Morse_Complex_Ensembles_Using_Statistical_Summary_Maps.pdf", } @Misc{SCI:Bak2022a, author = "J. Baker and E. Cherkaev and A. Narayan and B. Wang", title = "Learning POD of Complex Dynamics Using Heavy-ball Neural ODEs", subtitle = "arXiv:2202.12373", year = "2022", url = "https://publications.utah.edu/publications/Bak2022a/2202.12373.pdf", } @Misc{SCI:Bak2022b, author = "J. Baker and H. Xia and Y. Wang and E. Cherkaev and A. Narayan and L. Chen and J. Xin and A. L. Bertozzi and S. J. Osher and B. Wang", title = "Proximal Implicit ODE Solvers for Accelerating Learning Neural ODEs", subtitle = "arXiv preprint arXiv:2204.08621", year = "2022", url = "https://publications.utah.edu/publications/Bak2022b/2204.08621.pdf", } @Misc{SCI:Ban2022a, author = "W. Bangerth and C. R. Johnson and D. K. Njeru and B. van Bloemen Waanders", title = "Estimating and using information in inverse problems", subtitle = "arXiv:2208.09095", year = "2022", url = "https://publications.utah.edu/publications/Ban2022a/2208.09095.pdf", } @Article{SCI:Ber2022a, author = "J. A. Bergquist and J. Coll-Font and B. Zenger and L. C. Rupp and W. W. Good and D. H. Brooks and R. S. MacLeod", title = "Reconstruction of cardiac position using body surface potentials", journal = "Computers in Biology and Medicine", volume = "142", pages = "105174", year = "2022", url = "https://publications.utah.edu/publications/Ber2022a/1-s2.0-S0010482521009689-main.pdf", } @Article{SCI:Ber2022b, author = "M. Berzins", title = "Energy conservation and accuracy of some MPM formulations", journal = "Computational Particle Mechanics", year = "2022", url = "https://publications.utah.edu/publications/Ber2022b/energy-conservation.pdf", } @Article{SCI:Ber2022c, author = "M. Berzins", title = "Computational Error Estimation for The Material Point Method", journal = "Computational Particle Mechanics", year = "2022", publisher = "Springer", url = "https://publications.utah.edu/publications/Ber2022c/document.pdf", } @InProceedings{SCI:Ber2022d, author = "J.A. Bergquist and L.C. Rupp and A. Busatto and B. Orkild and B. Zenger and W. Good and J. Coll-Font and A. Narayan and J. Tate and D. Brooks and R.S. MacLeod", title = "Heart Position Uncertainty Quantification in the Inverse Problem of ECGI", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Ber2022d/CinC2022-374.pdf", } @Article{SCI:Blu2022a, author = "J.D. Blum and J. Beiriger and C. Kalmar and R.A. Avery and S. Lang and D.F. Villavisanis and L. Cheung and D.Y. Cho and W. Tao and R. Whitaker and S.P. Bartlett and J.A. Taylor and J.A. Goldstein and J.W. Swanson", title = "Relating Metopic Craniosynostosis Severity to Intracranial Pressure", title_url = "https://journals.lww.com/jcraniofacialsurgery/Abstract/9900/Relating_Metopic_Craniosynostosis_Severity_to.72.aspx", journal = "The Journal of Craniofacial Surgery", year = "2022", } @TechReport{SCI:Bre2022a, author = "PT. Bremer and G. Tourassi and W. Bethel and K. Gaither and V. Pascucci and W. Xu", title = "Report for the ASCR Workshop on Visualization for Scientific Discovery, Decision-Making, and Communication", year = "2022", institution = "DOE", url = "https://publications.utah.edu/publications/Bre2022a/ASCRworkshop.pdf", } @Article{SCI:Bru2022a, author = "M. K. Bruce and W. Tao and J. Beiriger and C. Christensen and M. J. Pfaff and R. Whitaker and J. A. Goldstein", title = "3D Photography to Quantify the Severity of Metopic Craniosynostosis", journal = "The Cleft Palate-Craniofacial Journal", year = "2022", publisher = "SAGE Publications", url = "https://publications.utah.edu/publications/Bru2022a/10556656221087071.pdf", } @InProceedings{SCI:Bus2022a, author = "A. Busatto and J.A. Bergquist and L.C. Rupp and B. Zenger and R.S. MacLeod", title = "Unexpected Errors in the Electrocardiographic Forward Problem", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Bus2022a/CinC2022-217.pdf", } @Misc{SCI:Che2022a, author = " N. Cheng and O.A. Malik and Y. Xu and S. Becker and A. Doostan and A. Narayan", title = "Quadrature Sampling of Parametric Models with Bi-fidelity Boosting", subtitle = "arXiv:2209.05705v1", year = "2022", url = "https://publications.utah.edu/publications/Che2022a/2209.05705.pdf", } @Article{SCI:Csa2022a, author = "H. Csala and S.T.M. Dawson and A. Arzani", title = "Comparing different nonlinear dimensionality reduction techniques for data-driven unsteady fluid flow modeling", journal = "Physics of Fluids", year = "2022", publisher = "AIP Publishing", url = "https://publications.utah.edu/publications/Csa2022a/5.0127284.pdf", } @Misc{SCI:Dai2022a, author = "H. Dai and M. Bauer and P.T. Fletcher and S.C. Joshi", title = "Deep Learning the Shape of the Brain Connectome", subtitle = "arXiv preprint arXiv:2203.06122, 2022", year = "2022", url = "https://publications.utah.edu/publications/Dai2022a/2203.06122.pdf", } @InProceedings{SCI:Dor2022a, author = "M. Dorier and Z. Wang and U. Ayachit and S. Snyder and R. Ross and M. Parashar", title = "Colza: Enabling Elastic In Situ Visualization for High-performance Computing Simulations", booktitle = "2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS)", pages = "538-548", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Dor2022a/Colza.pdf", } @InProceedings{SCI:Fan2022a, author = "S. Fang and A. Narayan and R.M. Kirby and S. Zhe", title = "Bayesian Continuous-Time Tucker Decomposition", booktitle = "Proceedings of the 39 th International Conference on Machine Learning", year = "2022", url = "https://publications.utah.edu/publications/Fan2022a/ICML2022_BCTT.pdf", } @InProceedings{SCI:Fau2022a, author = "R. Faust and C. Scheidegger and K. Isaacs and W.Z. Bernstein and M. Sharp and C. North", title = "Interactive Visualization for Data Science Scripts", booktitle = "2022 IEEE Visualization in Data Science (VDS)", pages = "37-45", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Fau2022a/Interactive_Visualization_for_Data_Science_Scripts.pdf", } @InProceedings{SCI:Fer2022a, author = "A. Ferrero and B. Knudsen and D. Sirohi and R. Whitaker", title = "A Pathologist-Informed Workflow for Classification of Prostate Glands in Histopathology", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-16961-8_6", booktitle = "Medical Optical Imaging and Virtual Microscopy Image Analysis", pages = "53--62", year = "2022", publisher = "Springer Nature Switzerland", } @Article{SCI:Gra2022a, author = "M. Grant and M. R. Kunz and K. Iyer and L. I. Held and T. Tasdizen and J. A. Aguiar and P. P. Dholabhai", title = "Integrating atomistic simulations and machine learning to design multi-principal element alloys with superior elastic modulus", journal = "Journal of Materials Research", pages = "1--16", year = "2022", publisher = "Springer International Publishing", url = "https://publications.utah.edu/publications/Gra2022a/Grant2022_Article_IntegratingAtomisticSimulation.pdf", } @Article{SCI:Gu2022a, author = "J. Gu and P. Davis and G. Eisenhauer and W. Godoy and A. Huebl and S. Klasky and M. Parashar and N. Podhorszki and F. Poeschel and J. Vay and L. Wan and R. Wang and K. Wu", title = "Organizing Large Data Sets for Efficient Analyses on HPC Systems", journal = "Journal of Physics: Conference Series", volume = "2224", number = "1", pages = "012042", year = "2022", publisher = "IOP Publishing", url = "https://publications.utah.edu/publications/Gu2022a/Gu_2022_J._Phys. _Conf._Ser._2224_012042.pdf", } @Article{SCI:Han2022a, author = "M. Han and S. Sane and C. R. Johnson", title = "Exploratory Lagrangian-Based Particle Tracing Using Deep Learning", journal = "Journal of Flow Visualization and Image Processing", year = "2022", publisher = "Begell", url = "https://publications.utah.edu/publications/Han2022a/2110.08338.pdf", } @InProceedings{SCI:Han2022b, author = "M. Han and T.M. Athawale and D. Pugmire and C.R. Johnson", title = "Accelerated Probabilistic Marching Cubes by Deep Learning for Time-Varying Scalar Ensembles", booktitle = "2022 IEEE Visualization and Visual Analytics (VIS)", pages = "155-159", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Han2022b/DeepLearnCrossProbability-VIS2022.pdf", } @Misc{SCI:Hog2022a, author = "J.D. Hogue and R.M. Kirby and A. Narayan", title = "Dimensionality Reduction in Deep Learning via Kronecker Multi-layer Architectures", subtitle = "arXiv:2204.04273", year = "2022", url = "https://publications.utah.edu/publications/Hog2022a/2204.04273.pdf", } @PhdThesis{SCI:Hol2022a, author = "John Holmen", title = "Portable, Scalable Approaches For Improving Asynchronous Many-Task Runtime Node Use", year = "2022", school = "School of Computing, University of Utah", url = "https://publications.utah.edu/publications/Hol2022a/2022-04-12-final.pdf", } @InProceedings{SCI:Hol2022b, author = "J.K. Holmen and D. Sahasrabudhe and M. Berzins", title = "Porting Uintah to Heterogeneous Systems", title_url = "https://youtu.be/PIRe2VfXhqg", booktitle = "Proceedings of the Platform for Advanced Scientific Computing Conference (PASC22) Best Paper Award", year = "2022", publisher = "ACM", url = "https://publications.utah.edu/publications/Hol2022b/pasc22.pdf", } @Article{SCI:Ish2022a, author = "Y. Ishidoya and E. Kwan and D. J. Dosdall and R. S. Macleod and L. Navaravong and B. A. Steinberg and T. J. Bunch and R. Ranjan", title = "Short-Term Natural Course of Esophageal Thermal Injury After Ablation for Atrial Fibrillation", title_url = "https://pubmed.ncbi.nlm.nih.gov/35606341/", journal = "Journal of Cardiovascular Electrophysiology", year = "2022", publisher = "Wiley", } @Article{SCI:Ish2022b, author = "Y. Ishidoya and E. Kwan and D. J. Dosdall and R. S. Macleod and L. Navaravong and B. A. Steinberg and T. J. Bunch and R. Ranjan", title = "Shorter Distance Between The Esophagus And The Left Atrium Is Associated With Higher Rates Of Esophageal Thermal Injury After Radiofrequency Ablation", title_url = "https://onlinelibrary.wiley.com/doi/abs/10.1111/jce.15554", journal = "Journal of Cardiovascular Electrophysiology", year = "2022", publisher = "Wiley", } @Misc{SCI:Iye2022a, author = "K. Iyer and A. Morris and B. Zenger and K. Karnath and B.A. Orkild and O. Korshak and S. Elhabian", title = "Statistical Shape Modeling of Biventricular Anatomy with Shared Boundaries", subtitle = "arXiv:2209.02706v1", year = "2022", url = "https://publications.utah.edu/publications/Iye2022a/2209.02706.pdf", } @Article{SCI:Jen2022a, author = "M.H. Jensen and S. Joshi and S. Sommer", title = "Discrete-Time Observations of Brownian Motion on Lie Groups and Homogeneous Spaces: Sampling and Metric Estimation", journal = "Algorithms", volume = "15", number = "8", year = "2022", issn = "1999-4893", url = "https://publications.utah.edu/publications/Jen2022a/algorithms-15-00290.pdf", } @InProceedings{SCI:Jia2022a, author = "X. Jiang and Z. Li and R. Missel and Md. Zaman and B. Zenger and W. W. Good and R. S. MacLeod and J. L. Sapp and L. Wang", title = "Few-Shot Generation of Personalized Neural Surrogates for Cardiac Simulation via Bayesian Meta-learning", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-16452-1_5", booktitle = "Medical Image Computing and Computer Assisted Intervention -- MICCAI 2022", pages = "46--56", year = "2022", publisher = "Springer Nature Switzerland", isbn = "978-3-031-16452-1", } @Article{SCI:Jia2022b, author = "X. Jiang and M. Toloubidokhti and J. Bergquist and B. Zenger and w. Good and R.S. MacLeod and L. Wang", title = "Improving Generalization by Learning Geometry-Dependent and Physics-Based Reconstruction of Image Sequences", journal = "IEEE Transactions on Medical Imaging", year = "2022", url = "https://publications.utah.edu/publications/Jia2022b/Jia2022b.pdf", } @InProceedings{SCI:Jia2022c, author = "X. Jiang and J. Tate and J. Bergquist and A. Narayan and R. MacLeod and L. Wang", title = "Uncertainty Quantification of Cardiac Position on Deep Graph Network ECGI", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Jia2022c/CinC2022-425.pdf", } @Article{SCI:Kam2022a, author = "R. Kamali and K. Gillete and J. Tate and D. A. Abhyankar and D. J. Dosdall and G. Plank and T. J. Bunch and R. S. Macleod & R. Ranjan ", title = "Treatment Planning for Atrial Fibrillation Using Patient-Specific Models Showing the Importance of Fibrillatory-Areas", journal = "Annals of Biomedical Engineering", year = "2022", publisher = "Springer", url = "https://publications.utah.edu/publications/Kam2022a/Kamali2022_Article_TreatmentPlanningForAtrialFibr.pdf", } @Misc{SCI:Kes2022a, author = "V. Keshavarzzadeh and R.M. Kirby and A. Narayan", title = "Variational Inference for Nonlinear Inverse Problems via Neural Net Kernels: Comparison to Bayesian Neural Networks, Application to Topology Optimization", subtitle = "arXiv:2205.03681", year = "2022", url = "https://publications.utah.edu/publications/Kes2022a/2205.03681.pdf", } @Article{SCI:Klo2022a, author = "D. Klotzl and T. Krake and Y. Zhou and I. Hotz and B. Wang and D. Weiskopf", title = "Local Bilinear Computation of Jacobi Sets", journal = "The Visual Computer", year = "2022", url = "https://publications.utah.edu/publications/Klo2022a/s00371-022-02557-4.pdf", } @Misc{SCI:Klo2022b, author = "D. Klötzl and T. Krake and Y. Zhou and J. Stober and K. Schulte and I. Hotz and B. Wang and D. Weiskopf", title = "Reduced Connectivity for Local Bilinear Jacobi Sets", subtitle = "arXiv:2208.07148", year = "2022", url = "https://publications.utah.edu/publications/Klo2022b/2208.07148.pdf", } @Misc{SCI:Lan2022a, author = "R. Lanfredi and J.D. Schroeder and T. Tasdizen", title = "Localization supervision of chest x-ray classifiers using label-specific eye-tracking annotation", subtitle = "arXiv:2207.09771", year = "2022", url = "https://publications.utah.edu/publications/Lan2022a/2207.09771.pdf", } @Misc{SCI:Lan2022b, author = "D. Lange and S. Sahai and J.M. Phillips and A. Lex", title = "Ferret: Reviewing Tabular Datasets for Manipulation", subtitle = "OSF Preprint", year = "2022", url = "https://publications.utah.edu/publications/Lan2022b/paper_2022_Ferret_preprint.pdf", } @Misc{SCI:Li2022a, author = "Z. Li and S. Liu and X. Yu and K. Bhavya and J. Cao and J. Diffenderfer and P.T. Bremer and V. Pascucci", title = "“Understanding Robustness Lottery”: A Comparative Visual Analysis of Neural Network Pruning Approaches", subtitle = "arXiv preprint arXiv:2206.07918", year = "2022", url = "https://publications.utah.edu/publications/Li2022a/2206.07918.pdf", } @InProceedings{SCI:Li2022b, author = "S. Li and R.M. Kirby and S. Zhe", title = "Decomposing Temporal High-Order Interactions via Latent ODEs", booktitle = "Proceedings of the 39 th International Conference on Machine Learning", year = "2022", url = "https://publications.utah.edu/publications/Li2022b/THIS-ODE.pdf", } @Misc{SCI:Li2022c, author = "S. Li and Z Wang and R.M. Kirby and S. Zhe", title = "Infinite-Fidelity Coregionalization for Physical Simulation", subtitle = "arXiv:2207.00678", year = "2022", url = "https://publications.utah.edu/publications/Li2022c/2207.00678.pdf", } @Misc{SCI:Li2022d, author = "Z. Li and T. Sun and H. Wang and B. Wang", title = "Adaptive and Implicit Regularization for Matrix Completion", subtitle = "arXiv preprint arXiv:2208.05640", year = "2022", url = "https://publications.utah.edu/publications/Li2022d/2208.05640.pdf", } @Misc{SCI:Li2022e, author = "S. Li and J.M. Phillips and X. Yu and R.M. Kirby and S. Zhe", title = "Batch Multi-Fidelity Active Learning with Budget Constraints", subtitle = "arXiv:2210.12704v1", year = "2022", url = "https://publications.utah.edu/publications/Li2022e/2210.12704.pdf", } @Misc{SCI:Li2022f, author = "S. Li and M. Penwarden and R.M. Kirby and S. Zhe", title = "Meta Learning of Interface Conditions for Multi-Domain Physics-Informed Neural Networks", subtitle = "arXiv preprint arXiv:2210.12669", year = "2022", url = "https://publications.utah.edu/publications/Li2022f/2210.12669.pdf", } @Article{SCI:Li2022g, author = "Z. Li and H. Menon and K. Mohror and S. Liu and L. Guo and P.T. Bremer and V. Pascucci", title = "A Visual Comparison of Silent Error Propagation", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Li2022g/A_Visual_Comparison_of_Silent_Error_Propagation.pdf", } @Misc{SCI:Liu2022a, author = "Z. Liu and A. Narayan", title = "A Stieltjes algorithm for generating multivariate orthogonal polynomials", subtitle = "arXiv preprint arXiv:2202.04843", year = "2022", url = "https://publications.utah.edu/publications/Liu2022a/2202.04843.pdf", } @Misc{SCI:Liv2022a, author = "Y. Livnat and D. Maljovec and A. Gyulassy and B. Mouginot and V. Pascucci", title = "A Novel Tree Visualization to Guide Interactive Exploration of Multi-dimensional Topological Hierarchies", subtitle = "arXiv preprint arXiv:2208.06952", year = "2022", url = "https://publications.utah.edu/publications/Liv2022a/2208.06952.pdf", } @Misc{SCI:Lue2022a, author = "J. Luettgau and C.R. Kirkpatrick and G. Scorzelli and V. Pascucci and G. Tarcea and M. Taufer", title = "NSDF-Catalog: Lightweight Indexing Service for Democratizing Data Delivering", year = "2022", url = "https://publications.utah.edu/publications/Lue2022a/catalog.pdf", } @Misc{SCI:Mal2022a, author = "O.A. Malik and Y. Xu and N. Cheng and S. Becker and A. Doostan and A. Narayan", title = "Fast Algorithms for Monotone Lower Subsets of Kronecker Least Squares Problems", subtitle = "arXiv:2209.05662v1", year = "2022", url = "https://publications.utah.edu/publications/Mal2022a/2209.05662.pdf", } @Misc{SCI:Mor2022a, author = "N. Morrical and A. Sahistan and U. Güdükbay and I. Wald and V. Pascucci", title = "Quick Clusters: A GPU-Parallel Partitioning for Efficient Path Tracing of Unstructured Volumetric Grids", year = "2022", url = "https://publications.utah.edu/publications/Mor2022a/Quick_Clusters.pdf", } @Article{SCI:Nar2022a, author = "A. Narayan and Z. Liu and J. A. Bergquist and C. Charlebois and S. Rampersad and L. Rupp and D. Brooks and D. White and J. Tate and R. S. MacLeod", title = "UncertainSCI: Uncertainty quantification for computational models in biomedicine and bioengineering", journal = "Computers in Biology and Medicine", year = "2022", url = "https://publications.utah.edu/publications/Nar2022a/1-s2.0-S0010482522011155-main.pdf", } @Article{SCI:Ngu2022a, author = "Q. C. Nguyen and T. Belnap and P. Dwivedi and A. Hossein Nazem Deligani and A. Kumar and D. Li and R. Whitaker and J. Keralis and H. Mane and X. Yue and T. T. Nguyen and T. Tasdizen and K. D. Brunisholz", title = "Google Street View Images as Predictors of Patient Health Outcomes, 2017–2019", journal = "Big Data and Cognitive Computing", volume = "6", number = "1", year = "2022", publisher = "Multidisciplinary Digital Publishing Institute", url = "https://publications.utah.edu/publications/Ngu2022a/BDCC-06-00015.pdf", } @Misc{SCI:Ngu2022b, author = "T. Nguyen and R.G. Baraniuk and R.M. Kirby and S.J. Osher and B. Wang", title = "Momentum Transformer: Closing the Performance Gap Between Self-attention and Its Linearization", subtitle = "arXiv preprint arXiv:2208.00579", year = "2022", url = "https://publications.utah.edu/publications/Ngu2022b/2208.00579.pdf", } @Article{SCI:Niz2022a, author = "C. A. Nizinski and C. Ly and C. Vachet and A. Hagen and T. Tasdizen and L. W. McDonald", title = "Characterization of uncertainties and model generalizability for convolutional neural network predictions of uranium ore concentrate morphology", journal = "Chemometrics and Intelligent Laboratory Systems", volume = "225", pages = "104556", year = "2022", publisher = "Elsevier", issn = "0169-7439", url = "https://publications.utah.edu/publications/Niz2022a/1-s2.0-S0169743922000673-main.pdf", } @Article{SCI:Nje2022a, author = "D. K. Njeru and T. M. Athawale and J. J. France and C. R. Johnson", title = "Quantifying and Visualizing Uncertainty for Source Localisation in Electrocardiographic Imaging", title_url = "https://www.tandfonline.com/share/G28ZM6FHBCZVFE58JQYU?target=10.1080/21681163.2022.2113824", journal = "Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization", pages = "1--11", year = "2022", publisher = "Taylor & Francis", } @InProceedings{SCI:Ola2022a, author = "P. Olaya and J. Luettgau and N. Zhou and J. Lofstead and G. Scorzelli and V. Pascucci and M. Taufer", title = "NSDF-FUSE: A Testbed for Studying Object Storage via FUSE File Systems", booktitle = "Proceedings of the 31st International Symposium on High-Performance Parallel and Distributed Computing", pages = "277–278", year = "2022", publisher = "Association for Computing Machinery", isbn = "9781450391993", url = "https://publications.utah.edu/publications/Ola2022a/3502181.3533709.pdf", } @InProceedings{SCI:Ork2022a, author = "B.A. Orkild and J.A. Bergquist and L.C. Rupp and A. Busatto and B. Zenger and W.W. Good and J. Coll-Font and R.S. MacLeod", title = "A Sliding Window Approach to Regularization in Electrocardiographic Imaging", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Ork2022a/CinC2022-403.pdf", } @Article{SCI:Oue2022a, author = "T.A.J. Ouermi and R.M. Kirby and M. Berzins", title = "ENO-Based High-Order Data-Bounded and Constrained Positivity-Preserving Interpolation", subtitle = "https://arxiv.org/abs/2204.06168", journal = "Numerical Algorithms", year = "2022", url = "https://publications.utah.edu/publications/Oue2022a/Tajo-PPI-paper2021.pdf", } @PhdThesis{SCI:Oue2022b, author = "Timbwaoga Aime Judicael (TAJO) Ouermi", title = "Accelerating Physics Schemes in Numerical Weather Prediction Codes and Preserving Positivity in the Physics-Dynamics coupling", year = "2022", school = "University of Utah", url = "https://publications.utah.edu/publications/Oue2022b/tajo-dissertation-80-2022.pdf", } @InProceedings{SCI:Pac2022a, author = "E. Paccione and B. Hunt and E. Kwan and D. Dosdall and R. MacLeod and R. Ranjan", title = "Unipolar R:S Development in Chronic Atrial Fibrillation", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Pac2022a/CinC2022-375.pdf", } @Article{SCI:Par2022a, author = "M. Parashar", title = "Advancing Reproducibility in Parallel and Distributed Systems Research", journal = "Computer", volume = "55", number = "5", pages = "4--5", year = "2022", url = "https://publications.utah.edu/publications/Par2022a/Advancing_Reproducibility_in_Parallel_and_Distributed_Systems_Research.pdf", } @Article{SCI:Par2022b, author = "M. Parashar and A. Friedlander and E. Gianchandani and and M. Martonosi", title = "Transforming science through cyberinfrastructure", journal = "Communications of the ACM", volume = "65", number = "8", pages = "30–32", year = "2022", url = "https://publications.utah.edu/publications/Par2022b/3507694.pdf", } @Article{SCI:Par2022c, author = "M. Parashar and M.A. Heroux and V. Stodde", title = "Research Reproducibility", journal = "Computer", volume = "55", number = "8", pages = "16--18", year = "2022", publisher = "IEEE", month = "August", url = "https://publications.utah.edu/publications/Par2022c/Research_Reproducibility.pdf", } @Article{SCI:Par2022d, author = "M. Parashar", title = "Democratizing Science Through Advanced Cyberinfrastructure", journal = "Computer", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Par2022d/09869577.pdf", } @Article{SCI:Pet2022a, author = "A.C. Peterson and R.J. Lisonbee and N. Krähenbühl and C.L. Saltzman and A. Barg and N. Khan and S. Elhabian and A.L. Lenz", title = "Multi-level multi-domain statistical shape model of the subtalar, talonavicular, and calcaneocuboid joints", journal = "Frontiers in Bioengineering and Biotechnology", year = "2022", url = "https://publications.utah.edu/publications/Pet2022a/fbioe-10-1056536.pdf", } @Article{SCI:Qui2022a, author = "A. Quistberg and C.I. Gonzalez and P. Arbeláez and O.L. Sarmiento and L. Baldovino-Chiquillo and Q. Nguyen and T. Tasdizen and L.A.G. Garcia and D. Hidalgo and S.J. Mooney and A.V.D. Roux and G. Lovasi", title = "430 Training neural networks to identify built environment features for pedestrian safety", title_url = "https://injuryprevention.bmj.com/content/28/Suppl_2/A65.2", journal = "Injury Prevention", volume = "28", number = "2", pages = "A65", year = "2022", publisher = "BMJ", } @TechReport{SCI:Ree2022a, author = "D. Reed and D. Gannon and J. Dongarra", title = "Reinventing High Performance Computing: Challenges and Opportunities", subtitle = "UUSCI-2022-001", year = "2022", institution = "University of Utah", url = "https://publications.utah.edu/publications/Ree2022a/2203.02544.pdf", } @Article{SCI:Rei2022a, author = "J.R. Reimer and F.R. Adler and K.M. Golden and A. Narayan", title = "Uncertainty quantification for ecological models with random parameters", journal = "Ecology Letters", pages = "1--13", year = "2022", publisher = "Wiley", url = "https://publications.utah.edu/publications/Rei2022a/rei2022a.pdf", } @InProceedings{SCI:Rup2022a, author = "L.C. Rupp and B. Zenger and J.A. Bergquist and A. Busatto and R.S. MacLeod", title = "The Role of Beta-1 Receptors in the Response to Myocardial Ischemia", booktitle = "Computing in Cardiology", volume = "49", year = "2022", url = "https://publications.utah.edu/publications/Rup2022a/CinC2022-216.pdf", } @InProceedings{SCI:Sah2022a, author = "S. Saha and O and Choi and R. Whitaker", title = "Few-Shot Segmentation of Microscopy Images Using Gaussian Process", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-16961-8_10", booktitle = "Medical Optical Imaging and Virtual Microscopy Image Analysis", pages = "94--104", year = "2022", publisher = "Springer Nature Switzerland", } @Article{SCI:San2022a, author = "S. Sane and C. R. Johnson and H. Childs", title = "Demonstrating the viability of Lagrangian in situ reduction on supercomputers", journal = "Journal of Computational Science", volume = "61", year = "2022", publisher = "Elsevier", url = "https://publications.utah.edu/publications/San2022a/1-s2.0-S1877750322000400-main.pdf", } @Misc{SCI:Sub2022a, author = "S. Subramanian and R.M. Kirby and M.W. Mahoney and A. Gholami", title = "Adaptive Self-supervision Algorithms for Physics-informed Neural Networks ", subtitle = "arXiv:2207.04084", year = "2022", url = "https://publications.utah.edu/publications/Sub2022a/2207.04084.pdf", } @InProceedings{SCI:Sun2022a, author = "T. Sun and D. Li and B. Wang", title = "Adaptive Random Walk Gradient Descent for Decentralized Optimization", booktitle = "Proceedings of the 39th International Conference on Machine Learning", year = "2022", url = "https://publications.utah.edu/publications/Sun2022a/ada_random_walk.pdf", } @InProceedings{SCI:Sun2022b, author = "T. Sun and D. Li and B. Wang", title = "Finite-Time Analysis of Adaptive Temporal Difference Learning with Deep Neural Networks", booktitle = "36th Conference on Neural Information Processing Systems (NeurIPS 2022)", year = "2022", month = "October", url = "https://publications.utah.edu/publications/Sun2022b/sun-neurIPS2022.pdf", } @InProceedings{SCI:Tar2022a, author = "G. Tarcea and B. Puchala and T. Berman and G. Scorzelli and V. Pascucci and M and Taufer and J. Allison", title = "The Materials Commons Data Repository", booktitle = "2022 IEEE 18th International Conference on e-Science (e-Science)", pages = "405--406", year = "2022", url = "https://publications.utah.edu/publications/Tar2022a/The_Materials_Commons_Data_Repository.pdf", } @InProceedings{SCI:Tol2022a, author = "M. Toloubidokhti and N. Kumar and Z. Li and P. K. Gyawali and B. Zenger and W. W. Good and R. S. MacLeod and L. Wang ", title = "Interpretable Modeling and Reduction of Unknown Errors in Mechanistic Operators", title_url = "https://link.springer.com/chapter/10.1007/978-3-031-16452-1_44", booktitle = "Medical Image Computing and Computer Assisted Intervention -- MICCAI 2022", pages = "459--468", year = "2022", publisher = "Springer Nature Switzerland", isbn = "978-3-031-16452-1", } @Article{SCI:Ton2022a, author = "D. Tong and N. Soley and R. Kolasangiani and M.A. Schwartz and T.C. Bidone", title = "αIIbβ3 integrin intermediates: from molecular dynamics to adhesion assembly", journal = "Biophysical Journal", year = "2022", url = "https://publications.utah.edu/publications/Ton2022a/1-s2.0-S000634952203942X-main.pdf", } @InProceedings{SCI:Tra2022a, author = "H. D. Tran and M. Fernando and K. Saurabh and B. Ganapathysubramanian and R. M. Kirby and H. Sundar", title = "A scalable adaptive-matrix SPMV for heterogeneous architectures", booktitle = "2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS)", pages = "13--24", year = "2022", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tra2022a/SPMV.pdf", } @InProceedings{SCI:Ush2022a, author = "W. Usher and J. Amstutz and J. Günther and A. Knoll and G. P. Johnson and C. Brownlee and A. Hota and B. Cherniak and T. Rowley and J. Jeffers and V. Pascucci ", title = "Scalable CPU Ray Tracing for In Situ Visualization Using OSPRay", title_url = "https://link.springer.com/chapter/10.1007/978-3-030-81627-8_16", booktitle = "In Situ Visualization for Computational Science", pages = "353--374", year = "2022", publisher = "Springer International Publishing", isbn = "978-3-030-81627-8", } @InProceedings{SCI:Ven2022a, author = "A. Venkat and D. Hoang and A. Gyulassy and P.T. Bremer and F. Federer and V. Pascucci", title = "High-Quality Progressive Alignment of Large 3D Microscopy Data", booktitle = "2022 IEEE 12th Symposium on Large Data Analysis and Visualization (LDAV)", pages = "1--10", year = "2022", url = "https://publications.utah.edu/publications/Ven2022a/ven2022a.pdf", } @InProceedings{SCI:Wan2022a, author = "Z. Wang and Y. Xu and C. Tillinghast and S. Li and A. Narayan and S. Zhe", title = "Nonparametric Embeddings of Sparse High-Order Interaction Events", booktitle = "Proceedings of the 39 th International Conference on Machine Learning", pages = "23237-23253", year = "2022", publisher = "PLMR", url = "https://publications.utah.edu/publications/Wan2022a/wang22ah.pdf", } @Article{SCI:Wan2022b, author = "Z. Wang and M. Dorier and P. Subedi and P.E. Davis and M. Parashar", title = "Adaptive elasticity policies for staging-based in situ visualization", journal = "Future Generation Computer Systems", year = "2022", issn = "0167-739X", url = "https://publications.utah.edu/publications/Wan2022b/1-s2.0-S0167739X22004150-main.pdf", } @Misc{SCI:Zal2022a, author = "V. Zala and A. Narayan and R.M. Kirby", title = "Convex Optimization-Based Structure-Preserving Filter For Multidimensional Finite Element Simulations", subtitle = "arXiv preprint arXiv:2203.09748", year = "2022", url = "https://publications.utah.edu/publications/Zal2022a/2203.09748.pdf", } @InProceedings{SCI:Zha2022a, author = "B. Zhang and P. Subedi and P. E. Davis and F. Rizzi and K. Teranishi and M. Parashar", title = "Assembling Portable In-Situ Workflow from Heterogeneous Components using Data Reorganization", booktitle = "22nd IEEE International Symposium on Cluster, Cloud and Internet Computing (CCGrid)", pages = "41-50", year = "2022", url = "https://publications.utah.edu/publications/Zha2022a/zhang2022a.pdf", } @Article{SCI:Zho2022a, author = "L. Zhou and M. Fan and C. Hansen and C. R. Johnson and D. Weiskopf", title = "A Review of Three-Dimensional Medical Image Visualization", journal = "Health Data Science", volume = "2022", year = "2022", url = "https://publications.utah.edu/publications/Zho2022a/9840519.pdf", } @Misc{SCI:Agr2021a, author = "P. Agrawal and R. T. Whitaker and S. Y. Elhabian", title = "Learning Deep Features for Shape Correspondence with Domain Invariance", subtitle = "arXiv preprint arXiv:2102.10493", year = "2021", url = "https://publications.utah.edu/publications/Agr2021a/2102.10493.pdf", } @InProceedings{SCI:Ath2021a, author = "T. M. Athawale and B. J. Stanislawski and S. Sane and and C. R. Johnson", title = "Visualizing Interactions Between Solar Photovoltaic Farms and the Atmospheric Boundary Layer", booktitle = "Twelfth ACM International Conference on Future Energy Systems", pages = "377--381", year = "2021", url = "https://publications.utah.edu/publications/Ath2021a/3447555.3466599.pdf", } @Misc{SCI:Ath2021b, author = "T. M. Athawale and S. Sane and C. R. Johnson", title = "Uncertainty Visualization of the Marching Squares and Marching Cubes Topology Cases", subtitle = "arXiv:2108.03066", year = "2021", url = "https://publications.utah.edu/publications/Ath2021b/2108.03066.pdf", } @Article{SCI:Ath2021c, author = "T. M. Athawale and B. Ma and E. Sakhaee and C. R. Johnson and and A. Entezari", title = "Direct Volume Rendering with Nonparametric Models of Uncertainty", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "27", number = "2", pages = "1797-1807", year = "2021", url = "https://publications.utah.edu/publications/Ath2021c/dvrUncertainty_Tushar_Athawale.pdf", } @Article{SCI:Atk2021a, author = "P. R. Atkins and P. Agrawal and J. D. Mozingo and K. Uemura and K. Tokunaga and C. L. Peters and S. Y. Elhabian and R. T. Whitaker and A. E. Anderson", title = "Prediction of Femoral Head Coverage from Articulated Statistical Shape Models of Patients with Developmental Dysplasia of the Hip", journal = "Journal of Orthopaedic Research", year = "2021", publisher = "Wiley", url = "https://publications.utah.edu/publications/Atk2021a/jor.25227.pdf", } @InProceedings{SCI:Bag2021a, author = "A. Bagherinezhad and M. Young and Bei Wang and M. Parvania", title = "Spatio-Temporal Visualization of Interdependent Battery Bus Transit and Power Distribution Systems", booktitle = "IEEE PES Innovative Smart Grid Technologies Conference(ISGT)", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Bag2021a/PowerTransVis_BeiWang_2021.pdf", } @Misc{SCI:Bal2021a, author = "M. K. Ballard and R. Amici and V. Shankar and L. A. Ferguson and M. Braginsky and R. M. Kirby", title = "Towards an Extrinsic, CG-XFEM Approach Based on Hierarchical Enrichments for Modeling Progressive Fracture", subtitle = "arXiv preprint arXiv:2104.14704", year = "2021", url = "https://publications.utah.edu/publications/Bal2021a/2104.14704.pdf", } @InProceedings{SCI:Bal2021b, author = "D. Balouek-Thomert and I. Rodero and M. Parashar", title = "Evaluating policy-driven adaptation on the Edge-to-Cloud Continuum", booktitle = "IEEE/ACM HPC for Urgent Decision Making (UrgentHPC)", pages = "11-20", year = "2021", url = "https://publications.utah.edu/publications/Bal2021b/Evaluating_policy-driven_adaptation_on_the_Edge-to-Cloud_Continuum.pdf", } @InProceedings{SCI:Bal2021c, author = "D. Balouek-Thomert and P. Silva and K. Fauvel and A. Costan and G. Antoniu and M. Parashar", title = "MDSC: Modelling Distributed Stream Processing across the Edge-to-Cloud Continuum", booktitle = "DML-ICC 2021 workshop (held in conjunction with UCC 2021)", year = "2021", month = "December", url = "https://publications.utah.edu/publications/Bal2021c/DML_ICC_2021.pdf", } @InProceedings{SCI:Ber2021a, author = "M. Berzins", title = "Symplectic Time Integration Methods for the Material Point Method, Experiments, Analysis and Order Reduction", booktitle = "WCCM-ECCOMAS2020 virtual Conference", year = "2021", month = "January", note = "Minor typographical correction in March 2024", url = "https://publications.utah.edu/publications/Ber2021a/WCCM20_MBERZINS_Revised3_2024.pdf", } @Article{SCI:Ber2021b, author = "J. A. Bergquist and W. W. Good and B. Zenger and J. D. Tate and L. C. Rupp and R. S. MacLeod", title = "The Electrocardiographic Forward Problem: A Benchmark Study", journal = "Computers in Biology and Medicine", volume = "134", pages = "104476", year = "2021", publisher = "Pergamon", url = "https://publications.utah.edu/publications/Ber2021b/1-s2.0-S0010482521002705-main.pdf", } @InProceedings{SCI:Ber2021c, author = "M. Berzins", title = "Time Stepping with Space and Time Errors and Stability of the Material Point Method", booktitle = "Proceedings of VII International Conference on Particle-Based Methods, PARTICLES 2021", year = "2021", editor = "P. Wriggers, M. Bischoff, E. Onate, M. Bischoff, A. Duster & T. Zohdi", url = "https://publications.utah.edu/publications/Ber2021c/Berzins_particles2021.pdf", } @Article{SCI:Bha2021a, author = "R. Bhalodia and S. Elhabian and L. Kavan and R. Whitaker", title = "Leveraging Unsupervised Image Registration for Discovery of Landmark Shape Descriptor", journal = "Medical Image Analysis", pages = "102157", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Bha2021a/1-s2.0-S1361841521002036-main.pdf", } @Misc{SCI:Bha2021b, author = "R. Bhalodia and S. Elhabian and J. Adams and W. Tao and L. Kavan and R. Whitaker", title = "DeepSSM: A Blueprint for Image-to-Shape Deep Learning Models", subtitle = "arXiv preprint arXiv:2110.07152", year = "2021", url = "https://publications.utah.edu/publications/Bha2021b/2110.07152.pdf", } @Misc{SCI:Bha2021c, author = "H. Bhatia and S. N. Petruzza and R. Anirudh and A. G. Gyulassy and R. M. Kirby and V. Pascucci and P. T. Bremer", title = "Data-Driven Estimation of Temporal-Sampling Errors in Unsteady Flows", year = "2021", url = "https://publications.utah.edu/publications/Bha2021c/EasyChair-Preprint-6891.pdf", } @Misc{SCI:Bha2021d, author = "H. Bhatia and D. Hoang and N. Morrical and V. Pascucci and P.T. Bremer and P. Lindstrom", title = "AMM: Adaptive Multilinear Meshes", subtitle = "arXiv:2007.15219", year = "2021", url = "https://publications.utah.edu/publications/Bha2021d/2007.15219.pdf", } @Article{SCI:Bla2021a, author = "S. R. Black and A. Janson and M. Mahan and J. Anderson and C. R. Butson", title = "Identification of Deep Brain Stimulation Targets for Neuropathic Pain After Spinal Cord Injury Using Localized Increases in White Matter Fiber Cross‐Section", journal = "Neuromodulation: Technology at the Neural Interface", year = "2021", publisher = "John Wiley & Sons, Inc.", url = "https://publications.utah.edu/publications/Bla2021a/ner.13399.pdf", } @Misc{SCI:Cam2021a, author = "K. M. Campbell and H. Dai and Z. Su and M. Bauer and P. T. Fletcher and S. C. Joshi", title = "Structural Connectome Atlas Construction in the Space of Riemannian Metrics", subtitle = "arXiv", year = "2021", url = "https://publications.utah.edu/publications/Cam2021a/2103.05730.pdf", } @Article{SCI:Cam2021b, author = "S. H. Campbell and T. Bidone", title = "3D Model of Cell Migration and Proliferation in a Tissue Scaffold", title_url = "https://www.sciencedirect.com/science/article/pii/S0006349520326060?via%3Dihub", journal = "Biophysical Journal", volume = "120", number = "3", pages = "265a", year = "2021", publisher = "Elsevier", } @Misc{SCI:Cam2021c, author = "K.M. Campbell and H. Dai and Z. Su and M. Bauer and P.T. Fletcher and S.C. Joshi", title = "Integrated Construction of Multimodal Atlases with Structural Connectomes in the Space of Riemannian Metrics", subtitle = "arXiv preprint arXiv:2109.09808", year = "2021", url = "https://publications.utah.edu/publications/Cam2021c/2109.09808.pdf", } @Article{SCI:Car2021a, author = "M. Carlson and X. Zheng and H. Sundar and G. E. Karniadakis and R. M. Kirby", title = "An open-source parallel code for computing the spectral fractional Laplacian on 3D complex geometry domains", journal = "Computer Physics Communications", volume = "261", pages = "107695", year = "2021", publisher = "North-Holland", url = "https://publications.utah.edu/publications/Car2021a/1-s2.0-S0010465520303416-main.pdf", } @Misc{SCI:Car2021b, author = "K. R. Carney and A. M. Khan and S. C. Samson and N. Mittal and S. J. Han and M. C. Mendoza and T. C. Bidone", title = "Nascent adhesions differentially regulate lamellipodium velocity and persistence", subtitle = "bioRxiv", year = "2021", url = "https://publications.utah.edu/publications/Car2021b/2021.11.15.468602.full.pdf", } @Article{SCI:Che2021a, author = "Y. Chen and C. McNabb and T. Bidone", title = "Computational Model of E-cadherin Clustering under Cortical Tension", title_url = "https://www.cell.com/biophysj/pdf/S0006-3495(20)32467-X.pdf", journal = "Biophysical Journal", volume = "120", number = "3", pages = "236a", year = "2021", publisher = "Elsevier", } @Article{SCI:Che2021b, author = "Y. Chen and L. Ji and A. Narayan and Z. Xu", title = "L1-based reduced over collocation and hyper reduction for steady state and time-dependent nonlinear equations", journal = "Journal of Scientific Computing", volume = "87", number = "1", pages = "1--21", year = "2021", publisher = "Springer US", url = "https://publications.utah.edu/publications/Che2021b/Chen2021_Article_L1-BasedReducedOverCollocation.pdf", } @Article{SCI:Chi2021a, author = "J. Chilleri and Y. He and D. Bedrov and R. M. Kirby", title = "Optimal allocation of computational resources based on Gaussian process: Application to molecular dynamics simulations", journal = "Computational Materials Science", volume = "188", pages = "110178", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Chi2021a/1-s2.0-S0927025620306698-main.pdf", } @Article{SCI:Dai2021a, author = "D. Dai and Y. Epshteyn and A. Narayan", title = "Hyperbolicity-Preserving and Well-Balanced Stochastic Galerkin Method for Two-Dimensional Shallow Water Equations", journal = "SIAM Journal on Scientific Computing", volume = "43", number = "2", pages = "A929-A952", year = "2021", publisher = "Society for Industrial and Applied Mathematics", url = "https://publications.utah.edu/publications/Dai2021a/2104.11268.pdf", } @Misc{SCI:Dai2021b, author = "D. Dai and Y. Epshteyn and A. Narayan", title = "Non-Dissipative and Structure-Preserving Emulators via Spherical Optimization", subtitle = "arXiv:2108.12053", year = "2021", url = "https://publications.utah.edu/publications/Dai2021b/2108.12053.pdf", } @Misc{SCI:Dee2021a, author = "E. Deelman and A. Mandal and A. P. Murillo and J. Nabrzyski and V. Pascucci and R. Ricci and I. Baldin and S. Sons and L. Christopherson and C. Vardeman and R. F. da Silva and J. Wyngaard and S. Petruzza and M. Rynge and K. Vahi and W. R. Whitcup and J. Drake and E. Scott", title = "Blueprint: Cyberinfrastructure Center of Excellence", subtitle = "arXiv", year = "2021", url = "https://publications.utah.edu/publications/Dee2021a/2103.04195.pdf", } @Article{SCI:Dri2021a, author = "T.P. Driscoll and T.C. Bidone and S.J. Ahn and A. Yu and A. Groisman and G.A. Voth and M.A. Schwartz", title = "Integrin-Based Mechanosensing through Conformational Deformation", journal = "Biophysical Journal", year = "2021", url = "https://publications.utah.edu/publications/Dri2021a/1-s2.0-S000634952100744X-main.pdf", } @Article{SCI:Dub2021a, author = "A. Dubey and M. Berzins and C. Burstedde and M.l L. Norman and D. Unat and M. Wahib", title = "Structured Adaptive Mesh Refinement Adaptations to Retain Performance Portability With Increasing Heterogeneity", journal = "Computing in Science & Engineering", volume = "23", number = "5", pages = "62-66", year = "2021", issn = "1521-9615", url = "https://publications.utah.edu/publications/Dub2021a/Adaptive_Mesh_Refinement_Adaptations_for_Platform_Heterogeneity.pdf", } @Article{SCI:Foo2021a, author = "M. D. Foote and P. E. Dennison and P. R. Sullivan and K. B. O'Neill and A. K. Thorpe and D. R. Thompson and D. H. Cusworth and R. Duren and S. Joshi", title = "Impact of scene-specific enhancement spectra on matched filter greenhouse gas retrievals from imaging spectroscopy", journal = "Remote Sensing of Environment", volume = "264", pages = "112574", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Foo2021a/1-s2.0-S0034425721002947-main2.pdf", } @Article{SCI:Gad2021a, author = "K. Gadhave and J. Görtler and Z. Cutler and C. Nobre and O. Deussen and M. Meyer and J.M. Phillips and A. Lex", title = "Predicting intent behind selections in scatterplot visualizations", journal = "Information Visualization", volume = "20", number = "4", pages = "207-228", year = "2021", url = "https://publications.utah.edu/publications/Gad2021a/14738716211038604.pdf", } @Misc{SCI:Gad2021b, author = "K. Gadhave and Z.T. Cutler and A. Lex", title = "Reusing Interactive Analysis Workflows", subtitle = "OSF Preprints", year = "2021", url = "https://publications.utah.edu/publications/Gad2021b/paper_2021_reusing.pdf", } @Article{SCI:Goo2021a, author = "W. W. Good and B. Zenger and J. A. Bergquist and L. C. Rupp and K. K. Gillette and M. A.F. Gsell and G. Plank and R. S. MacLeod", title = "Quantifying the spatiotemporal influence of acute myocardial ischemia on volumetric conduction velocity", journal = "Journal of Electrocardiology", volume = "66", pages = "86-94", year = "2021", publisher = "Churchill Livingstone", url = "https://publications.utah.edu/publications/Goo2021a/1-s2.0-S0022073621000601-main.pdf", } @Article{SCI:Goo2021b, author = "W. W. Good and K. Gillette and B. Zenger and J. Bergquist and L. C. Rupp and J. D. Tate and D. Anderson and M. Gsell and G. Plank and R. S. Macleod", title = "Estimation and validation of cardiac conduction velocity and wavefront reconstruction using epicardial and volumetric data", journal = "IEEE Transactions on Biomedical Engineering", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Goo2021b/09390216.pdf", } @InProceedings{SCI:Goo2021c, author = "A. A. Gooch and S. Petruzza and A. Gyulassy and G. Scorzelli and V. Pascucci and L. Rantham and W. Adcock and C. Coopmans", title = "Lessons learned towards the immediate delivery of massive aerial imagery to farmers and crop consultants", booktitle = "Autonomous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping VI", volume = "11747", pages = "22 -- 34", year = "2021", publisher = "International Society for Optics and Photonics", url = "https://publications.utah.edu/publications/Goo2021c/117470A.pdf", } @Article{SCI:Goo2021d, author = "W. W. Good and B. Zenger and J. A. Bergquist and L. C. Rupp and K. Gillett and N. Angel and D. Chou and G. Plank and R. S. MacLeod", title = "Combining endocardial mapping and electrocardiographic imaging (ECGI) for improving PVC localization: A feasibility study", journal = "Journal of Electrocardiology", year = "2021", issn = "0022-0736", url = "https://publications.utah.edu/publications/Goo2021d/1-s2.0-S0022073621001783-main.pdf", } @InProceedings{SCI:Hol2021b, author = "J. K. Holmen and D. Sahasrabudhe and M. Berzins", title = "A Heterogeneous MPI+PPL Task Scheduling Approach for Asynchronous Many-Task Runtime Systems", booktitle = "Proceedings of the Practice and Experience in Advanced Research Computing 2021 on Sustainability, Success and Impact (PEARC21)", year = "2021", publisher = "ACM", url = "https://publications.utah.edu/publications/Hol2021b/heterogeneous-MPIPPL-task-scheduling.pdf", } @TechReport{SCI:Hol2021d, author = "J. K. Holmen and D. Sahasrabudhe and M. Berzins and A. Bardakoff and T. J. Blattner and . Keyrouz", title = "Uintah+Hedgehog: Combining Parallelism Models for End-to-End Large-Scale Simulation Performance", year = "2021", institution = "Scientific Computing and Imaging Institute", url = "https://publications.utah.edu/publications/Hol2021d/UUSCI-2021-002.pdf", } @InProceedings{SCI:Hou2021a, author = "Z. Houmani and D. Balouek-Thomert and E. Caron and M. Parashar", title = "Enabling microservices management for Deep Learning applications across the Edge-Cloud Continuum", booktitle = "SBAC-PAD 2021 - IEEE 33rd International Symposium on Computer Architecture and High Performance Computing", year = "2021", month = "October", url = "https://publications.utah.edu/publications/Hou2021a/SBAC_PAD2021_Zeina.pdf", } @InProceedings{SCI:Hua2021a, author = "X. Huang and P. Klacansky and S. Petruzza and A. Gyulassy and P.T. Bremer and V. Pascucci", title = "Distributed merge forest: a new fast and scalable approach for topological analysis at scale", booktitle = "Proceedings of the ACM International Conference on Supercomputing", pages = "367-377", year = "2021", url = "https://publications.utah.edu/publications/Hua2021a/3447818.3460358.pdf", } @Misc{SCI:Jen2021a, author = "M. H. Jensen and S. Joshi and S. Sommer", title = "Bridge Simulation and Metric Estimation on Lie Groups", subtitle = "arXiv preprint arXiv:2106.03431", year = "2021", url = "https://publications.utah.edu/publications/Jen2021a/2106.03431.pdf", } @Misc{SCI:Jen2021b, author = "M. Højgaard Jensen and L. Hilgendorf and S. Joshi and S. Sommer", title = "Bridge Simulation on Lie Groups and Homogeneous Spaces with Application to Parameter Estimation", subtitle = "arXiv:2112.00866", year = "2021", url = "https://publications.utah.edu/publications/Jen2021b/2112.00866.pdf", } @InProceedings{SCI:Jia2021a, author = "X. Jiang and J. C. Font and J. A. Bergquist and B. Zenger and W. W. Good and D. H. Brooks and R. S. MacLeod and L. Wang", title = "Deep Adaptive Electrocardiographic Imaging with Generative Forward Model for Error Reduction", title_url = "https://books.google.com/books?hl=en&lr=&id=KNwzEAAAQBAJ&oi=fnd&pg=PA471&dq=info:vgHeewsXiCkJ:scholar.google.com&ots=6yKzgfMUZ2&sig=1_MvscYHjeQXfrsbkGvlewePnck#v=onepage&q&f=false", booktitle = "Functional Imaging and Modeling of the Heart: 11th International Conference", journal = "Functional Imaging and Modeling of the Heart: 11th International Conference", volume = "12738", pages = "471", year = "2021", publisher = "Springer Nature", } @Article{SCI:Joh2021a, author = "C. R. Johnson", title = "Translational computer science at the scientific computing and imaging institute", journal = "Journal of Computational Science", volume = "52", pages = "101217", year = "2021", issn = "1877-7503", url = "https://publications.utah.edu/publications/Joh2021a/1-s2.0-S1877750320305172-main.pdf", } @Article{SCI:Jun2021a, author = "A. Junn and J. Dinis and S. C. Hauc and M. K. Bruce and K. E. Park and W. Tao and C. Christensen and R. Whitaker and J. A. Goldstein and M. Alperovich", title = "Validation of Artificial Intelligence Severity Assessment in Metopic Craniosynostosis", journal = "The Cleft Palate-Craniofacial Journal", year = "2021", publisher = "SAGE Publications", url = "https://publications.utah.edu/publications/Jun2021a/10556656211061021.pdf", } @Article{SCI:Kam2021a, author = "R. Kamali and J. Kump and E. Ghafoori and M. Lange and N. Hu and T. J. Bunch and D. J. Dosdall and R. S. Macleod and R. Ranjan", title = "Area Available for Atrial Fibrillation to Propagate Is an Important Determinant of Recurrence After Ablation", title_url = "https://www.sciencedirect.com/science/article/abs/pii/S2405500X20311890#abs0010", journal = "JACC: Clinical Electrophysiology", year = "2021", publisher = "Elsevier", } @Article{SCI:Kes2021a, author = "V. Keshavarzzadeh and M. Alirezaei and T. Tasdizen and R. M. Kirby", title = "Image-Based Multiresolution Topology Optimization Using Deep Disjunctive Normal Shape Model", journal = "Computer-Aided Design", volume = "130", pages = "102947", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Kes2021a/1-s2.0-S0010448520301408-main.pdf", } @Article{SCI:Kes2021b, author = "V. Keshavarzzadeh and R. M. Kirby and A. Narayan", title = "Multilevel Designed Quadrature for Partial Differential Equations with Random Inputs", journal = "SIAM Journal on Scientific Computing", volume = "43", number = "2", pages = "A1412-A1440", year = "2021", publisher = "Society for Industrial and Applied Mathematics", url = "https://publications.utah.edu/publications/Kes2021b/20m1333407.pdf", } @Article{SCI:Kes2021c, author = "V. Keshavarzzadeh and R. M. Kirby and A. Narayan", title = "Robust topology optimization with low rank approximation using artificial neural networks", title_url = "https://link.springer.com/article/10.1007/s00466-021-02069-3#citeas", journal = "Computational Mechanics", year = "2021", } @Misc{SCI:Kes2021d, author = "V. Keshavarzzadeh and S. Zhe and R.M. Kirby and A. Narayan", title = "GP-HMAT: Scalable, ${O}(n\log (n)) $ Gaussian Process Regression with Hierarchical Low-Rank Matrices", subtitle = "arXiv preprint arXiv:2201.00888", year = "2021", url = "https://publications.utah.edu/publications/Kes2021d/2201.00888.pdf", } @Misc{SCI:Kir2021a, author = "R. Kirby and K. Nottingham and R. Roy and S. Godil and B. Catanzaro", title = "Guiding Global Placement With Reinforcement Learning", subtitle = "arXiv preprint arXiv:2109.02631", year = "2021", url = "https://publications.utah.edu/publications/Kir2021a/2109.02631.pdf", } @Article{SCI:Kou2021a, author = "D Kouřil and T Isenberg and B Kozlíková and M Meyer and E Gröller and I Viola", title = "HyperLabels---Browsing of Dense and Hierarchical Molecular 3D Models", journal = "IEEE transactions on visualization and computer graphics", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Kou2021a/Kouril_2020_HBD.pdf", } @Misc{SCI:Kri2021a, author = "A.S. Krishnapriyan and A. Gholami and S. Zhe and R.M. Kirby and M.W. Mahoney", title = "Characterizing possible failure modes in physics-informed neural networks", subtitle = "arXiv preprint arXiv:2109.01050", year = "2021", url = "https://publications.utah.edu/publications/Kri2021a/2109.01050.pdf", } @InProceedings{SCI:Kuh2021a, author = "L. Kühnel and T. Fletcher and S. Joshi and S. Sommer", title = "Latent Space Geometric Statistics", booktitle = "Pattern Recognition. ICPR International Workshops and Challenges: Virtual Event, January 10–15, 2021, Proceedings, Part VI", pages = "163-178", year = "2021", publisher = "Springer International Publishing", } @Article{SCI:Lan2021a, author = "D. Lange and E. Polanco and R. Judson-Torres and T. Zangle and A. Lex", title = "Loon: Using Exemplars to Visualize Large Scale Microscopy Data", journal = "OSF Preprints", year = "2021", url = "https://publications.utah.edu/publications/Lan2021a/vis21b-sub1271-i6 1.pdf", } @Misc{SCI:Lan2021b, author = "R. B. Lanfredi and M. Zhang and W. F. Auffermann and J. Chan and P. T. Duong and V. Srikumar and T. Drew and J. D. Schroeder and T. Tasdizen", title = "REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays", subtitle = "arXiv:2109.14187", year = "2021", url = "https://publications.utah.edu/publications/Lan2021b/2109.14187.pdf", } @Misc{SCI:Lan2021c, author = "R.B. Lanfredi and A. Arora and T. Drew and J.D. Schroeder and T. Tasdizen", title = "Comparing radiologists’ gaze and saliency maps generated by interpretability methods for chest x-rays", subtitle = "arXiv:2112.11716v1", year = "2021", url = "https://publications.utah.edu/publications/Lan2021c/2112.11716.pdf", } @Misc{SCI:Lau2021a, author = "E. Laughton and V. Zala and A. Narayan and R. M. Kirby and D. Moxey", title = "Fast Barycentric-Based Evaluation Over Spectral/hp Elements", subtitle = "arXiv preprint arXiv:2103.03594", year = "2021", url = "https://publications.utah.edu/publications/Lau2021a/2103.03594.pdf", } @InProceedings{SCI:Li2021a, author = "Z. Li and H. Menon and K. Mohror and P. T. Bremer and Y. Livant and V. Pascucci", title = "Understanding a program's resiliency through error propagation", booktitle = "Proceedings of the 26th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming", pages = "362-373", year = "2021", publisher = "ACM", url = "https://publications.utah.edu/publications/Li2021a/3437801.3441589.pdf", } @Misc{SCI:Li2021b, author = "S. Li and Z. Wang and A. Narayan and R. Kirby and S. Zhe", title = "Meta-Learning with Adjoint Methods", subtitle = "arXiv preprint arXiv:2110.08432", year = "2021", url = "https://publications.utah.edu/publications/Li2021b/2110.08432.pdf", } @Misc{SCI:Liu2021a, author = "Z. Liu and A. Narayan", title = "On the computation of recurrence coefficients for univariate orthogonal polynomials", subtitle = "arXiv preprint arXiv:2101.11963", year = "2021", url = "https://publications.utah.edu/publications/Liu2021a/2101.11963.pdf", } @Article{SCI:Ly2021a, author = "C. Ly and C. Nizinski and C. Vachet and L. McDonald and T. Tasdizen", title = "Learning to Estimate the Composition of a Mixture with Synthetic Data", journal = "Microscopy and Microanalysis", year = "2021", url = "https://publications.utah.edu/publications/Ly2021a/learning-to-estimate-the-composition-of-a-mixture-with-synthetic-data.pdf", } @Article{SCI:Ly2021b, author = "C. Ly and C. A. Nizinski and A. Toydemir and C. Vachet and L. W. McDonald and T. Tasdizen", title = "Determining the Composition of a Mixed Material with Synthetic Data", journal = "Microscopy and Microanalysis", pages = "1--11", year = "2021", publisher = "Cambridge University Press", url = "https://publications.utah.edu/publications/Ly2021b/determining_the_composition_of_a_mixed_material_with_synthetic_data.pdf", } @InProceedings{SCI:Mar2021a, author = "N. Marshak and P. Grosset and A. Knoll and J. P. Ahrens and C. R. Johnson", title = "Evaluation of GPU Volume Rendering in PyTorch Using Data-Parallel Primitives", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization (EGPGV)", year = "2021", url = "https://publications.utah.edu/publications/Mar2021a/evaluation_pytorch_dpp.pdf", } @Article{SCI:Mcd2021a, author = "T. McDonald and R. Shrestha and X. Yi and H. Bhatia and D. Chen and D. Goswami and V. Pascucci and T. Turbyville and P‐T Bremer", title = "Leveraging Topological Events in Tracking Graphs for Understanding Particle Diffusion", journal = "Computer Graphics Forum", volume = "40", number = "3", pages = "251-262", year = "2021", url = "https://publications.utah.edu/publications/Mcd2021a/cgf.14304.pdf", } @Misc{SCI:Moo2021a, author = "R. A. Moore and A. Narayan", title = "Adaptive Density Tracking by Quadrature for Stochastic Differential Equations", subtitle = "arXiv preprint arXiv:2105.08148", year = "2021", url = "https://publications.utah.edu/publications/Moo2021a/2105.08148.pdf", } @Misc{SCI:Mor2021a, author = "N. Morrical and J. Tremblay and Y. Lin and S. Tyree and S. Birchfield and V. Pascucci and I. Wald", title = "NViSII: A Scriptable Tool for Photorealistic Image Generation", subtitle = "arXiv preprint arXiv:2105.13962", year = "2021", url = "https://publications.utah.edu/publications/Mor2021a/2105.13962.pdf", } @Article{SCI:Nar2021a, author = "A. Narayan and L. Yan and T. Zhou", title = "Optimal design for kernel interpolation: Applications to uncertainty quantification", journal = "Journal of Computational Physics", volume = "430", pages = "110094", year = "2021", publisher = "Academic Press", url = "https://publications.utah.edu/publications/Nar2021a/1-s2.0-S0021999120308688-main.pdf", } @Article{SCI:Ngu2021a, author = "Q. C Nguyen and J. M. Keralis and P. Dwivedi and A. E. Ng and M. Javanmardi and S. Khanna and Y. Huang and K. D. Brunisholz and A. Kumar and T. Tasdizen", title = "Leveraging 31 Million Google Street View Images to Characterize Built Environments and Examine County Health Outcomes ", journal = "Public Health Reports", volume = "136", number = "2", pages = "201-211", year = "2021", publisher = "SAGE Publications", url = "https://publications.utah.edu/publications/Ngu2021a/0033354920968799.pdf", } @InBook{SCI:Niz2021a, author = "C. A. Nizinski and C. Ly and L. W. McDonald IV and T. Tasdizen", title = "Computational Image Techniques for Analyzing Lanthanide and Actinide Morphology", title_url = "https://pubs.acs.org/doi/pdf/10.1021/bk-2021-1388.ch006", booktitle = "Rare Earth Elements and Actinides: Progress in Computational Science Applications", pages = "133-155", year = "2021", chapter = "6", } @InProceedings{SCI:Nob2021a, author = "C. Nobre and D. Wootton and Z. T. Cutler and L. Harrison and H. Pfister and A. Lex", title = "reVISit: Looking Under the Hood of Interactive Visualization Studies", booktitle = "SIGCHI Conference on Human Factors in Computing Systems (CHI)", pages = "1--12", year = "2021", publisher = "ACM", url = "https://publications.utah.edu/publications/Nob2021a/2021_chi_revisit.pdf", } @Misc{SCI:Nou2021a, author = "A. Nouri and P.E. Davis and P. Subedi and M. Parashar", title = "Scalable Graph Embedding LearningOn A Single GPU", subtitle = "arXiv preprint arXiv:2110.06991", year = "2021", url = "https://publications.utah.edu/publications/Nou2021a/2110.06991.pdf", } @Misc{SCI:Nou2021b, author = "A. Nouri and P.E. Davis and P. Subedi and M. Parashar", title = "Exploring the Role of Machine Learning in Scientific Workflows: Opportunities and Challenges", subtitle = "arXiv preprint arXiv:2110.13999", year = "2021", url = "https://publications.utah.edu/publications/Nou2021b/2110.13999.pdf", } @Misc{SCI:Pen2021a, author = "M. Penwarden and S. Zhe and A. Narayan and R. M. Kirby", title = "Multifidelity Modeling for Physics-Informed Neural Networks (PINNs)", subtitle = "arXiv preprint arXiv:2106.13361", year = "2021", url = "https://publications.utah.edu/publications/Pen2021a/2106.13361.pdf", } @Misc{SCI:Pen2021b, author = "M. Penwarden and S. Zhe and A. Narayan and R. M. Kirby", title = "Physics-Informed Neural Networks (PINNs) for Parameterized PDEs: A Metalearning Approach", subtitle = "arXiv preprint arXiv:2110.13361", year = "2021", url = "https://publications.utah.edu/publications/Pen2021b/2110.13361.pdf", } @Article{SCI:Pul2021a, author = "R. Pulch and A. Narayan and T. Stykel", title = "Sensitivity analysis of random linear differential–algebraic equations using system norms", journal = "Journal of Computational and Applied Mathematics", pages = "113666", year = "2021", publisher = "North-Holland", url = "https://publications.utah.edu/publications/Pul2021a/1-s2.0-S0377042721002880-main.pdf", } @Misc{SCI:Qia2021a, author = "E. Qian and J.M. Tabeart and C. Beattie and S. Gugercin and J. Jiang and P. Kramer and A. Narayan", title = "Model Reduction of Linear Dynamical Systems via Balancing for Bayesian Inference", subtitle = "arXiv preprint arXiv:2111.13246", year = "2021", url = "https://publications.utah.edu/publications/Qia2021a/2111.13246.pdf", } @Article{SCI:Qin2021a, author = "Y. Qin and A. Narayan and K. Cheng and P. Wang", title = "An efficient method of calculating composition-dependent inter-diffusion coefficients based on compressed sensing method", journal = "Computational Materials Science", volume = "188", pages = "110145", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Qin2021a/1-s2.0-S0927025620306364-main.pdf", } @Article{SCI:Qin2021b, author = "Y. Qin and I. Rodero and A. Simonet and C. Meertens and D. Reiner and J. Riley and M. Parashar", title = "Leveraging user access patterns and advanced cyberinfrastructure to accelerate data delivery from shared-use scientific observatories", journal = "Future Generation Computer Systems", pages = "14-27", year = "2021", publisher = "North-Holland", url = "https://publications.utah.edu/publications/Qin2021b/1-s2.0-S0167739X21000844-main.pdf", } @InProceedings{SCI:Qin2021c, author = "Y. Qin and I. Rodero and M. Parashar", title = "Facilitating Data Discovery for Large-scale Science Facilities using Knowledge Networks", booktitle = "2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS)", pages = "651-660", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Qin2021c/09460512.pdf", } @Misc{SCI:Qin2021d, author = "Y. Qin and I. Rodero and M. Parashar", title = "Toward Democratizing Access to Facilities Data: A Framework for Intelligent Data Discovery and Delivery", subtitle = "arXiv:2112.06479", year = "2021", url = "https://publications.utah.edu/publications/Qin2021d/2112.06479.pdf", } @Article{SCI:Rab2021a, author = "A.S. Rababah and L.R. Bear and Y.S. Dogrusoz and W. Good and J. Bergquist and J. Stoks and R. MacLeod and K. Rjoob and M. Jennings and J. Mclaughlin and D. D. Finlay", title = "Reducing Line-of-block Artifacts in Cardiac Activation Maps Estimated Using ECG Imaging: A Comparison of Source Models and Estimation Methods", journal = "Computers in Biology and Medicine", volume = "136", pages = "104666", year = "2021", url = "https://publications.utah.edu/publications/Rab2021a/1-s2.0-S0010482521004601-main.pdf", } @InBook{SCI:Ram2021a, author = "N. Ramesh and T. Tasdizen", title = "Detection and segmentation in microscopy images", title_url = "https://www.sciencedirect.com/science/article/pii/B9780128149720000035", booktitle = "Computer Vision for Microscopy Image Analysis", pages = "43-71", year = "2021", publisher = "Academic Press", } @InBook{SCI:Ras2021a, author = "M. Rasouli and R. M. Kirby and H. Sundar", title = "A Compressed, Divide and Conquer Algorithm for Scalable Distributed Matrix-Matrix Multiplication", booktitle = "The International Conference on High Performance Computing in Asia-Pacific Region", pages = "110-119", year = "2021", url = "https://publications.utah.edu/publications/Ras2021a/HPCAsia2021.pdf", } @Article{SCI:Rat2021a, author = "A. Rathore and N. Chalapathi and S. Palande and Bei Wang", title = "TopoAct: Visually Exploring the Shape of Activations in Deep Learning", journal = "Computer Graphics Forum", volume = "40", number = "1", pages = "382-397", year = "2021", url = "https://publications.utah.edu/publications/Rat2021a/TopoAct_BeiWang_2021.pdf", } @Article{SCI:Rau2021a, author = "A. Rauff and L.H. Timmins and R.T. Whitaker and J.A. Weiss", title = "A Nonparametric Approach for Estimating Three-Dimensional Fiber Orientation Distribution Functions (ODFs) in Fibrous Materials", journal = "IEEE Transactions on Medical Imaging", year = "2021", url = "https://publications.utah.edu/publications/Rau2021a/A_Nonparametric_Approach_for_Estimating_Three-Dimensional_Fiber_Orientation_Distribution_Functions_ODFs_in_Fibrous_Materials.pdf", } @Article{SCI:Raz2021a, author = "M. Razi and M. Kirby and A. Narayan", title = "Kernel optimization for Low-Rank Multi-Fidelity Algorithms", title_url = "http://www.dl.begellhouse.com/references/52034eb04b657aea,44206a5570d76285,2b726790316fe2e0.html", journal = "International Journal for Uncertainty Quantification", pages = "31-54", year = "2021", publisher = "Begel House Inc.", } @InBook{SCI:Ros2021a, author = "P. Rosen and A. Seth and E. Mills and A. Ginsburg and J. Kamenetzky and J. Kern and C.R. Johnson and B. Wang", title = "Using Contour Trees in the Analysis and Visualization of Radio Astronomy Data Cubes", title_url = "https://link.springer.com/chapter/10.1007/978-3-030-83500-2_6", booktitle = "Topological Methods in Data Analysis and Visualization VI", pages = "87--108", year = "2021", publisher = "Springer-Verlag", } @InProceedings{SCI:Roy2021a, author = "R. Roy and J. Raiman and N. Kant and I. Elkin and R. Kirby and M. Siu and S. Oberman and S. Godil and B. Catanzaro", title = "PrefixRL: Optimization of Parallel Prefix Circuits using Deep Reinforcement Learning", booktitle = "2021 58th ACM/IEEE Design Automation Conference (DAC)", pages = "853-858", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Roy2021a/PrefixRL_Optimization_of_Parallel_Prefix_Circuits_using_Deep_Reinforcement_Learning.pdf", } @PhdThesis{SCI:Sah2021a, author = "Damodar Sahasrabudhe", title = "Enhancing Asynchronous Many-Task Runtime Systems for Next-Generation Architectures and Exascale Supercomputers", year = "2021", school = "School of Computing, University of Utah, Salt Lake City, UT, USA", url = "https://publications.utah.edu/publications/Sah2021a/damodar_thesis.pdf", } @Article{SCI:Sal2021a, author = "J. Salinet and R. Molero and F. S. Schlindwein and J. Karel and M. Rodrigo and J. L. Rojo-Álvarez and O. Berenfeld and A. M. Climent and B. Zenger and F. Vanheusden and J. G. S. Paredes and R. MacLeod and F. Atienza and M. S. Guillem and M. Cluitmans and P. Bonizzi", title = "Electrocardiographic imaging for atrial fibrillation: a perspective from computer models and animal experiments to clinical value", journal = "Frontiers in Physiology", volume = "12", year = "2021", publisher = "Frontiers Media", month = "April", url = "https://publications.utah.edu/publications/Sal2021a/ElectrocardiographicImagingforAtrialFibrillationAPerspectiveFromComputerModelsandAnimalExperimentstoClinicalValue_fphys-12-653013.pdf", } @Article{SCI:San2021a, author = "J. Sandhu and T. Bidone and R. D. Rabbitt", title = "Prestin Generates Instantaneous Force in Outer Hair Cell Membranes", title_url = "https://www.sciencedirect.com/science/article/pii/S0006349520319032?via%3Dihub", journal = "Biophysical Journal", volume = "120", number = "3", year = "2021", } @InProceedings{SCI:San2021b, author = "S. Sane and T. Athawale and and C.R. Johnson", title = "Visualization of Uncertain Multivariate Data via Feature Confidence Level-Sets", booktitle = "EuroVis 2021", year = "2021", url = "https://publications.utah.edu/publications/San2021b/043-047.pdf", } @InProceedings{SCI:San2021d, author = "S. Sane and A. Yenpure and R. Bujack and M. Larsen and K. Moreland and C. Garth and C. R. Johnson and and H. Childs", title = "Scalable In Situ Computation of Lagrangian Representations via Local Flow Maps", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization", year = "2021", publisher = "The Eurographics Association", url = "https://publications.utah.edu/publications/San2021d/019-029.pdf", } @InProceedings{SCI:San2021e, author = "S. Sane and C. R. Johnson and H. Childs", title = "Investigating In Situ Reduction via Lagrangian Representations for Cosmology and Seismology Applications", title_url = "https://link.springer.com/chapter/10.1007/978-3-030-77961-0_36", booktitle = "Computational Science -- ICCS 2021", pages = "436--450", year = "2021", publisher = "Springer International Publishing", url = "https://publications.utah.edu/publications/San2021e/127420419.pdf", } @Misc{SCI:Sin2021a, author = "A. Singh and M. Bauer and S. Joshi", title = "Physics Informed Convex Artificial Neural Networks (PICANNs) for Optimal Transport based Density Estimation", subtitle = "arXiv", year = "2021", url = "https://publications.utah.edu/publications/Sin2021a/2104.01194.pdf", } @InBook{SCI:Sol2021a, author = "W. T. Sołowski and M. Berzins and W. Coombs and J. Guilkey and M. Möller and Q. A. Tran and T. Adibaskoro and S. Seyedan and R. Tielen and K. Soga", title = "Material point method: Overview and challenges ahead (with videos)", booktitle = "Advances in Applied Mechanics", volume = "14", pages = "113-204", year = "2021", chapter = "2", publisher = "Elsevier", edition = "1", isbn = "978-0-323-88519-5", url = "https://publications.utah.edu/publications/Sol2021a/CH0003 pre-proof.pdf", } @InBook{SCI:Sol2021b, author = "W. T. Sołowski and M. Berzins and W. Coombs and J. Guilkey and M. Möller and Q. A. Tran and T. Adibaskoro and S. Seyedan and R. Tielen and K. Soga", title = "Material point method: Overview and challenges ahead (without videos)", booktitle = "Advances in Applied Mechanics", volume = "14", pages = "113-204", year = "2021", chapter = "2", publisher = "Elsevier", edition = "1", url = "https://publications.utah.edu/publications/Sol2021b/CH0003 pre-proof-without-videos.pdf", } @InProceedings{SCI:Sub2021a, author = "P. Subedi and P.E .Davis and M. Parashar", title = "RISE: Reducing I/O Contention in Staging-based Extreme-Scale In-situ Workflows", title_url = "https://ieeexplore.ieee.org/abstract/document/9556012/", booktitle = "2021 IEEE International Conference on Cluster Computing (CLUSTER)", pages = "146--156", year = "2021", } @Article{SCI:Suc2021a, author = "E. Suchyta and S. Klasky and N. Podhorszki and M. Wolf and A. Adesoji and C.S. Chang and J. Choi and P. E. Davis and J. Dominski and S. Ethier and I. Foster and K. Germaschewski and B. Geveci and C. Harris and K. A. Huck and Q. Liu and J. Logan and K. Mehta and G. Merlo and S. V. Moore and T. Munson and M. Parashar and D. Pugmire and M. S. Shephard and C. W. Smith and P. Subedi and L. Wan and R. Wang and S. Zhang", title = "The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science", journal = "The International Journal of High Performance Computing Applications", pages = "10943420211019119", year = "2021", publisher = "SAGE Publications", url = "https://publications.utah.edu/publications/Suc2021a/10943420211019119.pdf", } @Misc{SCI:Sun2021a, author = "T. Sun and D. Li and B. Wang", title = "Decentralized Federated Averaging", subtitle = "arXiv preprint arXiv:2104.11375", year = "2021", url = "https://publications.utah.edu/publications/Sun2021a/2104.11375.pdf", } @Misc{SCI:Sun2021b, author = "T. Sun and D. Li and B. Wang", title = "Stability and Generalization of the Decentralized Stochastic Gradient Descent", subtitle = "arXiv preprint arXiv:2102.01302", year = "2021", url = "https://publications.utah.edu/publications/Sun2021b/2102.01302.pdf", } @InProceedings{SCI:Tao2021a, author = "W. Tao and R. Bhalodia and R. Whitaker", title = "A Gaussian Process Model for Unsupervised Analysis of High Dimensional Shape Data", title_url = "https://link.springer.com/chapter/10.1007/978-3-030-87589-3_37", booktitle = "Machine Learning in Medical Imaging", pages = "356--365", year = "2021", publisher = "Springer International Publishing", } @InProceedings{SCI:Tat2021a, author = "J. D. Tate and W. W. Good and N. Zemzemi and M. Boonstra and P. van Dam and D. H. Brooks and A. Narayan and R. S. MacLeod", title = "Uncertainty Quantification of the Effects of Segmentation Variability in ECGI", title_url = "https://link.springer.com/chapter/10.1007/978-3-030-78710-3_49", booktitle = "Functional Imaging and Modeling of the Heart", pages = "515--522", year = "2021", publisher = "Springer International Publishing", } @Article{SCI:Tat2021b, author = "J. Tate and S. Rampersad and C. Charlebois and Z. Liu and J. Bergquist and D. White and L. Rupp and D. Brooks and A. Narayan and R. MacLeod", title = "Uncertainty Quantification in Brain Stimulation using UncertainSCI", journal = "Brain Stimulation: Basic, Translational, and Clinical Research in Neuromodulation", volume = "14", number = "6", pages = "1659-1660", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Tat2021b/PIIS1935861X21004721.pdf", } @Misc{SCI:Tho2021a, author = "M. Thorpe and B. Wang", title = "Robust Certification for Laplace Learning on Geometric Graphs", subtitle = "arXiv preprint arXiv:2104.10837", year = "2021", url = "https://publications.utah.edu/publications/Tho2021a/2104.10837.pdf", } @Article{SCI:Tor2021a, author = "J. P. Torres and Z. Lin and M. Watkins and P. F. Salcedo and R. P. Baskin and S. Elhabian and H. Safavi-Hemami and D. Taylor and J. Tun and G. P. Concepcion and N. Saguil and A. A. Yanagihara and Y. Fang and J. R. McArthur and H. Tae and R. K. Finol-Urdaneta and B. D. Özpolat and B. M. Olivera and E. W. Schmidt", title = "Small-molecule mimicry hunting strategy in the imperial cone snail, Conus imperialis", journal = "Science Advances", volume = "7", number = "11", year = "2021", publisher = "American Association for the Advancement of Science", url = "https://publications.utah.edu/publications/Tor2021a/eabf2704.full.pdf", } @Article{SCI:Tru2021a, author = "N. Truong and C. Yuksel and C. Watcharopas and J. A. Levine and R. M. Kirby", title = "Particle Merging-and-Splitting", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tru2021a/09468693.pdf", } @InProceedings{SCI:Ush2021a, author = "W. Usher and X. Huang and S. Petruzza and S. Kumar and S. R. Slattery and S. T. Reeve and F. Wang and C. R. Johnson and and V. Pascucci", title = "Adaptive Spatially Aware I/O for Multiresolution Particle Data Layouts", booktitle = "IPDPS", year = "2021", } @Article{SCI:Ved2021a, author = "V. Vedam-Mai and K. Deisseroth and J. Giordano and G. Lazaro-Munoz and W. Chiong and N. Suthana and J. Langevin and J. Gill and W. Goodman and N. R. Provenza and C. H. Halpern and R. S. Shivacharan and T. N. Cunningham and S. A. Sheth and N. Pouratian and K. W. Scangos and H. S. Mayberg and A. Horn and K. A. Johnson and C. R. Butson and R. Gilron and C. de Hemptinne and R. Wilt and M. Yaroshinsky and S. Little and P. Starr and G. Worrell and P. Shirvalkar and E. Chang and J. Volkmann and M. Muthuraman and S. Groppa and A. A. Kühn and L. Li and M. Johnson and K. J. Otto and R. Raike and S. Goetz and C. Wu and P. Silburn and B. Cheeran and Y. J. Pathak and M. Malekmohammadi and A. Gunduz and J. K. Wong and S. Cernera and A. W. Shukla and A. Ramirez-Zamora and W. Deeb and A. Patterson and K. D. Foote and M. S. Okun", title = "Proceedings of the Eighth Annual Deep Brain Stimulation Think Tank: Advances in Optogenetics, Ethical Issues Affecting DBS Research, Neuromodulatory Approaches for Depression, Adaptive Neurostimulation, and Emerging DBS Technologies", journal = "Frontiers in Human Neuroscience", volume = "15", pages = "169", year = "2021", issn = "1662-5161", url = "https://publications.utah.edu/publications/Ved2021a/fnhum-15-644593.pdf", } @Misc{SCI:Ven2021a, author = "A. Venkat and A. Gyulassy and G. Kosiba and A. Maiti and H. Reinstein and R. Gee and P.-T. Bremer and V. Pascucci", title = "Towards replacing physical testing of granular materials with a Topology-based Model", subtitle = "arXiv preprint arXiv:2109.08777", year = "2021", url = "https://publications.utah.edu/publications/Ven2021a/2109.08777.pdf", } @Article{SCI:Wan2021a, author = "B. Wang and D. Zou and Q. Gu and S. J. Osher", title = "Laplacian smoothing stochastic gradient markov chain monte carlo", journal = "SIAM Journal on Scientific Computing", volume = "43", number = "1", pages = "A26-A53", year = "2021", publisher = "SIAM", url = "https://publications.utah.edu/publications/Wan2021a/19m1294356.pdf", } @InProceedings{SCI:Wan2021b, author = "Z. Wang and W. Xing and R. Kirby and S. Zhe", title = "Multi-Fidelity High-Order Gaussian Processes for Physical Simulation", booktitle = "International Conference on Artificial Intelligence and Statistics", pages = "847-855", year = "2021", publisher = "PMLR", url = "https://publications.utah.edu/publications/Wan2021b/wang21c.pdf", } @Article{SCI:Wan2021c, author = "Y. Wan and H.A. Holman and C. Hansen", title = "Interactive Analysis for Large Volume Data from Fluorescence Microscopy at Cellular Precision", journal = "Computers & Graphics", volume = "98", pages = "138-149", year = "2021", publisher = "Pergamon", url = "https://publications.utah.edu/publications/Wan2021c/1-s2.0-S0097849321000935-main.pdf", } @InProceedings{SCI:Wan2021d, author = "Z. Wang and P. Subedi and M. Dorier and P.E. Davis and M. Parashar", title = "Facilitating Staging-based Unstructured Mesh Processing to Support Hybrid In-Situ Workflows", booktitle = "2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)", pages = "960-964", year = "2021", url = "https://publications.utah.edu/publications/Wan2021d/09460618.pdf", } @InProceedings{SCI:Wan2021e, author = "Z. Wang and M. Dorier and P. Subedi and P..E Davis and M. Parashar", title = "An Adaptive Elasticity Policy For Staging Based In-Situ Processing", booktitle = "IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS)", pages = "33-41", year = "2021", url = "https://publications.utah.edu/publications/Wan2021e/An_Adaptive_Elasticity_Policy_For_Staging_Based_In-Situ_Processing.pdf", } @InProceedings{SCI:Wan2021f, author = "Z. Wang and P. Subedi and M. Dorier and P.E. Davis and M. Parashar", title = "Adaptive Placement of Data Analysis Tasks For Staging Based In-Situ Processing", booktitle = "2021 IEEE 28th International Conference on High Performance Computing, Data, and Analytics (HiPC)", pages = "242-251", year = "2021", url = "https://publications.utah.edu/publications/Wan2021f/Adaptive_Placement_of_Data_Analysis_Tasks_For_Staging_Based_In-Situ_Processing.pdf", } @Article{SCI:Xin2021a, author = "W. W. Xing and A. A. Shah and P. Wang and S. Zhe and Q. Fu and R. M. Kirby", title = "Residual Gaussian process: A tractable nonparametric Bayesian emulator for multi-fidelity simulations", journal = "Applied Mathematical Modelling", volume = "97", pages = "36-56", year = "2021", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Xin2021a/1-s2.0-S0307904X21001724-main.pdf", } @Article{SCI:Xin2021b, author = "W. W. Xing and R. M. Kirby and S. Zhe", title = "Deep coregionalization for the emulation of simulation-based spatial-temporal fields", journal = "Journal of Computational Physics", pages = "109984", year = "2021", publisher = "Academic Press", url = "https://publications.utah.edu/publications/Xin2021b/1-s2.0-S0021999120307580-main.pdf", } @Misc{SCI:Xu2021a, author = "Y. Xu and V. Keshavarzzadeh and R. M. Kirby and A. Narayan", title = "A bandit-learning approach to multifidelity approximation", subtitle = "arXiv preprint arXiv:2103.15342", year = "2021", url = "https://publications.utah.edu/publications/Xu2021a/2103.15342.pdf", } @Misc{SCI:Xu2021b, author = "Y. Xu and A. Narayan", title = "Randomized weakly admissible meshes", subtitle = "arXiv preprint arXiv:2101.04043", year = "2021", url = "https://publications.utah.edu/publications/Xu2021b/2101.04043.pdf", } @Misc{SCI:Xu2021c, author = "Y. Xu and A. Narayan", title = "Budget-limited distribution learning in multifidelity problems", subtitle = "arXiv preprint arXiv:2105.04599", year = "2021", url = "https://publications.utah.edu/publications/Xu2021c/2105.04599.pdf", } @Misc{SCI:Zal2021a, author = "V. Zala and R. M. Kirby and A. Narayan", title = "Structure-preserving Nonlinear Filtering for Continuous and Discontinuous Galerkin Spectral/hp Element Methods", subtitle = "arXiv preprint arXiv:2106.08316", year = "2021", url = "https://publications.utah.edu/publications/Zal2021a/2106.08316.pdf", } @InProceedings{SCI:Zam2021a, author = "R. Zambre and D. Sahasrabudhe and H. Zhou and M. Berzins and A. Chandramowlishwaran and P. Balaji", title = "Logically Parallel Communication for Fast MPI+Threads Communication", booktitle = "Proceedings of the Transactions on Parallel and Distributed Computing", year = "2021", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Zam2021a/tpds_21_preprint.pdf", } @Article{SCI:Zen2021a, author = "B. Zenger and W. W. Good and J. A. Bergquist and L. C. Rupp and M. Perez and G. J. Stoddard and V. Sharma and R. S. MacLeod", title = "Transient recovery of epicardial and torso ST-segment ischemic signals during cardiac stress tests: A possible physiological mechanism", journal = "Journal of Electrocardiology", year = "2021", publisher = "Churchill Livingstone", url = "https://publications.utah.edu/publications/Zen2021a/1-s2.0-S0022073621001503-main.pdf", } @Article{SCI:Zho2021a, author = "L. Zhou and C. R. Johnson and D. Weiskopf", title = "Data-Driven Space-Filling Curves", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "27", number = "2", pages = "1591-1600", year = "2021", publisher = "IEEE", url = "https://publications.utah.edu/publications/Zho2021a/09222374.pdf", } @InProceedings{SCI:Zho2021b, author = "Y. Zhou and N. Chalapathi and A. Rathore and Y. Zhao and Bei Wang", title = "Mapper Interactive: A Scalable, Extendable, and Interactive Toolbox for the Visual Exploration of High-Dimensional Data.", booktitle = "IEEE Pacific Visualization Symposium", year = "2021", url = "https://publications.utah.edu/publications/Zho2021b/2011.03209.pdf", } @Article{SCI:Ath2020a, author = "T. M. Athawale and D. Maljovec and L. Yan and C. R. Johnson and V. Pascucci and and B. Wang", title = "Uncertainty Visualization of 2D Morse Complex Ensembles using Statistical Summary Maps", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2020", url = "https://publications.utah.edu/publications/Ath2020a/msc_TVCG_Tushar_Athawale.pdf", } @Article{SCI:Chi2020a, author = "H. Childs and S. D. Ahern and J. Ahrens and A. C. Bauer and J. Bennett and E. W. Bethel and P. Bremer and E. Brugger and J. Cottam and M. Dorier and S. Dutta and J. M. Favre and T. Fogal and S. Frey and C. Garth and B. Geveci and W. F. Godoy and C. D. Hansen and C. 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Boutte and S. Ames and G. Abdulla and V. Balaji and R. Ferraro and A. Radhakrishnan and L. Carriere and T. Maxwell and G. Scorzelli and V. Pascucci", title = "Distributed Resources for the Earth System Grid Advanced Management (DREAM), Final Report", year = "2020", url = "https://publications.utah.edu/publications/Cin2020a/DREAM_Report-Project-final-with-authors.pdf", } @InProceedings{SCI:Han2020a, author = "M. Han and I. Wald and W. Usher and N. Morrical and A. Knoll and V. Pascucci and C.R. Johnson", title = "A virtual frame buffer abstraction for parallel rendering of large tiled display walls", booktitle = "2020 IEEE Visualization Conference (VIS)", pages = "11--15", year = "2020", url = "https://publications.utah.edu/publications/Han2020a/A_Virtual_Frame_Buffer_Abstraction_for_Parallel_Rendering_of_Large_Tiled_Display_Walls.pdf", } @Article{SCI:Jan2020a, author = "A. P. Janson and D. N. Anderson and C. R. Butson", title = "Activation robustness with directional leads and multi-lead configurations in deep brain stimulation", journal = "Journal of Neural Engineering", volume = "17", number = "2", pages = "026012", year = "2020", publisher = "IOP Publishing", month = "March", url = "https://publications.utah.edu/publications/Jan2020a/Janson_2020_J._Neural_Eng._17_026012.pdf", } @Article{SCI:Joh2020a, author = "C. R. Johnson and T. Kapur and W. Schroeder and and T. Yoo", title = "Remembering Bill Lorensen: The Man, the Myth, and Marching Cubes", journal = "IEEE Computer Graphics and Applications", volume = "40", number = "2", pages = "112-118", year = "2020", month = "March", url = "https://publications.utah.edu/publications/Joh2020a/IEEE Xplore Full-Text.pdf", } @Article{SCI:Joh2020b, author = "K. A. Johnson and G. Duffley and D. Nesterovich Anderson and J. L. Ostrem and M. Welter and J. C. Baldermann and J. Kuhn and D. Huys and V. Visser-Vandewalle and T. Foltynie and L. Zrinzo and M. Hariz and A. F. G. Leentjens and A. Y. Mogilner and M. H. Pourfar and L. Almeida and A. Gunduz and K. D. Foote and M. S. Okun and C. R. Butson", title = "Structural connectivity predicts clinical outcomes of deep brain stimulation for Tourette syndrome", journal = "Brain", year = "2020", month = "July", issn = "0006-8950", url = "https://publications.utah.edu/publications/Joh2020b/awaa188.pdf", } @Article{SCI:Kun2020a, author = "B. Kundu and T. S. Davis and B. Philip and E. H. Smith and A. Arain and A. Peters and B. Newman and C. R. Butson and J. D. Rolston", title = "A systematic exploration of parameters affecting evoked intracranial potentials in patients with epilepsy", journal = "Brain Stimulation", volume = "13", number = "5", pages = "1232-1244", year = "2020", url = "https://publications.utah.edu/publications/Kun2020a/1-s2.0-S1935861X20301200-main.pdf", } @Article{SCI:Ly2020a, author = "C. Ly and C. Vachet and I. Schwerdt and E. Abbott and A. Brenkmann and L.W. McDonald and T. Tasdizen", title = "Determining uranium ore concentrates and their calcination products via image classification of multiple magnifications", title_url = "https://doi.org/10.1016/j.jnucmat.2020.152082", journal = "Journal of Nuclear Materials", year = "2020", } @InProceedings{SCI:Mar2020a, author = "S. Zellmann and M. Aumüller and N. Marshak and I. Wald", title = "High-Quality Rendering of Glyphs Using Hardware-Accelerated Ray Tracing", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization (EGPGV)", year = "2020", publisher = "The Eurographics Association", url = "https://publications.utah.edu/publications/Mar2020a/069-073.pdf", } @Misc{SCI:Oue2020a, author = "T. A. J. Ouermi and R. M. Kirby and M. Berzins", title = "Numerical Testing of a New Positivity-Preserving Interpolation Algorithm", subtitle = "arXiv", year = "2020", url = "https://publications.utah.edu/publications/Oue2020a/report.pdf", } @TechReport{SCI:Pas2020a, author = "V. Pascucci and I. Altintas and J. Fortes and I. Foster and H. Gu and S. Hariri and D. Stanzione and M. Taufer and X. Zhao", title = "Report from the NSF Workshop on Smart Cyberinfrastructure 2020", year = "2020", institution = "NSF", url = "https://publications.utah.edu/publications/Pas2020a/UUSCI-2020-001.pdf", } @Article{SCI:Pon2020a, author = "S. P. Ponnapalli and M. W. Bradley and K. Devine and J. Bowen and S. E. Coppens and K. M. Leraas and B. A. Milash and F. Li and H. Luo and S. Qiu and K. Wu and H. Yang and C. T. Wittwer and C. A. Palmer and R. L. Jensen and J. M. Gastier-Foster and H. A. Hanson and J. S. Barnholtz-Sloan and O. Alter", title = "Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival", journal = "Applied Physics Letters (APL) Bioengineering", volume = "4", number = "2", year = "2020", month = "May", url = "https://publications.utah.edu/publications/Pon2020a/1.5142559.pdf", } @InProceedings{SCI:Sah2020a, author = "D. Sahasrabudhe and M. Berzins", title = "Improving Performance of the Hypre Iterative Solver for Uintah Combustion Codes on Manycore Architectures Using MPI Endpoints and Kernel Consolidation", booktitle = "Computational Science -- ICCS 2020, 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020, Proceedings, Part I", pages = "175--190", year = "2020", publisher = "Springer International Publishing", isbn = "978-3-030-50371-0", url = "https://publications.utah.edu/publications/Sah2020a/hypre.pdf", } @InProceedings{SCI:Sah2020b, author = "D. Sahasrabudhe and R. Zambre and A. Chandramowlishwaran and M. Berzins", title = "Optimizing the Hypre solver for manycore and GPU architectures", booktitle = "Journal of Computational Science", pages = "101279", year = "2020", publisher = "Springer International Publishing", isbn = "978-3-030-50371-0", issn = "1877-7503", url = "https://publications.utah.edu/publications/Sah2020b/00_main.pdf", } @InProceedings{SCI:Wan2020a, author = "F. Wang and N. Marshak and W. Usher and C. Burstedde and A. Knoll and T. Heister and C. R. Johnson", title = "CPU Ray Tracing of Tree-Based Adaptive Mesh Refinement Data", booktitle = "Eurographics Conference on Visualization (EuroVis) 2020", volume = "39", number = "3", year = "2020", url = "https://publications.utah.edu/publications/Wan2020a/cgf.13958.pdf", } @Article{SCI:Zho2020a, author = "L. Zhou and M. Rivinius and C. R. Johnson and and D. Weiskopf", title = "Photographic High-Dynamic-Range Scalar Visualization", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "26", number = "6", pages = "2156-2167", year = "2020", publisher = "IEEE", url = "https://publications.utah.edu/publications/Zho2020a/zhoul_pvis20_tvcg.pdf", } @Article{SCI:And2019a, author = "D.N. Anderson and G. Duffley and J. Vorwerk and A.D. Dorval and C.R. Butson", title = "Anodic stimulation misunderstood: preferential activation of fiber orientations with anodic waveforms in deep brain stimulation", journal = "Journal of Neural Engineering", volume = "16", number = "1", pages = "016026", year = "2019", publisher = "IOP Publishing", month = "Jan", url = "https://publications.utah.edu/publications/And2019a/Anderson_2019_J._Neural_Eng._16_016026.pdf", } @Article{SCI:And2019b, author = "C.J. Anderson and D.N. Anderson and S.M. Pulst and C.R. Butson and A.D. Dorval", title = "Neural Selectivity, Efficiency, and Dose Equivalence in Deep Brain Stimulation through Pulse Width Tuning and Segmented Electrodes", journal = "bioRxiv", year = "2019", publisher = "Cold Spring Harbor Laboratory", month = "April", url = "https://publications.utah.edu/publications/And2019b/613133.full.pdf", } @Article{SCI:And2019c, author = "D. N. Anderson and C. Anderson and N. Lanka and R. Sharma and C. R. Butson and B. W. Baker and A. D. Dorval", title = "The μDBS: Multiresolution, Directional Deep Brain Stimulation for Improved Targeting of Small Diameter Fibers", journal = "Frontiers in Neuroscience", volume = "13", year = "2019", month = "October", url = "https://publications.utah.edu/publications/And2019c/fnins-13-01152.pdf", } @Article{SCI:Aqu2019a, author = "C. C. Aquino and G. Duffley and D. M. Hedges and J. Vorwerk and P. A. House and H. B. Ferraz and J. D. Rolston and C. R. Butson and L. E. Schrock", title = "Interleaved deep brain stimulation for dyskinesia management in Parkinson's disease", journal = "Movement Disorders", year = "2019", url = "https://publications.utah.edu/publications/Aqu2019a/mds.27839.pdf", } @Article{SCI:Ath2019a, author = "T. Athawale and C. R. Johnson", title = "Probabilistic Asymptotic Decider for Topological Ambiguity Resolution in Level-Set Extraction for Uncertain 2D Data", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "25", number = "1", pages = "1163-1172", year = "2019", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Ath2019a/08440034.pdf", } @Article{SCI:Ath2019b, author = "T. M. Athawale and K. A. Johnson and C. R. Butson and C. R. Johnson", title = "A statistical framework for quantification and visualisation of positional uncertainty in deep brain stimulation electrodes", title_url = "https://www.tandfonline.com/doi/full/10.1080/21681163.2018.1523750", journal = "Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization", volume = "7", number = "4", pages = "438-449", year = "2019", publisher = "Taylor & Francis", url = "https://publications.utah.edu/publications/Ath2019b/127420419.pdf", } @Article{SCI:Atk2019a, author = "P. R. Atkins and Y. Shin and P. Agrawal and S. Y. Elhabian and R. T. Whitaker and J. A. Weiss and S. K. Aoki and C. L. Peters and A. E. Anderson", title = "Which Two-dimensional Radiographic Measurements of Cam Femoroacetabular Impingement Best Describe the Three-dimensional Shape of the Proximal Femur?", journal = "Clinical Orthopaedics and Related Research", volume = "477", number = "1", year = "2019", url = "https://publications.utah.edu/publications/Atk2019a/abjs-477-242.pdf", } @InProceedings{SCI:Ber2019a, author = "M. Berzins", title = "Time Integration Errors and Energy Conservation Properties of the Stormer Verlet Method Applied to MPM", booktitle = "Proceedings of VI International Conference on Particle-based Methods – Fundamentals and Applications", booktitle_url = "https://congress.cimne.com/particles2019/frontal/doc/Ebook_Particles_2019.pdf", pages = "555-566", year = "2019", editor = "E. O ̃ nate, M. Bischoff, D.R.J. Owen, P. Wriggers & T. Zohdi", organization = "PARTICLES 2019", month = "October", location = "Barcelona", isbn = "978-84-121101-1-1", url = "https://publications.utah.edu/publications/Ber2019a/Ebook_Particles_2019.pdf", } @InProceedings{SCI:Bha2019a, author = "R. Bhalodia and S. Y. Elhabian and L. Kavan and R. T. Whitaker", title = "A Cooperative Autoencoder for Population-Based Regularization of CNN Image Registration", booktitle = "Medical Image Computing and Computer Assisted Intervention -- MICCAI 2019", journal = "Medical Image Computing and Computer Assisted Intervention – MICCAI 2019", pages = "391--400", year = "2019", publisher = "Springer International Publishing", url = "https://publications.utah.edu/publications/Bha2019a/1908.05825.pdf", } @Article{SCI:Cla2019a, author = "D. Clark and K. Johnson and C. Butson and C. Lebel and D. Gobbi and R. Ramasubbu and Z. Kiss", title = "White matter tracts activated by successful subgenual cingulate deep brain stimulation", journal = "European Neuropsychopharmacology", volume = "29", pages = "S532--S533", year = "2019", publisher = "Elsevier", } @Article{SCI:Duf2019a, author = "G. Duffley and D. N. Anderson and J. Vorwerk and A. C. Dorval and C. R. Butson", title = "Evaluation of methodologies for computing the deep brain stimulation volume of tissue activated", journal = "Journal of Neural Engineering", year = "2019", month = "Aug", } @MastersThesis{SCI:Gop2019a, author = "Anupama Goparaju", title = "Evaluation and validation of off-the-shelf statistical shape modeling tools in clinical applications", year = "2019", school = "School of Computing, University of Utah", } @Article{SCI:Gyu2019a, author = "A. Gyulassy and P.-T. Bremer and V. Pascucci", title = "Shared-Memory Parallel Computation of Morse-Smale Complexes with Improved Accuracy", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "25", number = "1", pages = "1183--1192", year = "2019", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Gyu2019a/08440034.pdf", } @Article{SCI:Han2019a, author = "M. Han and I. Wald and W. Usher and Q. Wu and F. Wang and V. Pascicci and C. D. Hansen and C. R. Johnson", title = "Ray Tracing Generalized Tube Primitives: Method and Applications", journal = "Computer Graphics Forum", volume = "38", number = "3", year = "2019", publisher = "John Wiley & Sons Ltd.", url = "https://publications.utah.edu/publications/Han2019a/tubes-final.pdf", } @Article{SCI:Han2019b, author = "A. B. Hanson and R. N. Lee and C. Vachet and I. J. Schwerdt and T. Tasdizen and L. W. McDonald IV", title = "Quantifying Impurity Effects on the Surface Morphology of α-U3O8", title_url = "https://pubs.acs.org/doi/10.1021/acs.analchem.9b02013", journal = "Analytical Chemistry", year = "2019", } @Article{SCI:Hef2019a, author = "S. T. Heffernan and N. Ly and B. J. Mower and C. Vachet and I. J. Schwerdt and T. Tasdizen and L. W. McDonald IV", title = "Identifying surface morphological characteristics to differentiate between mixtures of U3O8 synthesized from ammonium diuranate and uranyl peroxide", title_url = "https://www.degruyter.com/view/j/ract.ahead-of-print/ract-2019-3140/ract-2019-3140.xml", journal = "Radiochimica Acta", year = "2019", } @Article{SCI:Hoa2019a, author = "D. Hoang and P. Klacansky and H. Bhatia and P.-T. Bremer and P. Lindstrom and V. Pascucci", title = "A Study of the Trade-off Between Reducing Precision and Reducing Resolution for Data Analysis and Visualization", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "25", number = "1", pages = "1193--1203", year = "2019", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Hoa2019a/08440822.pdf", } @TechReport{SCI:Hol2019a, author = "J. K. Holmen and B. Peterson and A. Humphrey and D. Sunderland and O. H. Diaz-Ibarra and J. N. Thornock and M. Berzins", title = "Portably Improving Uintah's Readiness for Exascale Systems Through the Use of Kokkos", year = "2019", institution = "SCI Institute", url = "https://publications.utah.edu/publications/Hol2019a/UUSCI-2019-001.pdf", } @InProceedings{SCI:Hol2019b, author = "J. K. Holmen and B. Peterson and M. Berzins", title = "An Approach for Indirectly Adopting a Performance Portability Layer in Large Legacy Codes", booktitle = "2nd International Workshop on Performance, Portability, and Productivity in HPC (P3HPC)", year = "2019", organization = "In conjunction with SC19", url = "https://publications.utah.edu/publications/Hol2019b/Holmenws_p3hpc115s2-file1-2.pdf", } @PhdThesis{SCI:Hum2019a, author = "Alan Humphrey", title = "Scalable Asynchronous Many-Task Runtime Solutions to Globally Coupled Problems", year = "2019", school = "School of Computing, University of Utah", url = "https://publications.utah.edu/publications/Hum2019a/AlanHumphrey_phd_thesis_FINAL_2019.pdf", } @InProceedings{SCI:Hum2019b, author = "A. Humphrey and M. Berzins", title = "An Evaluation of An Asynchronous Task Based Dataflow Approach For Uintah", booktitle = "2019 IEEE 43rd Annual Computer Software and Applications Conference (COMPSAC)", volume = "2", pages = "652-657", year = "2019", month = "July", issn = "0730-3157", url = "https://publications.utah.edu/publications/Hum2019b/dfm19_humphrey_berzins.pdf", } @Article{SCI:Joh2019a, author = "K. A. Johnson and P. T. Fletcher and D. Servello and A. Bona and M. Porta and J. L. Ostrem and E. Bardinet and M. Welter and A. M. Lozano and J. C. Baldermann and J. Kuhn and D. Huys and T. Foltynie and M. Hariz and E. M. Joyce and L. Zrinzo and Z. Kefalopoulou and J. Zhang and F. Meng and C. Zhang and Z. Ling and X. Xu and X. Yu and A. YJM Smeets and L. Ackermans and V. Visser-Vandewalle and A. Y. Mogilner and M. H. Pourfar and L. Almeida and A. Gunduz and W. Hu and K. D. Foote and M. S. Okun and C. R. Butson", title = "Image-based analysis and long-term clinical outcomes of deep brain stimulation for Tourette syndrome: a multisite study", journal = "Journal of Neurology, Neurosurgery & Psychiatry", year = "2019", publisher = "BMJ Publishing Group", url = "https://publications.utah.edu/publications/Joh2019a/jnnp-2019-320379.full.pdf", } @InProceedings{SCI:Lan2019a, author = "R.B. Lanfredi and J.D. Schroeder and C. Vachet and T. Tasdizen", title = "Adversarial regression training for visualizing the progression of chronic obstructive pulmonary disease with chest x-rays", title_url = "https://arxiv.org/pdf/1908.10468.pdf", booktitle = "International Conference on Medical Image Computing and Computer-Assisted Intervention", journal = "Arxiv", year = "2019", } @PhdThesis{SCI:Pet2019a, author = "B. Peterson", title = "Portable and Performant GPU/Heterogeneous Asynchronous Many-task Runtime System", subtitle = "Ph.D. Dissertation", year = "2019", school = "University of Utah, School of Computing", month = "Dec", url = "https://publications.utah.edu/publications/Pet2019a/bradpeterson-thesis.pdf", } @Article{SCI:Pra2019a, author = "A. Prakosa and H.J. Arevalo and D. Deng and P.M. Boyle and P.P. Nikolov and H. Ashikaga and J.E. Blauer and E. Ghafoori and C.J. Park and R.C. Blake III and F.T. Han and R.S. MacLeod and H.R. Halperin and D.J. Callans and R. Ranjan and J. Chrispin and S. Nazarian and and N.A. Trayanova", title = "Personalized Virtual-heart Technology for Guiding the Ablation of Infarct-related Ventricular Tachycardia", title_url = "https://www.nature.com/articles/s41551-018-0282-2", journal = "Nature Biomedical Engineering", volume = "2", pages = "732–740", year = "2019", } @Article{SCI:Sah2019a, author = "D. Sahasrabudhe and M. Berzins and J. Schmidt", title = "Node failure resiliency for Uintah without checkpointing", journal = "Concurrency and Computation: Practice and Experience", pages = "e5340", year = "2019", url = "https://publications.utah.edu/publications/Sah2019a/00_Uintah_Resiliency.pdf", } @InProceedings{SCI:Sah2019b, author = "D. Sahasrabudhe and E. T. Phipps and S. Rajamanickam and M. Berzins", title = "A Portable SIMD Primitive using Kokkos for Heterogeneous Architectures", booktitle = "Sixth Workshop on Accelerator Programming Using Directives (WACCPD)", year = "2019", url = "https://publications.utah.edu/publications/Sah2019b/portable_simd.pdf", } @InProceedings{SCI:San2019a, author = "A. Sanderson and A. Humphrey and J. Schmidt and R. Sisneros and and M. Papka", title = " In situ visualization of performance metrics in multiple domains", booktitle = "2019 IEEE/ACM International Workshop on Programming and Performance Visualization Tools (ProTools)", year = "2019", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/San2019a/Sanderson_SC_ProTools19.pdf", } @Article{SCI:Smi2019a, author = "G. S. Smith and K. A. Mills and G. M. Pontone and W. S. Anderson and K. M. Perepezko and J. Brasic and Y. Zhou and J. Brandt and C. R. Butson and D. P. Holt and W. B. Mathews and R. F. Dannals and D. F. Wong and Z. Mari", title = "Effect of STN DBS on vesicular monoamine transporter 2 and glucose metabolism in Parkinson's disease", journal = "Parkinsonism and Related Disorders", year = "2019", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Smi2019a/1-s2.0-S1353802019302019-main.pdf", } @InProceedings{SCI:Tra2019a, author = "Q. Tran and M. Berzins and W. Solowski", title = "An improved moving least squares method for the Material Point Method", booktitle = "Proceedings of the 2nd International Conference on the Material Point Method for Modelling Soil-Water-Structure Interaction (MPM 2019)", year = "2019", url = "https://publications.utah.edu/publications/Tra2019a/2019 -MPM2019 Tran et al. - IMLS.pdf", } @Article{SCI:Tra2019b, author = "Q. A. Tran and W. Sołowski and M. Berzins and J. Guilkey", title = "A convected particle least square interpolation material point method", journal = "International Journal for Numerical Methods in Engineering", year = "2019", publisher = "Wiley", month = "October", url = "https://publications.utah.edu/publications/Tra2019b/QATRAN_IJNMF_Manuscript.pdf", } @Article{SCI:Ush2019a, author = "W. Usher and I. Wald and J. Amstutz and J. Gunther and C. Brownlee and V. Pascucci", title = "Scalable Ray Tracing Using the Distributed FrameBuffer", journal = "Eurographics Conference on Visualization (EuroVis) 2019", volume = "38", number = "3", year = "2019", url = "https://publications.utah.edu/publications/Ush2019a/dfb.pdf", } @Article{SCI:Vor2019a, author = "J. Vorwerk and A. Brock and D.N. Anderson and J.D. Rolston and C.R. Butson", title = "A Retrospective Evaluation of Automated Optimization of Deep Brain Stimulation Settings", title_url = "https://www.brainstimjrnl.com/article/S1935-861X(18)30585-0/fulltext", journal = "Brain Stimulation", volume = "12", number = "2", pages = "e54--e55", year = "2019", publisher = "Elsevier", month = "March", } @Article{SCI:Vor2019b, author = "J. Vorwerk and Ü. Aydin and C.H. Wolters and C.R. Butson", title = "Influence of head tissue conductivity uncertainties on EEG dipole reconstruction", title_url = "https://www.frontiersin.org/articles/10.3389/fnins.2019.00531/abstract", journal = "Frontiers in Neuroscience", year = "2019", } @Article{SCI:Vor2019c, author = "J. Vorwerk and A. Brock and D.N. Anderson and J.D. Rolston and C.R. Butson", title = "A retrospective evaluation of automated optimization of deep brain stimulation parameters", journal = "Journal of Neural Engineering", year = "2019", url = "https://publications.utah.edu/publications/Vor2019c/Vorwerk_J_Neural_Eng.pdf", } @Article{SCI:Vor2019d, author = "J. Vorwerk and D. McCann and J. Krüger and C.R. Butson", title = "Interactive computation and visualization of deep brain stimulation effects using Duality", title_url = "https://www.tandfonline.com/doi/abs/10.1080/21681163.2018.1484817", journal = "Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization", year = "2019", publisher = "Taylor & Francis", } @Article{SCI:Wan2019a, author = "F. Wang and I. Wald and Q. Wu and W. Usher and C. R. Johnson", title = "CPU Isosurface Ray Tracing of Adaptive Mesh Refinement Data", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "25", number = "1", pages = "1142-1151", year = "2019", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Wan2019a/08493612.pdf", } @InProceedings{SCI:Wan2019b, author = "F. Wang and I. Wald and and C.R. Johnson", title = "Interactive Rendering of Large-Scale Volumes on Multi-Core CPUs ", booktitle = "2019 IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV)", pages = "27--36", year = "2019", url = "https://publications.utah.edu/publications/Wan2019b/bricktree-LDAV.pdf", } @Article{SCI:War2019a, author = "A. Warner and J. Tate and B. Burton and and C.R. Johnson", title = "A High-Resolution Head and Brain Computer Model for Forward and Inverse EEG Simulation", journal = "bioRxiv", year = "2019", publisher = "Cold Spring Harbor Laboratory", month = "Feb", url = "https://publications.utah.edu/publications/War2019a/552190.full.pdf", } @Article{SCI:Zho2019a, author = "L. Zhou and D. Weiskopf and C. R. 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Kirby", title = "Uncertainty quantification guided robust design for nanoparticles' morphology", journal = "Computer Methods in Applied Mechanics and Engineering", pages = "578--593", year = "2018", publisher = "Elsevier BV", month = "July", url = "https://publications.utah.edu/publications/He2018a/1-s2.0-S0045782518301518-main.pdf", } @Article{SCI:Jal2018a, author = "A. Jallepalli and J. Docampo-Sánchez and J.K. Ryan and R. Haimes and R.M. Kirby", title = "On the treatment of field quantities and elemental continuity in fem solutions", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "24", number = "1", pages = "903--912", year = "2018", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Jal2018a/08017592.pdf", } @Article{SCI:Jan2018a, author = "A. Janson and C. 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Bedrov", title = "Fast predictive models based on multi-fidelity sampling of properties in molecular dynamics simulations", journal = "Computational Materials Science", volume = "152", pages = "125--133", year = "2018", publisher = "Elsevier BV", month = "September", url = "https://publications.utah.edu/publications/Raz2018a/1-s2.0-S0927025618303367-main.pdf", } @Article{SCI:Reb2018a, author = "M. Reblin and D. Ketcher and P. Forsyth and E. Mendivil and L. Kane and J. Pok and M. Meyer and Y.Wu and J. Agutter", title = "Outcomes of an electronic social network intervention with neuro-oncology patient family caregivers", journal = "Journal of Neuro-Oncology", pages = "1--7", year = "2018", publisher = "Springer Nature", month = "May", url = "https://publications.utah.edu/publications/Reb2018a/s11060-018-2909-2.pdf", } @Article{SCI:Rod2018a, author = "A. Rodenhauser and W.W. Good and B. Zenger and J. Tate and K. Aras and B. Burton and R.S. Macleod", title = "PFEIFER: Preprocessing Framework for Electrograms Intermittently Fiducialized from Experimental Recordings", journal = "The Journal of Open Source Software", volume = "3", number = "21", pages = "472", year = "2018", publisher = "The Open Journal", month = "Jan", url = "https://publications.utah.edu/publications/Rod2018a/10.21105.joss.00472.pdf", } @Article{SCI:Rue2018a, author = "U. Ruede and K. Willcox and L. C. McInnes and H. De Sterck and G. Biros and H. Bungartz and J. Corones and E. Cramer and J. Crowley and O. Ghattas and M. Gunzburger and M. Hanke and R. Harrison and M. Heroux and J. Hesthaven and P. Jimack and C. R. Johnson and K. E. Jordan and D. E. Keyes and R. Krause and V. Kumar and S. Mayer and J. Meza and K. M. Mrken and J. T. Oden and L. Petzold and P. Raghavan and S. M. Shontz and A. Trefethen and P. Turner and V. Voevodin and B. Wohlmuth and and C. S. 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Tricoche", title = "Exploration of periodic flow fields", booktitle = "18th International Symposium on Flow Visualization", year = "2018", url = "https://publications.utah.edu/publications/San2018b/ISFV18_PeriodicFlowFields.pdf", } @Article{SCI:Sch2018a, author = "I. .J Schwerdt and A. Brenkmann and S. Martinson and B. D. Albrecht and S. Heffernan and M. R. Klosterman and T. Kirkham and T. Tasdizen and L. W. McDonald IV", title = "Nuclear proliferomics: A new field of study to identify signatures of nuclear materials as demonstrated on alpha-UO3", journal = "Talanta", volume = "186", pages = "433--444", year = "2018", publisher = "Elsevier BV", month = "Aug", url = "https://publications.utah.edu/publications/Sch2018a/1-s2.0-S0039914018304508-main.pdf", } @Article{SCI:Sum2018a, author = "B. Summa and N. Faraj and C. Licorish and V. Pascucci", title = "Flexible Live‐Wire: Image Segmentation with Floating Anchors", journal = "Computer Graphics Forum", volume = "37", number = "2", pages = "321-328", year = "2018", publisher = "Wiley", month = "May", url = "https://publications.utah.edu/publications/Sum2018a/Summa_et_al-2018-Computer_Graphics_Forum.pdf", } @InProceedings{SCI:Tas2018a, author = "T. Tasdizen and M. Sajjadi and M. Javanmardi and N. Ramesh", title = "Improving the robustness of convolutional networks to appearance variability in biomedical images", booktitle = "2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)", year = "2018", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Tas2018a/08363636.pdf", } @Article{SCI:Tho2018a, author = "S. Thomas and J. Silvernagel and N. Angel and E. Kholmovski and E. Ghafoori and N. Hu and J. Ashton and D.J. Dosdall and R.S. MacLeod and R. Ranjan", title = "Higher contact force during radiofrequency ablation leads to a much larger increase in edema as compared to chronic lesion size", journal = "Journal of Cardiovascular Electrophysiology", year = "2018", publisher = "Wiley", month = "June", url = "https://publications.utah.edu/publications/Tho2018a/Thomas_et_al-2018-Journal_of_Cardiovascular_Electrophysiology.pdf", } @Article{SCI:Tod2018a, author = "J.N. Todd and T.G. Maak and G.A. Ateshian and S.A. Maas and J.A. Weiss", title = "Hip chondrolabral mechanics during activities of daily living: Role of the labrum and interstitial fluid pressurization", journal = "Journal of Biomechanics", volume = "69", pages = "113--120", year = "2018", publisher = "Elsevier BV", month = "March", url = "https://publications.utah.edu/publications/Tod2018a/PIIS0021929018300113.pdf", } @Article{SCI:Tu2018a, author = "L. Tu and M. Styner and J. Vicory and S. Elhabian and R. Wang and J. Hong and B. Paniagua and J.C. Prieto and D. Yang and R. Whitaker and M. Pizer", title = "Skeletal Shape Correspondence through Entropy", journal = "IEEE Transactions on Medical Imaging", volume = "37", number = "1", pages = "1--11", year = "2018", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Tu2018a/08048024.pdf", } @Article{SCI:Ush2018a, author = "W Usher and P Klacansky and F Federer and PT Bremer and A Knoll and J. Yarch and A. Angelucci and V. Pascucci ", title = "A virtual reality visualization tool for neuron tracing", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "24", number = "1", pages = "994--1003", year = "2018", publisher = "IEEE", month = "Jan", url = "https://publications.utah.edu/publications/Ush2018a/nihms919599.pdf", } @InProceedings{SCI:Ush2018b, author = "W. Usher and S. Rizzi and I. Wald and J. Amstutz and J. Insley and V. Vishwanath and N. Ferrier and M. E. Papka and and V. Pascucci", title = "libIS: A Lightweight Library for Flexible In Transit Visualization", booktitle = "Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization", year = "2018", publisher = "ACM Press", url = "https://publications.utah.edu/publications/Ush2018b/libis-isav18.pdf", } @Article{SCI:Wan2018a, author = "F. Wang and W. Li and S. Wang and C.R. Johnson", title = "Association Rules-Based Multivariate Analysis and Visualization of Spatiotemporal Climate Data", journal = "ISPRS International Journal of Geo-Information", volume = "7", number = "7", pages = "266", year = "2018", publisher = "MDPI AG", month = "July", url = "https://publications.utah.edu/publications/Wan2018a/Geo-Information-Vis-2018.pdf", } @Article{SCI:Xio2018a, author = "Z. Xiong and V. V. Fedorov and X. Fu and E. Cheng and R. Macleod and J. Zhao", title = "Fully Automatic Left Atrium Segmentation from Late Gadolinium Enhanced Magnetic Resonance Imaging Using a Dual Fully Convolutional Neural Network", journal = "IEEE Transactions on Medical Imaging", pages = "1--1", year = "2018", publisher = "IEEE", url = "https://publications.utah.edu/publications/Xio2018a/xiong-2018.pdf", } @InProceedings{SCI:Yan2018a, author = "Z. Yang and D. Sahasrabudhe and A. Humphrey and M. Berzins", title = "A Preliminary Port and Evaluation of the Uintah AMT Runtime on Sunway TaihuLight", booktitle = "9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018)", year = "2018", publisher = "IEEE", month = "May", url = "https://publications.utah.edu/publications/Yan2018a/Uintah-Sunway.pdf", } @Book{SCI:Yu2018a, author = "Y. Yu and R.M. Kirby and G.E. Karniadakis", title = "Spectral Element and hp Methods", title_url = "https://onlinelibrary.wiley.com/doi/abs/10.1002/9781119176817.ecm2052", booktitle = "Encyclopedia of Computational Mechanics Second Edition", pages = "1--43", year = "2018", publisher = "John Wiley & Sons, Ltd", } @Article{SCI:Yu2018b, author = "Y.Y. Yu and S.Y. Elhabian and R.T. Whitaker", title = "Clustering With Pairwise Relationships: A Generative Approach", journal = "CoRR", year = "2018", url = "https://publications.utah.edu/publications/Yu2018b/1805.02285.pdf", } @Article{SCI:Zal2018a, author = "V. Zala and V. Shankar and S.P. Sastry and R.M. Kirby", title = "Curvilinear Mesh Adaptation Using Radial Basis Function Interpolation and Smoothing", journal = "Journal of Scientific Computing", pages = "1--22", year = "2018", publisher = "Springer Nature", month = "April", url = "https://publications.utah.edu/publications/Zal2018a/s10915-018-0711-0.pdf", } @Article{SCI:Zit2018a, author = "J.L. Zitnay and S.P. Reese and G. Tran and N. Farhang and R.D. Bowles and J.A. Weiss", title = "Fabrication of dense anisotropic collagen scaffolds using biaxial compression", journal = "Acta Biomaterialia", volume = "65", pages = "76--87", year = "2018", publisher = "Elsevier BV", month = "Jan", url = "https://publications.utah.edu/publications/Zit2018a/1-s2.0-S1742706117307018-main.pdf", } @Article{SCI:Ada2017a, author = "M. Adamaszek and H. Adams and E. Gasparovic and M. Gommel and E. Purvine and R. Sazdanovic and B. Wang and Y. Wang and L. Ziegelmeier", title = "Vietoris-Rips and Cech Complexes of Metric Gluings", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Ada2017a/1712.06224.pdf", } @Unpublished{SCI:Ber2017a, author = "M. Berzins and D. A. Bonnell and Jr. Cizewski and K. M. Heeger and A.J.G. Hey and C. J. Keane and B. A. Ramsey and K. A. Remington and J.L. Rempe", title = "Department of Energy, Advanced Scientific Computing Advisory Committee (ASCAC), Subcommittee on LDRD Review Final Report", year = "2017", month = "May", url = "https://publications.utah.edu/publications/Ber2017a/REPORTLDRDMay09.pdf", } @InProceedings{SCI:Ber2017b, author = "M. Berzins", title = "Nonlinear Stability of the MPM Method", booktitle = "V International Conference on Particle-based Methods – Fundamentals and Applications. PARTICLES 2017", booktitle_url = "http://congress.cimne.com/particles2017/frontal/doc/Ebook%20PARTICLES%202017.pdf", pages = "671--682", year = "2017", editor = "P. Wriggers, M. Bischoff, E. O˜nate, D.R.J. Owen, & T. Zohdi", url = "https://publications.utah.edu/publications/Ber2017b/mpmstabParticles.pdf", } @Article{SCI:Bha2017a, author = "A. Bhaduri and Y. He and M.D. Shields and L. Graham-Brady and R.M. Kirby", title = "Stochastic collocation approach with adaptive mesh refinement for parametric uncertainty analysis", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Bha2017a/1709.04584.pdf", } @InProceedings{SCI:Bha2017b, author = "A. Bhatele and J. Yeom and N. Jain and C. J. Kuhlman and Y. Livnat and K. R. Bisset and L. V. Kale and M. V. Marathe", title = "Massively Parallel Simulations of Spread of Infectious Diseases over Realistic Social Networks", booktitle = "2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)", year = "2017", month = "May", url = "https://publications.utah.edu/publications/Bha2017b/ccgrid2017a.pdf", } @Article{SCI:Bos2017a, author = "L. Bos and A. Narayan and N. Levenberg and F. Piazzon", title = "An Orthogonality Property of the Legendre Polynomials", journal = "Constructive Approximation", volume = "45", number = "1", pages = "65--81", year = "2017", month = "Feb", issn = "0176-4276, 1432-0940", url = "https://publications.utah.edu/publications/Bos2017a/1505.06635.pdf", } @Article{SCI:Bro2017a, author = "A. Brown and B. Wang", title = "Sheaf-Theoretic Stratification Learning", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Bro2017a/1712.07734.pdf", } @Article{SCI:Cat2017a, author = "J. Cates and L. Nevell and S. I. Prajapati and L. D. Nelon and J. Y. Chang and M. E. Randolph and B. Wood and C. Keller and R. T. Whitaker", title = "Shape analysis of the basioccipital bone in Pax7-deficient mice", journal = "Scientific Reports", volume = "7", number = "1", year = "2017", publisher = "Springer Nature", month = "Dec", url = "https://publications.utah.edu/publications/Cat2017a/Cates_et_al-2017-Scientific_Reports.pdf", } @Article{SCI:Che2017b, author = "M. Chen and G. Grinstein and C. R. Johnson and J. Kennedy and M. Tory", title = "Pathways for Theoretical Advances in Visualization", journal = "IEEE Computer Graphics and Applications", pages = "103--112", year = "2017", publisher = "IEEE", month = "July", url = "https://publications.utah.edu/publications/Che2017b/Theoretical-Advances-Visualization-2017.pdf", } @Article{SCI:Doc2017a, author = "J. Docampo-Sánchez and J.K. Ryan and M. Mirzargar and R.M. Kirby", title = "Multi-Dimensional Filtering: Reducing the Dimension Through Rotation Read More: https://epubs.siam.org/doi/abs/10.1137/16M1097845", journal = "SIAM Journal on Scientific Computing", volume = "39", number = "5", pages = "A2179--A2200", year = "2017", publisher = "SIAM", month = "Jan", url = "https://publications.utah.edu/publications/Doc2017a/16m1097845.pdf", } @Article{SCI:Erd2017a, author = "E. Erdil and M.U. Ghani and L. Rada and A.O. Argunsah and D. Unay and T. Tasdizen and M. Cetin", title = "Nonparametric joint shape and feature priors for image segmentation", journal = "IEEE Transactions on Image Processing", volume = "26", number = "11", pages = "5312--5323", year = "2017", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/Erd2017a/07982806.pdf", } @Article{SCI:Fei2017a, author = "M. Feiszli and A. Narayan", title = "Numerical Computation of Weil-Peterson Geodesics in the Universal Teichmueller Space", journal = "SIAM Journal on Imaging Sciences", volume = "10", number = "3", pages = "1322--1345", year = "2017", publisher = "SIAM", month = "Jan", url = "https://publications.utah.edu/publications/Fei2017a/1307.2358.pdf", } @InCollection{SCI:Foo2017a, author = "M. Foote and P. Sabouri and A. Sawant and S. Joshi", title = "Rank Constrained Diffeomorphic Density Motion Estimation for Respiratory Correlated Computed Tomography", title_url = "https://link.springer.com/chapter/10.1007/978-3-319-67675-3_16", booktitle = "Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics", pages = "177--185", year = "2017", publisher = "Springer International Publishing", } @Article{SCI:Fur2017a, author = "K. Furmanova and S. Gratzl and H. Stitz and T. Zichner and M. Jaresova and M. Ennemoser and A. Lex and M. Streit", title = "Taggle: Scalable Visualization of Tabular Data through Aggregation", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Fur2017a/1712.05944.pdf", } @Article{SCI:Gha2017a, author = "E. Ghafoori and E.G. Kholmovski and S. Thomas and J. Silvernagel and N. Angel and N. Hu and D.J. Dosdall and R.s. MacLeod and R. Ranjan", title = "Characterization of Gadolinium Contrast Enhancement of Radiofrequency Ablation Lesions in Predicting Edema and Chronic Lesion Size", journal = "Circulation: Arrhythmia and Electrophysiology", volume = "10", number = "11", pages = "e005599", year = "2017", publisher = "Ovid Technologies (Wolters Kluwer Health)", month = "Oct", url = "https://publications.utah.edu/publications/Gha2017a/e005599.full.pdf", } @Article{SCI:Ghi2017a, author = "S. Ghimire and J. Dhamala and J. Coll-Font and J. D. Tate and M. S. Guillem and D. H. Brooks and R. S. MacLeod and L. Wang", title = "Overcoming Barriers to Quantification and Comparison of Electrocardiographic Imaging Methods: A Community-Based Approach", journal = "Computing in Cardiology", volume = "44", year = "2017", url = "https://publications.utah.edu/publications/Ghi2017a/370-289.pdf", } @InProceedings{SCI:Gil2017a, author = "T. Gilray and S. Kumar", title = "Toward parallel CFA with datalog, MPI, and CUDA", booktitle = "Scheme and Functional Programming Workshop", year = "2017", url = "https://publications.utah.edu/publications/Gil2017a/Scheme.pdf", } @Article{SCI:Goo2017a, author = "W. W. Good and B. Erem and J. Coll-Font and D. H. Brooks and R. S. MacLeod", title = "Detecting Ischemic Stress to the Myocardium Using Laplacian Eigenmaps and Changes to Conduction Velocity", journal = "Computing in Cardiology", volume = "44", year = "2017", publisher = "IEEE", url = "https://publications.utah.edu/publications/Goo2017a/269-417.pdf", } @Article{SCI:Gri2017b, author = "C. Gritton and J. Guilkey and J. Hooper and D. Bedrov and R. M. Kirby and M. Berzins", title = "Using the material point method to model chemical/mechanical coupling in the deformation of a silicon anode", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "25", number = "4", pages = "045005", year = "2017", url = "https://publications.utah.edu/publications/Gri2017b/mpm_nanopillar.pdf", } @Article{SCI:Guo2017a, author = "L. Guo and A. Narayan and T. Zhou and Y. Chen", title = "Stochastic Collocation Methods via L1 Minimization Using Randomized Quadratures", journal = "SIAM Journal on Scientific Computing", volume = "39", number = "1", pages = "A333--A359", year = "2017", month = "Jan", issn = "1064-8275", url = "https://publications.utah.edu/publications/Guo2017a/1602.00995.pdf", } @InProceedings{SCI:Hol2017b, author = "J. K. Holmen and A. Humphrey and D. Sutherland and M. Berzins", title = "Improving Uintah's Scalability Through the Use of Portable Kokkos-Based Data Parallel Tasks", booktitle = "Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact", number = "27", pages = "27:1--27:8", year = "2017", series = "PEARC17", isbn = "978-1-4503-5272-7", url = "https://publications.utah.edu/publications/Hol2017b/pearc17.pdf", } @Article{SCI:Jak2017a, author = "J. Jakeman and A. Narayan and T. Zhou", title = "A Generalized Sampling and Preconditioning Scheme for Sparse Approximation of Polynomial Chaos Expansions", journal = "SIAM Journal on Scientific Computing", volume = "39", number = "3", pages = "A1114--A1144", year = "2017", publisher = "SIAM", month = "Jan", issn = "1064-8275", url = "https://publications.utah.edu/publications/Jak2017a/1602.06879.pdf", } @Article{SCI:Jia2017b, author = "J. Jiang and Y. Chen and A. Narayan", title = "Offline-Enhanced Reduced Basis Method Through Adaptive Construction of the Surrogate Training Set", journal = "Journal of Scientific Computing", volume = "73", number = "2-3", pages = "853--875", year = "2017", publisher = "Springer Nature", month = "September", url = "https://publications.utah.edu/publications/Jia2017b/s10915-017-0551-3.pdf", } @Article{SCI:Ker2017a, author = "M. Kern and A. Lex and N. Gehlenborg and C. R. Johnson", title = "Interactive Visual Exploration And Refinement Of Cluster Assignments", journal = "BMC Bioinformatics", year = "2017", publisher = "Cold Spring Harbor Laboratory", month = "April", url = "https://publications.utah.edu/publications/Ker2017a/document-kern.pdf", } @InProceedings{SCI:Kum2017a, author = "S. Kumar and D. Hoang and S. Petruzza and J. Edwards and V. Pascucci", title = "Reducing Network Congestion and Synchronization Overhead During Aggregation of Hierarchical Data", booktitle = "2017 IEEE 24th International Conference on High Performance Computing (HiPC)", pages = "223-232", year = "2017", month = "Dec", url = "https://publications.utah.edu/publications/Kum2017a/HiPC_2017_IEEE.pdf", } @InProceedings{SCI:Kum2017b, author = "S. Kumar and D. Hoang and S. Petruzza and J. Edwards and V. Pascucci", title = "Reducing network congestion and synchronization overhead during aggregation of hierarchical data", title_url = "https://www.semanticscholar.org/paper/Reducing-Network-Congestion-and-Synchronization-of-Kumar-Hoang/04f0650ab41af3aad8c0476a9b06826c55356b99", booktitle = "2017 IEEE 24th International Conference on High Performance Computing (HiPC)", year = "2017", publisher = "IEEE", month = "Dec", url = "https://publications.utah.edu/publications/Kum2017b/08287753.pdf", } @Article{SCI:Mck2017a, author = "S. McKenna and A. Lex and M. Meyer", title = "Worksheets for Guiding Novices through the Visualization Design Process", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Mck2017a/1709.05723.pdf", } @Article{SCI:Mir2017a, author = "M. Mirzargar and A. Jallepalli and J.K. Ryan and R.M. Kirby", title = "Hexagonal Smoothness-Increasing Accuracy-Conserving Filtering", journal = "Journal of Scientific Computing", volume = "73", number = "2-3", pages = "1072--1093", year = "2017", publisher = "Springer Nature", month = "Aug", url = "https://publications.utah.edu/publications/Mir2017a/Mirzargar2017_Article_HexagonalSmoothness-Increasing.pdf", } @Article{SCI:Mir2017b, author = "M. Mirzargar and R.T. Whitaker and R.M. Kirby", title = "Exploration of Heterogeneous Data Using Robust Similarity", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Mir2017b/1710.02862.pdf", } @Article{SCI:Nar2017a, author = "A. Narayan and J. Jakeman and T. Zhou", title = "A Christoffel function weighted least squares algorithm for collocation approximations", journal = "Mathematics of Computation", volume = "86", number = "306", pages = "1913--1947", year = "2017", issn = "0025-5718, 1088-6842", url = "https://publications.utah.edu/publications/Nar2017a/1412.4305.pdf", } @InProceedings{SCI:Oue2017b, author = "T.A.J. Ouermi and A. Knoll and R.M. Kirby and M. Berzins", title = "OpenMP 4 Fortran Modernization of WSM6 for KNL", booktitle = "Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact", number = "12", pages = "12:1--12:8", year = "2017", series = "PEARC17", publisher = "ACM", isbn = "978-1-4503-5272-7", url = "https://publications.utah.edu/publications/Oue2017b/a12-Ouermi.pdf", } @InProceedings{SCI:Oue2017c, author = "T.A.J. Ouermi and A. Knoll and R.M. Kirby and M. Berzins", title = "Optimization Strategies for WRF Single-Moment 6-Class Microphysics Scheme (WSM6) on Intel Microarchitectures", booktitle = "Proceedings of the fifth international symposium on computing and networking (CANDAR 17). Awarded Best Paper ", year = "2017", publisher = "IEEE", url = "https://publications.utah.edu/publications/Oue2017c/bare_conf.pdf", } @InProceedings{SCI:Pal2017a, author = "S. Palande and V. Jose and B. Zielinski and J. Anderson and P.T. Fletcher and B. Wang", title = "Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference", title_url = "https://link.springer.com/chapter/10.1007/978-3-319-67159-8_12", booktitle = "Connectomics in NeuroImaging", pages = "98--107", year = "2017", publisher = "Springer International Publishing", } @InProceedings{SCI:Pet2017a, author = "B. Peterson and A. Humphrey and J. Schmidt and M. Berzins", title = "Addressing Global Data Dependencies in Heterogeneous Asynchronous Runtime Systems on GPUs. Awarded Best Paper", booktitle = "Proceedings of the Third International Workshop on Extreme Scale Programming Models and Middleware - ESPM2'17", year = "2017", publisher = "ACM", url = "https://publications.utah.edu/publications/Pet2017a/a1-peterson.pdf", } @InProceedings{SCI:Pet2017b, author = "S. Petruzza and A. Venkat and A. Gyulassy and G. Scorzelli and F. Federer and A. Angelucci and V. Pascucci and P. T. Bremer", title = "ISAVS: Interactive Scalable Analysis and Visualization System", booktitle = "ACM SIGGRAPH Asia 2017 Symposium on Visualization", year = "2017", publisher = "ACM Press", url = "https://publications.utah.edu/publications/Pet2017b/ISAVS_Interactive_Scalable_Analysis_and_Visualizat.pdf", } @Article{SCI:Rau2017a, author = "M. Rautenhaus and M. Böttinger and S. Siemen and R. Hoffman and R.M. Kirby and M. Mirzargar and N. Rober and R. Westermann", title = "Visualization in Meteorology---A Survey of Techniques and Tools for Data Analysis Tasks", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "1--1", year = "2017", publisher = "IEEE", url = "https://publications.utah.edu/publications/Rau2017a/286c33cb985b759cef6df8cd5568f430a49d.pdf", } @Article{SCI:Ses2017a, author = "P. Seshadri and A. Narayan and S. Mahadevan", title = "Effectively Subsampled Quadratures for Least Squares Polynomial Approximations", journal = "SIAM/ASA Journal on Uncertainty Quantification", pages = "1003--1023", year = "2017", month = "Jan", url = "https://publications.utah.edu/publications/Ses2017a/1601.05470.pdf", } @Article{SCI:Sod2017a, author = "T. Sodergren and J. Hair and J.M. Phillips and B. Wang", title = "Visualizing Sensor Network Coverage with Location Uncertainty", journal = "CoRR", volume = "abs/1710.06925", year = "2017", url = "https://publications.utah.edu/publications/Sod2017a/1710.06925.pdf", } @Article{SCI:Suh2017a, author = "A. Suh and M. Hajij and B. Wang and C. Scheidegger and P. Rosen", title = "Driving Interactive Graph Exploration Using 0-Dimensional Persistent Homology Features", journal = "CoRR", year = "2017", url = "https://publications.utah.edu/publications/Suh2017a/1712.05548b.pdf", } @Article{SCI:Tat2017a, author = "J. Tate and K. Gillette and B. Burton and W. Good and J. Coll-Font and D. Brooks and R. MacLeod", title = "Analyzing Source Sampling to Reduce Error in ECG Forward Simulations", journal = "Computing in Cardiology", volume = "44", year = "2017", url = "https://publications.utah.edu/publications/Tat2017a/371-097.pdf", } @Article{SCI:The2017a, author = "W.Thevathasan and B. Debu and T. Aziz and B. R. Bloem and C. Blahak and C. Butson and V. Czernecki and T. Foltynie and V. Fraix and D. Grabli and C. Joint and A. M. Lozano and M. S. Okun and J. Ostrem and N. Pavese and C. Schrader and C. H. Tai and J. K. Krauss and E. Moro", title = "Pedunculopontine nucleus deep brain stimulation in Parkinson's disease: A clinical review", journal = "Movement Disorders", volume = "33", number = "1", pages = "10--20", year = "2017", issn = "1531-8257", url = "https://publications.utah.edu/publications/The2017a/Thevathasan_et_al-2018-Movement_Disorders.pdf", } @InProceedings{SCI:Ush2017b, author = "W. Usher and J. Amstutz and C. Brownlee and A. Knoll and I. Wald ", title = "Progressive CPU Volume Rendering with Sample Accumulation", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization", year = "2017", editor = "Alexandru Telea and Janine Bennett", publisher = "The Eurographics Association", isbn = "978-3-03868-034-5", issn = "1727-348X", url = "https://publications.utah.edu/publications/Ush2017b/savr.pdf", } @Article{SCI:Ush2017c, author = "W. Usher and P. Klacansky and F. Federer and P. T. Bremer and A. Knoll and J. Yarch and A. Angelucci and V. Pascucci", title = "A Virtual Reality Visualization Tool for Neuron Tracing", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2017", publisher = "IEEE", issn = "1077-2626", url = "https://publications.utah.edu/publications/Ush2017c/vr-neuron-tracing-2.pdf", } @InCollection{SCI:Var2017a, author = "A. Vardhan and J. Fishbaugh and C. Vachet and G. Gerig", title = "Longitudinal Modeling of Multi-modal Image Contrast Reveals Patterns of Early Brain Growth", title_url = "https://link.springer.com/chapter/10.1007%2F978-3-319-66182-7_9", booktitle = "Medical Image Computing and Computer Assisted Intervention - MICCAI 2017", pages = "75--83", year = "2017", publisher = "Springer International Publishing", } @InProceedings{SCI:Wal2017a, author = "I. Wald and C. Brownlee and W. Usher and A. Knoll", title = "CPU Volume Rendering of Adaptive Mesh Refinement Data", booktitle = "ACM SIGGRAPH Asia 2017 Symposium on Visualization", year = "2017", publisher = "ACM Press", url = "https://publications.utah.edu/publications/Wal2017a/cvamr.pdf", } @Article{SCI:Wan2017d, author = "Y. Wan and C. Hansen", title = "Uncertainty Footprint: Visualization of Nonuniform Behavior of Iterative Algorithms Applied to 4D Cell Tracking", journal = "Computer Graphics Forum", year = "2017", publisher = "Wiley", url = "https://publications.utah.edu/publications/Wan2017d/CGF.pdf", } @Article{SCI:Wan2017e, author = "Y. Wan and H. Otsuna and H. A. Holman and B. Bagley and M. Ito and A. K. Lewis and M. Colasanto and G. Kardon and K. Ito and C. Hansen", title = "FluoRender: joint freehand segmentation and visualization for many-channel fluorescence data analysis", journal = "BMC Bioinformatics", volume = "18", number = "1", year = "2017", publisher = "Springer Nature", month = "May", url = "https://publications.utah.edu/publications/Wan2017e/BMC_Bioinformatics.pdf", } @Article{SCI:Wol2017a, author = "J. J. Wolff and M. R. Swanson and J. T. Elison and G. Gerig and J. R. Pruett and M. A. Styner and C. Vachet and K. N. Botteron and S. R. Dager and A. M. Estes and H. C. Hazlett and R. T. 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MacLeod", title = "Spatial organization of acute myocardial ischemia", journal = "Journal of Electrocardiology", volume = "49", number = "3", pages = "323–336", year = "2016", publisher = "Elsevier", month = "May", url = "https://publications.utah.edu/publications/Ara2016a/macleod_spatial.pdf", } @Article{SCI:Atk2016a, author = "P.R. Atkins and S.Y. Elhabian and P. Agrawal and M.D. Harris and R.T. Whitaker and J.A. Weiss and C.L. Peters and A.E. Anderson", title = "Quantitative comparison of cortical bone thickness using correspondence-based shape modeling in patients with cam femoroacetabular impingement", journal = "Journal of Orthopaedic Research", year = "2016", publisher = "Wiley-Blackwell", month = "Nov", url = "https://publications.utah.edu/publications/Atk2016a/Atkins_et_al-2016-Journal_of_Orthopaedic_Research.pdf", } @Article{SCI:Bak2016a, author = "J.L. Baker and J. Ryou and X.F. Wei and C.R. Butson and N.D. Schiff and K.P. Purpura", title = "Robust modulation of arousal regulation, performance, and frontostriatal activity through central thalamic deep brain stimulation in healthy nonhuman primates", journal = "Journal of Neurophysiology", volume = "116", number = "5", pages = "2383--2404", year = "2016", publisher = "American Physiological Society", month = "Aug", url = "https://publications.utah.edu/publications/Bak2016a/Butson 2016 J of Neurophsiology.pdf", } @Article{SCI:Bar2016a, author = "M. Barjatia and T. Tasdizen and B. Song and K.M. Golden", title = "Network modeling of Arctic melt ponds", journal = "Cold Regions Science and Technology", volume = "124", pages = "40--53", year = "2016", publisher = "Elsevier BV", month = "April", url = "https://publications.utah.edu/publications/Bar2016a/1-s2.0-S0165232X15002992-main.pdf", } @TechReport{SCI:Bec2016a, author = "J. Beckvermit and T. Harman and C. Wight and M. Berzins", title = "Physical Mechanisms of DDT in an Array of PBX 9501 Cylinders Initiation Mechanisms of DDT", year = "2016", institution = "SCI Institute", month = "April", url = "https://publications.utah.edu/publications/Bec2016a/SCI-TR-2016-001.pdf", } @Article{SCI:Bec2016b, author = "J. Beckvermit and T. Harman and C. Wight and and M. Berzins", title = "Packing Configurations of PBX-9501 Cylinders to Reduce the Probability of a Deflagration to Detonation Transition (DDT)", journal = "Propellants, Explosives, Pyrotechnics", year = "2016", issn = "1521-4087", url = "https://publications.utah.edu/publications/Bec2016b/Preprint-Packi-49870.pdf", } @Article{SCI:Ber2016a, author = "M. Berzins and J. Beckvermit and T. Harman and A. Bezdjian and A. Humphrey and Q. Meng and J. Schmidt and and C. Wight", title = "Extending the Uintah Framework through the Petascale Modeling of Detonation in Arrays of High Explosive Devices", journal = "SIAM Journal on Scientific Computing ", volume = "38", number = "5", pages = "S101-S122", year = "2016", url = "https://publications.utah.edu/publications/Ber2015a/detonationsiam16-2.pdf", } @Article{SCI:Big2016a, author = "A. Bigelow and R. Choudhury and J. Baumes", title = "Resonant Laboratory and Candela: Spreading Your Visualization Ideas to the Masses", journal = "Proceedings of Workshop on Visualization in Practice (VIP '16)", year = "2016", note = "Best Paper Award ", url = "https://publications.utah.edu/publications/Big2016a/2016_vip_resonant_lab.pdf", } @Article{SCI:Chr2016a, author = "C. Christensen and S. Liu and G. Scorzelli and J. Lee and P.-T. Bremer and V. Pascucci", title = "Embedded Domain-Specific Language and Runtime System for Progressive Spatiotemporal Data Analysis and Visualization", journal = "Symposium on Large Data Analysis and Visualization", year = "2016", publisher = "IEEE", url = "https://publications.utah.edu/publications/Chr2016a/christiensen_LDAV16.pdf", } @Article{SCI:Dee2016a, author = "W. Deeb and J. J. Giordano and P. J. Rossi and A. Y. Mogilner and A. Gunduz and J. W. Judy and B. T. Klassen and C. R. Butson and C. Van Horne and D. Deny and D. D. Dougherty and D. Rowell and G. A. Gerhardt and G. S. Smith and F. A. Ponce and H. C. Walker and H. M. Bronte-Stewart and H. S. Mayberg and H. J. Chizeck and J. Langevin and J. Volkmann and J. L. Ostrem and J. B. Shute and J. Jimenez-Shahed and K. D. Foote and A. W. Shukla and M. A. Rossi and M. Oh and M. Pourfar and P. B. Rosenberg and P. A. Silburn and C. de Hemptine and P. A. Starr and T. Denison and U. Akbar and W. M. Grill and and M. S. Okun", title = "Proceedings of the Fourth Annual Deep Brain Stimulation Think Tank: A Review of Emerging Issues and Technologies", journal = "Frontiers in Integrative Neuroscience", volume = "10", pages = "38", year = "2016", issn = "1662-5145", url = "https://publications.utah.edu/publications/Dee2016a/fnint-10-00038.pdf", } @InProceedings{SCI:Elh2016a, author = "S. Elhabian and C. Vachet and J. Piven and M. Styner and G. Gerig", title = "Compressive sensing based Q-space resampling for handling fast bulk motion in hardi acquisitions", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", pages = "907--910", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Elh2016a/ELHABIAN_ISBI_2016_CAMERA_READY.pdf", } @InProceedings{SCI:Elh2016b, author = "S. Elhabian and P. Agrawal and R. Whitaker", title = "Optimal parameter map estimation for shape representation: A generative approach", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", pages = "660--663", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Elh2016b/07493353.pdf", } @InProceedings{SCI:Elw2016a, author = "M. Elwardy and T. Tasdizen and M. Cetin", title = "Disjunctive Normal Unsupervised LDA for P300-based Brain-Computer Interfaces", booktitle = "2016 24th Signal Processing and Communication Application Conference (SIU)", year = "2016", publisher = "IEEE", month = "May", url = "https://publications.utah.edu/publications/Elw2016a/07496226.pdf", } @InProceedings{SCI:Erd2016a, author = "E. Erdil and M. Cetin and T. Tasdizen", title = "MCMC Shape Sampling for Image Segmentation with Nonparametric Shape Priors", booktitle = "2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR)", year = "2016", publisher = "IEEE", month = "June", url = "https://publications.utah.edu/publications/Erd2016a/Erdil_MCMC_Shape_Sampling_CVPR_2016_paper.pdf", } @InProceedings{SCI:Erd2016b, author = "E. Erdil and L. Rada and A.O. Argunsah and D. Unay and T. Tasdizen and M. Cetin", title = "Nonparametric joint shape and feature priors for segmentation of dendritic spines", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Erd2016b/07493279.pdf", } @Article{SCI:Ere2016a, author = "B. Erem and R.M. Orellana and D.E. Hyde and J.M. Peters and F.H. Duffy and P. Stovicek and S.K. Warfield and R.S. MacLeod and G. Tadmor and D.H. 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Michalik and A. Mante and M. Bola and A. Lux and S. Kropf and S.A. Brandt and B.A. Sabel", title = "Alternating Current Stimulation for Vision Restoration after Optic Nerve Damage: A Randomized Clinical Trial", journal = "PLOS ONE", volume = "11", number = "6", pages = "e0156134", year = "2016", publisher = "Public Library of Science", month = "June", url = "https://publications.utah.edu/publications/Gal2016a/journal.pone.0156134.PDF", } @InProceedings{SCI:Gao2016a, author = "Y. Gao and M. Zhang and K. Grewen and P. T. Fletcher and G. Gerig", title = "Image registration and segmentation in longitudinal MRI using temporal appearance modeling", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", pages = "629--632", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Gao2016a/ISBI2016_Yang_edited.pdf", } @InCollection{SCI:Gha2016a, author = "M.U. Ghani and E. Erdil and S.D. Kanik and A.O. Argunsah and A. Hobbiss and I. Israely and D. Unay and T. Tasdizen and M. Cetin", title = "Dendritic Spine Shape Analysis: A Clustering Perspective", booktitle = "Lecture Notes in Computer Science", pages = "256--273", year = "2016", publisher = "Springer International Publishing", url = "https://publications.utah.edu/publications/Gha2016a/1607.05523.pdf", } @InProceedings{SCI:Gha2016b, author = "M.U. Ghani and A.O. Argunsah and I. Israely and D. Unay and T. Tasdizen and M. Cetin", title = "On comparison of manifold learning techniques for dendritic spine classification", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Gha2016b/07493278.pdf", } @InProceedings{SCI:Gha2016c, author = "M.U. Ghani and F. Mesadi and S..D Kanik and A.O. Argunsah and I. Israely and D. Unay and T. Tasdizen and M. Cetin", title = "Dendritic spine shape analysis using disjunctive normal shape models", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Gha2016c/07493280.pdf", } @Article{SCI:Gra2016a, author = "Samuel Gratzl and Alexander Lex and Nils Gehlenborg and Nicola Cosgrove and Marc Streit ", title = "From Visual Exploration to Storytelling and Back Again", journal = "Computer Graphics Forum", volume = "35", number = "3", pages = "491--500", year = "2016", month = "jun", issn = "1467-8659", url = "https://publications.utah.edu/publications/Gra2016a/2016_eurovis_clue.pdf", } @Article{SCI:Gri2016a, author = "C. Gritton and M. Berzins", title = "Improving accuracy in the MPM method using a null space filter", journal = "Computational Particle Mechanics", pages = "1--12", year = "2016", issn = "2196-4386", url = "https://publications.utah.edu/publications/Gri2016a/mpmpaper.pdf", } @InProceedings{SCI:Gro2016a, author = "A.V. P. Grosset and A. Knoll and C.D. Hansen", title = "Dynamically Scheduled Region-Based Image Compositing", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization", year = "2016", month = "June", url = "https://publications.utah.edu/publications/Gro2016a/paper_egpgv_16.pdf", } @Article{SCI:Gro2016b, author = "A. V. P. Grosset and M. Prasad and C. Christensen and A. Knoll and C. Hansen", title = "TOD-Tree: Task-Overlapped Direct send Tree Image Compositing for Hybrid MPI Parallelism and GPUs", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "1--1", year = "2016", publisher = "IEEE", url = "https://publications.utah.edu/publications/Gro2016b/07433468.pdf", } @Article{SCI:Gul2016a, author = "S. Guler and M. Dannhauer and B. Erem and R.S. Macleod and D. Tucker and S. Turovets and P. Luu and D. Erdogmus and D. Brooks", title = "Optimization of focality and direction in dense electrode array transcranial direct currentstimulation (tDCS)", journal = "Journal of Neural Engineering", volume = "13", number = "3", pages = "036020", year = "2016", publisher = "IOP Publishing", month = "May", url = "https://publications.utah.edu/publications/Gul2016a/Guler2016JNE.pdf", } @Article{SCI:Hol2016a, author = "B. Hollister and G. Duffley and C. Butson and and C.R. Johnson", title = "Visualization for Understanding Uncertainty in Activation Volumes for Deep Brain Stimulation", journal = "Eurographics Conference on Visualization", year = "2016", editor = "K.L. Ma G. Santucci, and J. van Wijk", url = "https://publications.utah.edu/publications/Hol2016a/final-eurovis16-rev2.pdf", } @InProceedings{SCI:Hum2016a, author = "A. Humphrey and D. Sunderland and T. Harman and M. Berzins", title = "Radiative Heat Transfer Calculation on 16384 GPUs Using a Reverse Monte Carlo Ray Tracing Approach with Adaptive Mesh Refinement", booktitle = "2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)", pages = "1222-1231", year = "2016", month = "May", url = "https://publications.utah.edu/publications/Hum2016a/ipdps-pdsec16.pdf", } @Article{SCI:Iye2016a, author = "S.K. Iyer and T. Tasdizen and D. Likhite and E.V.R. DiBella", title = "Split Bregman multicoil accelerated reconstruction technique: A new framework for rapid reconstruction of cardiac perfusion MRI", journal = "Medical Physics", volume = "43", number = "4", pages = "1969--1981", year = "2016", publisher = "Wiley-Blackwell", month = "March", url = "https://publications.utah.edu/publications/Iye2016a/Iyer_et_al-2016-Medical_Physics.pdf", } @Article{SCI:Iye2016b, author = "S.K. Iyer and T. Tasdizen and N. Burgon and E. Kholmovski and N. Marrouche and G. Adluru and E.V.R. DiBella", title = "Compressed sending for rapid late gadolinium enhanced imaging of the left atrium: A preliminary study, Magnetic Resonance Imaging", journal = "Magnetic Resonance Imaging", volume = "34", number = "7", pages = "846--854", year = "2016", publisher = "Elsevier BV", month = "September", url = "https://publications.utah.edu/publications/Iye2016b/1-s2.0-S0730725X16000242-main.pdf", } @Article{SCI:Kim2016a, author = "S. Kim and I.Lyu and V. Fonov and C. Vachet and H. Hazlett and R. Smith and J. Piven and S. Dager and R. Mckinstry and J. Pruett and A. Evans and D. Collins and K. Botteron and R. Schultz and G. Gerig and M. Styner", title = "Development of Cortical Shape in the Human Brain from 6 to 24 Months of Age via a Novel Measure of Shape Complexity", journal = "NeuroImage", volume = "135", pages = "163--176", year = "2016", publisher = "Elsevier", month = "July", url = "https://publications.utah.edu/publications/Kim2016a/kim-neuroimage-2016.pdf", } @Article{SCI:Lar2016a, author = "M. Larsen and K. Moreland and C.R. Johnson and and H. Childs", title = "Optimizing Multi-Image Sort-Last Parallel Rendering", journal = "Symposium on Large Data Analysis and Visualization", year = "2016", publisher = "IEEE", url = "https://publications.utah.edu/publications/Lar2016a/LDAV-Paper-2016.pdf", } @Article{SCI:Liu2016a, author = "T. Liu and S.M. Seyedhosseini and T. Tasdizen", title = "Image Segmentation Using Hierarchical Merge Tree", journal = "IEEE Transactions on Image Processing", volume = "25", number = "10", pages = "4596--4607", year = "2016", publisher = "IEEE", month = "Oct", url = "https://publications.utah.edu/publications/Liu2016a/07515198.pdf", } @InCollection{SCI:Liu2016b, author = "T. Liu and M. Zhang and M. Javanmardi and N. Ramesh and T. Tasdizen", title = "SSHMT: Semi-supervised Hierarchical Merge Tree for Electron Microscopy Image Segmentation", title_url = "https://link.springer.com/chapter/10.1007%2F978-3-319-46448-0_9#citeas", booktitle = "Lecture Notes in Computer Science", volume = "9905", pages = "144--159", year = "2016", publisher = "Springer International Publishing", } @Article{SCI:Lju2016a, author = "P. Ljung and J. Krüger and E. Gröller and M. Hadwiger and C. D. Hansen and and A. Ynnerman", title = "State of the Art in Transfer Functions for Direct Volume Rendering", journal = "Computer Graphics Forum", volume = "35", number = "3", pages = "669--691", year = "2016", publisher = "Wiley-Blackwell", month = "June", url = "https://publications.utah.edu/publications/Lju2016a/Transfer-Function-Design-2016.pdf", } @Article{SCI:Mal2016a, author = "D. Maljovec and S. Liu and Bei Wang and V. Pascucci and P. T. Bremer and D. Mandelli and C. Smith.", title = "Analyzing Simulation-Based PRA Data Through Traditional and Topological Clustering: A BWR Station Blackout Case Study", journal = "Reliability Engineering & System Safety", volume = "145", pages = "262--276", year = "2016", publisher = "Elsevier", month = "January", url = "https://publications.utah.edu/publications/Mal2016a/RESS_BWR_BeiWang_2015.pdf", } @InProceedings{SCI:Mes2016a, author = "F. Mesadi and M. Cetin and T. Tasdizen", title = "Disjunctive normal level set: An efficient parametric implicit method", booktitle = "2016 IEEE International Conference on Image Processing (ICIP)", year = "2016", publisher = "IEEE", month = "September", url = "https://publications.utah.edu/publications/Mes2016a/07533171.pdf", } @Article{SCI:Mor2016b, author = "K. Moreland and C. Sewell and W. Usher and L. Lo and J. Meredith and D. Pugmire and J. Kress and H. Schroots and K. Ma and H. Childs and M. Larsen and C. Chen and R. Maynard and B. Geveci", title = "VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures", journal = "IEEE Computer Graphics and Applications", volume = "36", number = "3", pages = "48--58", year = "2016", month = "May", issn = "0272-1716", url = "https://publications.utah.edu/publications/Mor2016b/07466740.pdf", } @InProceedings{SCI:Mur2016a, author = "P. Muralidharan and J. Fishbaugh and E. Y. Kim and H. J. Johnson and J. S. Paulsen and G. Gerig and P. T. Fletcher", title = "Bayesian Covariate Selection in Mixed Effects Models for Longitudinal Shape Analysis", booktitle = "International Symposium on Biomedical Imaging (ISBI)", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Mur2016a/paper.pdf", } @Article{SCI:Par2016a, author = "C. Partl and S. Gratzl and M. Streit and A. Wassermann and H. Pfister and D. Schmalstieg and A. Lex", title = "Pathfinder: Visual Analysis of Paths in Graphs", journal = "Computer Graphics Forum (EuroVis '16)", volume = "35", number = "3", pages = "71-80", year = "2016", month = "jun", issn = "1467-8659", url = "https://publications.utah.edu/publications/Par2016a/2016_eurovis_pathfinder.pdf", } @Article{SCI:Pat2016a, author = "Y. Pathak and O. Salami and S. Baillet and Z. Li and C.R. Butson", title = "Longitudinal Changes in Depressive Circuitry in Response to Neuromodulation Therapy", journal = "Frontiers in Neural Circuits", volume = "10", year = "2016", publisher = "rontiers Media SA", month = "July", url = "https://publications.utah.edu/publications/Pat2016a/pathak_2016.pdf", } @Article{SCI:Pol2016a, author = "I.A. Polejaeva and R. Ranjan and C.J. Davies and M. Regouski and J. Hall and A.L. Olsen and Q. Meng and H.M. Rutigliano and D.J. Dosdall and N.A. Angel and F.B. Sachse and T. Seidel and A.J. Thomas and R. Stott and K.E. Panter and P.M. Lee and A.J. Van Wettere and J.R. Stevens and Z. Wang and R.S. Macleod and N.F. Marrouche and K.L. White", title = "Increased Susceptibility to Atrial Fibrillation Secondary to Atrial Fibrosis in Transgenic Goats Expressing Transforming Growth Factor-β1", journal = "Journal of Cardiovascular Electrophysiology", volume = "27", number = "10", pages = "1220--1229", year = "2016", publisher = "Wiley-Blackwell", month = "Aug", url = "https://publications.utah.edu/publications/Pol2016a/POLEJAEVA_et_al-2016.pdf", } @Article{SCI:Raj2016a, author = "M. Raj and M. Mirzargar and R. Kirby and R. Whitaker and J. Preston", title = "Evaluating Shape Alignment via Ensemble Visualization", journal = "IEEE Computer Graphics and Applications", volume = "36", number = "3", pages = "60--71", year = "2016", publisher = "IEEE", month = "May", url = "https://publications.utah.edu/publications/Raj2016a/Raj_2016.pdf", } @InProceedings{SCI:Rod2016a, author = "I. Rodero and M. Parashar and A.G. Landge and S. Kumar and V. Pascucci and and P.T. Bremer", title = "Evaluation of in-situ analysis strategies at scale for power efficiency and scalability", booktitle = "Cluster, Cloud and Grid Computing (CCGrid), 2016 16th IEEE/ACM International Symposium on", pages = "156--164", year = "2016", publisher = "IEEE", url = "https://publications.utah.edu/publications/Rod2016a/CCGRID.pdf", } @InCollection{SCI:Ros2016a, author = "P. Rosen and B. Burton and K. Potter and C.R. Johnson", title = "muView: A Visual Analysis System for Exploring Uncertainty in Myocardial Ischemia Simulations", booktitle = "Visualization in Medicine and Life Sciences III", pages = "49--69", year = "2016", publisher = "Springer Nature", url = "https://publications.utah.edu/publications/Ros2016a/rosen_muview.pdf", } @Unpublished{SCI:Rud2016a, author = "U. Rüde and K. Willcox and L. C. McInnes and H. De Sterck and G. Biros and H. Bungartz and J. Corones and E. Cramer and J. Crowley and O. Ghattas and M. Gunzburger and M. Hanke and R. Harrison and M. Heroux and J. Hesthaven and P. Jimack and C.R. Johnson and K. E. Jordan and D. E. Keyes and R. Krause and V. Kumar and S. Mayer and J. Meza and K. M. Mørken and J. T. Oden and L. Petzold and P. Raghavan and S. M. Shontz and A. Trefethen and P. Turner and V. Voevodin and B. Wohlmuth and C. S. Woodward", title = "Research and Education in Computational Science and Engineering", subtitle = "Report from a workshop sponsored by the Society for Industrial and Applied Mathematics (SIAM) and the European Exascale Software Initiative (EESI-2)", year = "2016", month = "Aug", url = "https://publications.utah.edu/publications/Rud2016a/1610.02608v3.pdf", } @Article{SCI:Saj2016a, author = "M. Sajjadi and S.M. Seyedhosseini and T. Tasdizen", title = "Disjunctive Normal Networks", journal = "Neurocomputing", volume = "218", pages = "276--285", year = "2016", publisher = "Elsevier BV", month = "Dec", url = "https://publications.utah.edu/publications/Saj2016a/1-s2.0-S0925231216309432-main.pdf", } @Article{SCI:Saj2016b, author = "M. Sajjadi and M. Javanmardi and T. Tasdizen", title = "Regularization With Stochastic Transformations and Perturbations for Deep Semi-Supervised Learning", journal = "CoRR", volume = "abs/1606.04586", year = "2016", url = "https://publications.utah.edu/publications/Saj2016b/1606.04586.pdf", } @InProceedings{SCI:Saj2016c, author = "M. Sajjadi and M. Javanmardi and T. Tasdizen", title = "Mutual exclusivity loss for semi-supervised deep learning", booktitle = "2016 IEEE International Conference on Image Processing (ICIP)", year = "2016", publisher = "IEEE", month = "September", url = "https://publications.utah.edu/publications/Saj2016c/07532690.pdf", } @Article{SCI:Sey2016a, author = "S.M. Seyedhosseini and T. Tasdizen", title = "Semantic Image Segmentation with Contextual Hierarchical Models", journal = "IEEE Transactions on Pattern Analysis and Machine Intelligence", volume = "38", number = "5", pages = "951--964", year = "2016", publisher = "IEEE", month = "May", url = "https://publications.utah.edu/publications/Sey2016a/07226830.pdf", } @Article{SCI:Ste2016a, author = "H. De Sterck and C. R. Johnson and and L. C. McInnes", title = "Special Section on Two Themes: CSE Software and Big Data in CSE", journal = "SIAM J. Sci. Comput", volume = "38", number = "5", pages = "S1--S2", year = "2016", publisher = "SIAM", url = "https://publications.utah.edu/publications/Ste2016a/16n974188.pdf", } @InProceedings{SCI:Sun2016a, author = "D. Sunderland and B. Peterson and J. Schmidt and A. Humphrey and J. Thornock and and M. Berzins", title = "An Overview of Performance Portability in the Uintah Runtime System Through the Use of Kokkos", booktitle = "Proceedings of the Second Internationsl Workshop on Extreme Scale Programming Models and Middleware", pages = "44--47", year = "2016", series = "ESPM2", publisher = "IEEE Press", address = "Piscataway, NJ, USA", location = "Salt Lake City, Utah", isbn = "978-1-5090-3858-9", url = "https://publications.utah.edu/publications/Sun2016a/ESPM2Dan-sunderland.pdf", } @InProceedings{SCI:Sun2016c, author = "D. Sunderland and B. Peterson and J. Schmidt and A. Humphrey and J. Thornock and M. Berzins", title = "An Overview of Performance Portability in the Uintah Runtime System through the Use of Kokkos", booktitle = "2016 Second International Workshop on Extreme Scale Programming Models and Middlewar (ESPM2)", year = "2016", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/Sun2016c/espm2FINAL.pdf", } @Article{SCI:Ton2016a, author = "X. Tong and J. Edwards and C. Chen and H. Shen and C. R. Johnson and P. Wong", title = "View-Dependent Streamline Deformation and Exploration", journal = "Transactions on Visualization and Computer Graphics", volume = "22", number = "7", pages = "1788--1801", year = "2016", publisher = "IEEE", month = "July", issn = "1077-2626", keywords = "Context;Deformable models;Lenses;Shape;Streaming media;Three-dimensional displays;Visualization;Flow visualization;deformation;focus+context;occlusion;streamline;white matter tracts", url = "https://publications.utah.edu/publications/Ton2016a/deform2_tvcg.pdf", } @Article{SCI:Ush2016b, author = "W. Usher and I. Wald and A. Knoll and M. Papka and V. Pascucci", title = "In Situ Exploration of Particle Simulations with CPU Ray Tracing", journal = "Supercomputing Frontiers and Innovations", volume = "3", number = "4", year = "2016", issn = "2313-8734", url = "https://publications.utah.edu/publications/Ush2016b/in_situ_particles.pdf", } @InProceedings{SCI:Won2016a, author = "E. Wong and S. Palande and Bei Wang and B. Zielinski and J. Anderson and P. T. Fletcher", title = "Kernel Partial Least Squares Regression for Relating Functional Brain Network Topology to Clinical Measures of Behavior", booktitle = "2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)", year = "2016", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Won2016a/ISBI_topology_behavior 1.pdf", } @Article{SCI:Ara2015a, author = "K.K. Aras and W. Good and J. Tate and B.M. Burton and D.H. Brooks and J. Coll-Font and O. Doessel and W. Schulze and D. Patyogaylo and L. Wang and P. Van Dam and and R.S. MacLeod", title = "Experimental Data and Geometric Analysis Repository: EDGAR", journal = "Journal of Electrocardiology", year = "2015", url = "https://publications.utah.edu/publications/Ara2015a/aras-j-electrocardio15-2.pdf", } @Article{SCI:Bar2015a, author = "I. Arganda-Carreras and S.C. Turaga and D.R. Berger and D. Ciresan and A. Giusti and L.M. Gambardella and J. Schmidhuber and D. Laptev and S. Dwivedi and J. Buhmann and T. Liu and M. Seyedhosseini and T. Tasdizen and L. Kamentsky and R. Burget and V. Uher and X. Tan and C. Sun and T.D. Pham and E. Bas and M.G. Uzunbas and A. Cardona and J. Schindelin and H.S. Seung", title = "Crowdsourcing the creation of image segmentation algorithms for connectomics", journal = "Frontiers in Neuroanatomy", volume = "9", year = "2015", publisher = "Frontiers Media SA", month = "Nov", url = "https://publications.utah.edu/publications/Bar2015a/fnana-09-00142.pdf", } @Book{SCI:Ben2015a, author = "J. Bennett and F. Vivodtzev and V. Pascucci (Eds.)", title = "Topological and Statistical Methods for Complex Data", title_url = "http://link.springer.com/book/10.1007/978-3-662-44900-4", subtitle = "Tackling Large-Scale, High-Dimensional, and Multivariate Data Spaces", year = "2015", series = "Mathematics and Visualization", publisher = "Springer Berlin Heidelberg", isbn = "978-3-662-44899-1", } @Unpublished{SCI:Ben2015b, author = "J. Bennett and R. Clay and G. Baker and M. Gamell and D. Hollman and S. Knight and H. Kolla and G. Sjaardema and N. Slattengren and K. Teranishi and J. Wilke and M. Bettencourt and S. Bova and K. Franko and P. Lin and R. Grant and S. Hammond and S. Olivier", title = "ASC ATDM Level 2 Milestone #5325", subtitle = "Asynchronous Many-Task Runtime System Analysis and Assessment for Next Generation Platforms", year = "2015", note = "Sandia Report", url = "https://publications.utah.edu/publications/Ben2015b/Sandia2015_AMT_RTS_L2-2.pdf", } @TechReport{SCI:Ben2015c, author = "J. Bennett and R. Clay and G. Baker and M. Gamell and D. Hollman and S. Knight and H. Kolla and G. Sjaardema and N. Slattengren and K. Teranishi and J. Wilke and M. Bettencourt and S. Bova and K. Franko and P. Lin and R. Grant and S. Hammond and S. Olivier and L. Kale and N. Jain and E. Mikida and A. Aiken and M. Bauer and W. Lee and E. Slaughter and S. Treichler and M. Berzins and T. Harman and A. Humphrey and J. Schmidt and D. Sunderland and P. McCormick and S. Gutierrez and M. Schulz and A. Bhatele and D. Boehme and P. Bremer and T. Gamblin", title = "ASC ATDM level 2 milestone #5325: Asynchronous many-task runtime system analysis and assessment for next generation platforms", year = "2015", institution = "Sandia National Laboratories", url = "https://publications.utah.edu/publications/Ben2015c/ATDM-AMT-L2-Final-SAND2015-8312.pdf", } @Article{SCI:Bha2015a, author = "H. Bhatia and Bei Wang and G. Norgard and V. Pascucci and P. T. Bremer", title = "Local, Smooth, and Consistent Jacobi Set Simplification", journal = "Computational Geometry", volume = "48", number = "4", pages = "311-332", year = "2015", publisher = "Elsevier", month = "May", url = "https://publications.utah.edu/publications/Bha2015a/JacobiSetSimplification_BeiWang_2015.pdf", } @Article{SCI:Bre2015a, author = "P. T. Bremer and D. Maljovec and A. Saha and Bei Wang and J. Gaffney and B. K. Spears and V. Pascucci", title = "ND2AV: N-Dimensional Data Analysis and Visualization -- Analysis for the National Ignition Campaign", journal = "Computing and Visualization in Science", year = "2015", url = "https://publications.utah.edu/publications/Bre2015a/NIC_BeiWang_2014.pdf", } @Article{SCI:Bre2015b, author = "T. Bregman and R. Reznikov and M. Diwan and R. Raymond and C. R.Butson and J. N.Nobrega and C. Hamani", title = "Antidepressant-like Effects of Medial Forebrain Bundle Deep Brain Stimulation in Rats are not Associated With Accumbens Dopamine Release", journal = "Brain Stimulation", volume = "8", number = "4", pages = "708--713", year = "2015", url = "https://publications.utah.edu/publications/Bre2015b/1-s2.0-S1935861X15008876-main.pdf", } @Article{SCI:But2015a, author = "C. R. Butson and C. C. McIntyre", title = "The use of stimulation field models for deep brain stimulation programming", journal = "Brain Stimulation", volume = "8", number = "5", pages = "976--978", year = "2015", publisher = "Elsevier BV", month = "September", url = "https://publications.utah.edu/publications/But2015a/PIIS1935861X15010062.pdf", } @Article{SCI:Car2015a, author = "H. Carr and Z. Geng and J. Tierny and A. Chattophadhyay and and A. Knoll", title = "Fiber Surfaces: Generalizing Isosurfaces to Bivariate Data", journal = "Computer Graphics Forum", volume = "34", number = "3", pages = "241-250", year = "2015", url = "https://publications.utah.edu/publications/Car2015a/carr_eurovis15.pdf", } @Misc{SCI:CIBCData, author = "{CIBC}", year = "2015", note = "Data Sets: {NCRR} Center for Integrative Biomedical Computing ({CIBC}) data set archive. Download from: http://www.sci.utah.edu/cibc/software.html", keywords = "datasets, CIBC", } @Misc{SCI:Cleaver, author = "CIBC", year = "2015", note = "Cleaver: A MultiMaterial Tetrahedral Meshing Library and Application. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software.html", keywords = "Cleaver, CIBC", } @Article{SCI:Con2015a, author = "C.C. Conlin and J.L. Zhang and F. Rousset and C. Vachet and Y. Zhao and K.A. Morton and K. Carlston and G. Gerig and V.S. Lee", title = "Performance of an Efficient Image-registration Algorithm in Processing MR Renography Data", title_url = "http://onlinelibrary.wiley.com/doi/10.1002/jmri.25000/epdf", journal = "J Magnetic Resonance Imaging", year = "2015", month = "July", } @Book{SCI:Dur2015a, author = "S. Durrleman and T.P. Fletcher and G. Gerig and M. Niethammer and X. Pennec (Eds.)", title = "Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data", title_url = "http://www.springer.com/computer/image+processing/book/978-3-642-33554-9", booktitle = "Proceedings of the Third International Workshop, STIA 2014", volume = "8682", year = "2015", series = "Image Processing, Computer Vision, Pattern Recognition, and Graphics", publisher = "Springer {LNCS}", publisher_url = "http://www.springer.com/lncs", isbn = "978-3-319-14905-9", } @Article{SCI:Edw2015a, author = "J. Edwards and S. Kumar and V. Pascucci", title = "Big data from scientific simulations", journal = "Big Data and High Performance Computing", volume = "26", pages = "32", year = "2015", publisher = "IOS Press", url = "https://publications.utah.edu/publications/Edw2015a/BiG_Data_Chapter.pdf", } @Article{SCI:Edw2015b, author = "J. Edwards and E. Daniel and V. Pascucci and C. Bajaj", title = "Approximating the Generalized Voronoi Diagram of Closely Spaced Objects", journal = "Computer Graphics Forum", volume = "34", number = "2", pages = "299-309", year = "2015", publisher = "Wiley-Blackwell", month = "May", url = "https://publications.utah.edu/publications/Edw2015b/edwards2015eg.pdf", } @InProceedings{SCI:Erd2015a, author = "E. Erdil and A.O. Argunsah and T. Tasdizen and D. Unay and M. Cetin", title = "A joint classification and segmentation approach for dendritic spine segmentation in 2-photon microscopy images", booktitle = "2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)", year = "2015", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Erd2015a/07163992.pdf", } @Book{SCI:Eti2015b, author = "T. Etiene and R.M. Kirby and C. Silva", title = "An Introduction to Verification of Visualization Techniques", year = "2015", publisher = "Morgan & Claypool Publishers", url = "https://publications.utah.edu/publications/Eti2015b/s00679ed1v01y201511cgr022.pdf", } @Misc{SCI:FluoRender, author = "{SCI} Institute", year = "2015", note = "{FluoRender}: An interactive rendering tool for confocal microscopy data visualization. Scientific Computing and Imaging Institute ({SCI}) Download from: http://www.fluorender.org", keywords = "FluoRender, volume rendering", } @Misc{SCI:Fusion, year = "2015", note = "{FusionView}: Problem Solving Environment for {MHD} Visualization. Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.scirun.org", keywords = "Fusion, VACET", } @Article{SCI:Gao2015a, author = "Y. Gao and L. Zhu and J. Cates and R. S. MacLeod and S. Bouix and and A. Tannenbaum", title = "A Kalman Filtering Perspective for Multiatlas Segmentation", journal = "SIAM J. Imaging Sciences", volume = "8", number = "2", pages = "1007-1029", year = "2015", url = "https://publications.utah.edu/publications/Gao2015a/gao_siam_imaging2015.pdf", } @InProceedings{SCI:Gha2015a, author = "M.U. Ghani and S.D. Kanik and A.O. Argunsah and T. Tasdizen and D. Unay and M. Cetin", title = "Dendritic spine shape classification from two-photon microscopy images", booktitle = "2015 23nd Signal Processing and Communications Applications Conference (SIU)", year = "2015", publisher = "IEEE", month = "May", url = "https://publications.utah.edu/publications/Gha2015a/07129985.pdf", } @Article{SCI:Gil2015a, author = "K. Gillette and J.D. Tate and B. Kindall and P. Van Dam and E. Kholmovski and R.S. MacLeod", title = "Generation of Combined-Modality Tetrahedral Meshes", journal = "Computing in Cardiology", year = "2015", url = "https://publications.utah.edu/publications/Gil2015a/gillette-comp-in-cardio15-2.pdf", } @Article{SCI:Goo2015a, author = "B. D. Goodwin and C. R. Butson", title = "Subject-Specific Multiscale Modeling to Investigate Effects of Transcranial Magnetic Stimulation", journal = "Neuromodulation: Technology at the Neural Interface", volume = "18", number = "8", pages = "694--704", year = "2015", publisher = "Wiley-Blackwell", month = "May", url = "https://publications.utah.edu/publications/Goo2015a/Goodwin_et_al-2015-Neuromodulation__Technology_at_the_Neural_Interface.pdf", } @InProceedings{SCI:Gri2015a, author = "C. Gritton and M. Berzins and R. M. Kirby", title = "Improving Accuracy In Particle Methods Using Null Spaces and Filters", booktitle = "Proceedings of the IV International Conference on Particle-Based Methods - Fundamentals and Applications", booktitle_url = "http://congress.cimne.com/particles2015/frontal/doc/E-book_PARTICLES_2015.pdf", pages = "202-213", year = "2015", editor = "E. Onate and M. Bischoff and D.R.J. Owen and P. Wriggers and T. Zohdi", publisher = "CIMNE", month = "September", location = "Barcelona, Spain", isbn = "978-84-944244-7-2", url = "https://publications.utah.edu/publications/Gri2015a/paperforP15-2.pdf", } @InProceedings{SCI:Gro2015a, author = "A. V. P. Grosset and M. Prasad and C. Christensen and A. Knoll and C. Hansen", title = "TOD-Tree: Task-Overlapped Direct send Tree Image Compositing for Hybrid MPI Parallelism", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization (2015)", year = "2015", editor = "C. Dachsbacher, P. Navrátil", url = "https://publications.utah.edu/publications/Gro2015a/grosset_epvg2015.pdf", } @Article{SCI:Gun2015a, author = "A. Gunduz and H. Morita and P. J. Rossi and W. L. Allen and R. L. Alterman and H. Bronte-Stewart and C. R. Butson and D. Charles and S. Deckers and C. de Hemptinne and M. DeLong and D. Dougherty and J. Ellrich and K. D. Foote and J. Giordano and W. Goodman and B. D. Greenberg and D. Greene and R. Gross and J. W. Judy and E. Karst and A. Kent and B. Kopell and A. Lang and A. Lozano and C. Lungu and K. E. Lyons and A. Machado and H. Martens and C. McIntyre and H. Min and J. Neimat and J. Ostrem and S. Pannu and F. Ponce and N. Pouratian and D. Reymers and L. Schrock and S. Sheth and L. Shih and S. Stanslaski and G. K. Steinke and P. Stypulkowski and A. I. Tröster and L. Verhagen and H. Walker and M. S. Okun", title = "Proceedings of the Second Annual Deep Brain Stimulation Think Tank: What's in the Pipeline", journal = "International Journal of Neuroscience", volume = "125", number = "7", pages = "475-485", year = "2015", publisher = "Taylor & Francis", url = "https://publications.utah.edu/publications/Gun2015a/Proceedings of the Second Annual Deep Brain Stimulation Think Tank What s in the Pipeline.pdf", } @Conference{SCI:Gyu2015a, author = "A. Gyulassy and A. Knoll and K. C. Lau and Bei Wang and P. T. Bremer and M. E. Papka and L. A. Curtiss and V. Pascucci", title = "Morse-Smale Analysis of Ion Diffusion for DFT Battery Materials Simulations", title_url = "http://www.sci.utah.edu/~beiwang/publications/Nanosphere_TopoInVis_BeiWang_2015.pdf", booktitle = "Topology-Based Methods in Visualization (TopoInVis)", year = "2015", } @InProceedings{SCI:Gyu2015b, author = "A. Gyulassy and A. Knoll and K. C. Lau and Bei Wang and PT. Bremer and M.l E. Papka and L. A. Curtiss and V. Pascucci", title = "Interstitial and Interlayer Ion Diffusion Geometry Extraction in Graphitic Nanosphere Battery Materials", booktitle = "Proceedings IEEE Visualization Conference", year = "2015", url = "https://publications.utah.edu/publications/Gyu2015b/Nanosphere_Vis_BeiWang_2015.pdf", } @InCollection{SCI:Hol2015a, author = "J. K. Holmen and A. Humphrey and M. Berzins", title = "Exploring Use of the Reserved Core", booktitle = "High Performance Parallelism Pearls", pages = "229-242", year = "2015", editor = "J. Reinders and J. Jeffers", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Hol2015a/exploring-use-of-the-reserved-core-2.pdf", } @InCollection{SCI:Hum2015a, author = "A. Humphrey and T. Harman and M. Berzins and P. Smith", title = "A Scalable Algorithm for Radiative Heat Transfer Using Reverse Monte Carlo Ray Tracing", title_url = "http://dx.doi.org/10.1007/978-3-319-20119-1_16", booktitle = "High Performance Computing", volume = "9137", pages = "212-230", year = "2015", editor = "Kunkel, Julian M. and Ludwig, Thomas", series = "Lecture Notes in Computer Science", publisher = "Springer International Publishing", isbn = "978-3-319-20118-4", keywords = "Uintah; Radiation modeling; Parallel; Scalability; Adaptive mesh refinement; Simulation science; Titan", url = "https://publications.utah.edu/publications/Hum2015a/humphrey_isc2015.pdf", } @Misc{SCI:ImageVis3D, author = "{CIBC}", year = "2015", note = "{ImageVis3D}: An interactive visualization software system for large-scale volume data. Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.imagevis3d.org", keywords = "ImageVis3D, CIBC", } @InCollection{SCI:Joh2015a, author = "C.R. Johnson and K. Potter", title = "Visualization", booktitle = "The Princeton Companion to Applied Mathematics", booktitle_url = "http://press.princeton.edu/titles/10592.html", pages = "843-846", year = "2015", editor = "Nicholas J. Higham", publisher = "Princeton University Press", month = "September", isbn = "9780691150390", } @InCollection{SCI:Joh2015b, author = "H. De Sterck and C.R. Johnson", title = "Data Science: What Is It and How Is It Taught?", title_url = "https://sinews2.siam.org/DetailsPage/tabid/607/ArticleID/565/Data-Science.aspx", booktitle = "SIAM News", year = "2015", publisher = "SIAM", month = "July", url = "https://publications.utah.edu/publications/Joh2015b/Data-Science-SIAM_News-July-2015.pdf", } @InBook{SCI:Joh2015c, author = "C.R. Johnson", title = "Computational Methods and Software for Bioelectric Field Problems", booktitle = "Biomedical Engineering Handbook", volume = "1", pages = "1--28", year = "2015", editor = "J.D. Bronzino and D.R. Peterson", chapter = "43", publisher = "CRC Press", edition = "4", url = "https://publications.utah.edu/publications/Joh2015c/Computational Methods and Software for Bioelectric Field Problems.pdf", } @InCollection{SCI:Joh2015d, author = "C.R. Johnson", title = "Visualization", booktitle = "Encyclopedia of Applied and Computational Mathematics", booktitle_url = "http://www.springer.com/us/book/9783540705284#aboutBook", pages = "1537-1546", year = "2015", editor = "Björn Engquist", publisher = "Springer", isbn = "978-3-540-70528-4", url = "https://publications.utah.edu/publications/Joh2015d/Visualization.pdf", } @Article{SCI:Jon2015a, author = "C. Jones and T. Liu and N.W. Cohan and M. Ellisman and T. Tasdizen", title = "Efficient semi-automatic 3D segmentation for neuron tracing in electron microscopy images", journal = "Journal of Neuroscience Methods", volume = "246", pages = "13--21", year = "2015", publisher = "Elsevier BV", month = "May", url = "https://publications.utah.edu/publications/Jon2015a/1-s2.0-S0165027015000874-main.pdf", } @Article{SCI:Kim2015a, author = "M. Kim and C.D. Hansen", title = "Surface Flow Visualization using the Closest Point Embedding", journal = "2015 IEEE Pacific Visualization Symposium", year = "2015", month = "April", keywords = "vector field, flow visualization", url = "https://publications.utah.edu/publications/Kim2015a/Kim_PacVis2015.pdf", } @InProceedings{SCI:Kim2015b, author = "M. Kim and C.D. Hansen", title = "{GPU} Surface Extraction with the Closest Point Embedding", booktitle = "Proceedings of IS\&T/SPIE Visualization and Data Analysis, 2015", year = "2015", month = "February", keywords = "scalar field methods, GPGPU, curvature based, scientific visualization", url = "https://publications.utah.edu/publications/Kim2015b/Kim_SPIEVDA2015.pdf", } @Book{SCI:Kir2015c, author = "R.M. Kirby and M. Berzins and J.S. Hesthaven (Editors)", title = "Spectral and High Order Methods for Partial Differential Equations", title_url = "http://www.springer.com/us/book/9783319197999", subtitle = "Selected Papers from the ICOSAHOM'14 Conference, June 23-27, 2014, Salt Lake City, UT, USA.", booktitle = "Lecture Notes in Computational Science and Engineering", year = "2015", publisher = "Springer", } @Article{SCI:Lil2015a, author = "O. A. von Lilienfeld and R. Ramakrishanan and M. and A. Knoll", title = "Fourier Series of Atomic Radial Distribution Functions: A Molecular Fingerprint for Machine Learning Models of Quantum Chemical Properties", journal = "International Journal of Quantum Chemistry", year = "2015", publisher = "Wiley Online Library", url = "https://publications.utah.edu/publications/Lil2015a/lilienfield2015.pdf", } @Conference{SCI:Liu2015a, author = "S. Liu and D. Maljovec and Bei Wang and P. T. Bremer and V. Pascucci", title = "Visualizing High-Dimensional Data: Advances in the Past Decade", booktitle = "State of The Art Report", year = "2015", organization = "Eurographics Conference on Visualization (EuroVis)", url = "https://publications.utah.edu/publications/Liu2015a/Vis_HD_STAR_BeiWang_2015.pdf", } @Article{SCI:Liu2015b, author = "S. Liu and Bei Wang and J. J. Thiagarajan and P. T. Bremer and V. Pascucci", title = "Visual Exploration of High-Dimensional Data through Subspace Analysis and Dynamic Projections", journal = "Computer Graphics Forum", volume = "34", number = "3", pages = "271--280", year = "2015", publisher = "Wiley-Blackwell", month = "June", url = "https://publications.utah.edu/publications/Liu2015b/Subspace_Dynamic_Projection_BeiWang_2015.pdf", } @Misc{SCI:Map3d, author = "{CIBC}", year = "2015", note = "map3d: Interactive scientific visualization tool for bioengineering data. Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.sci.utah.edu/cibc/software.html", keywords = "Map3d, CIBC", } @Article{SCI:Mcd2015a, author = "K.S. McDowell and S. Zahid and F. Vadakkumpadan and J.J. Blauer and R.S. MacLeod and N.A. Trayanova", title = "Virtual Electrophysiological Study of Atrial Fibrillation in Fibrotic Remodeling", journal = "PLoS ONE", volume = "10", number = "2", pages = "e0117110", year = "2015", month = "February", url = "https://publications.utah.edu/publications/Mcd2015a/McDowell_PLoSONE2015.pdf", } @Article{SCI:Mcd2015b, author = "K. S. McDowell and S. Zahid and F. Vadakkumpadan and J. Blauer and R. S. MacLeod and N. A. Trayanova", title = "Virtual Electrophysiological Study of Atrial Fibrillation in Fibrotic Remodeling", journal = "PLoS ONE", volume = "10", number = "2", pages = "1-16", year = "2015", publisher = "Public Library of Science", month = "May", url = "https://publications.utah.edu/publications/Mcd2015b/journal.pone.0117110.PDF", } @Article{SCI:Mck2015a, author = "S. McKenna and M. Meyer and C. Gregg and S. Gerber", title = "s-CorrPlot: An Interactive Scatterplot for Exploring Correlation", title_url = "http://dx.doi.org/10.1080/10618600.2015.1021926", journal = "Journal of Computational and Graphical Statistics", year = "2015", url = "https://publications.utah.edu/publications/Mck2015a/McKenna_CompGraphStat15.pdf", } @InProceedings{SCI:Mes2015a, author = "F. Mesadi and M. Cetin and T. Tasdizen", title = "Disjunctive Normal Shape and Appearance Priors with Applications to Image Segmentation", title_url = "https://link.springer.com/chapter/10.1007%2F978-3-319-24574-4_84", booktitle = "Lecture Notes in Computer Science", pages = "703--710", year = "2015", publisher = "Springer International Publishing", isbn = "978-3-319-24574-4", } @Misc{SCI:NCRTools, author = "{SCI} Institute", year = "2015", note = "{NCR} Toolset: A collection of software tools for the reconstruction and visualization of neural circuitry from electron microscopy data. Scientific Computing and Imaging Institute ({SCI}). Download from: http://www.sci.utah.edu/software.html", keywords = "NCR Toolset, neural circuit reconstruction, electron microscopy data", } @InProceedings{SCI:Nob2015a, author = "C. Nobre and A. Lex", title = "OceanPaths: Visualizing Multivariate Oceanography Data", booktitle = "Eurographics Conference on Visualization (EuroVis) - Short Papers", year = "2015", editor = "E. Bertini, J. Kennedy, E. Puppo", publisher = "The Eurographics Association", url = "https://publications.utah.edu/publications/Nob2015a/2015_eurovis_oceanpaths.pdf", } @Article{SCI:Ogu2015a, author = "I. OguzI and J. Cates and M. Datar and B. Paniagua and T. Fletcher and C. Vachet and M. Styner and R. Whitaker", title = "Entropy-based particle correspondence for shape populations", title_url = "http://link.springer.com/article/10.1007%2Fs11548-015-1319-6", journal = "International Journal of Computer Assisted Radiology and Surgery", pages = "1-12", year = "2015", publisher = "Springer", month = "December", } @Article{SCI:Par2015a, author = "B.R. Parmar and T.R. Jarrett and E.G. Kholmovski and N. Hu and D. Parker and R.S. MacLeod and N.F. Marrouche and R. Ranjan", title = "Poor scar formation after ablation is associated with atrial fibrillation recurrence", title_url = "http://www.ncbi.nlm.nih.gov/pubmed/26455362", journal = "Journal of Interventional Cardiac Electrophysiology", volume = "44", number = "3", pages = "247-256", year = "2015", month = "December", } @TechReport{SCI:Pet2015f, author = "B. Peterson and N. Xiao and J. Holmen and S. Chaganti and A. Pakki and J. Schmidt and D. Sunderland and A. Humphrey and M. Berzins", title = "Developing Uintah’s Runtime System For Forthcoming Architectures", title_url = "http://respa15.rice.edu/files/2015/11/9-2csbfkt.pdf", subtitle = "Refereed paper presented at the RESPA 15 Workshop at SuperComputing 2015 Austin Texas", year = "2015", institution = "SCI Institute", url = "https://publications.utah.edu/publications/Pet2015f/9-2csbfkt.pdf", } @InProceedings{SCI:Pet2015g, author = "B. Peterson and H. K. Dasari and A. Humphrey and J.C. Sutherland and T. Saad and M. Berzins", title = "Reducing overhead in the Uintah framework to support short-lived tasks on GPU-heterogeneous architectures", booktitle = "Proceedings of the 5th International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC'15)", pages = "4:1-4:8", year = "2015", publisher = "ACM", url = "https://publications.utah.edu/publications/Pet2015g/wolfhpc-sc15.pdf", } @Article{SCI:Phi2015a, author = "J. M. Phillips and Bei Wang and Y. Zheng", title = "Geometric Inference on Kernel Density Estimates", journal = "CoRR", volume = "abs/1307.7760", year = "2015", url = "https://publications.utah.edu/publications/Phi2015a/KDE_Geomtric_Inference_BeiWang_2015.pdf", } @Article{SCI:Pru2015a, author = "J.R. Pruett Jr. and S. Kandala and S. Hoertel and A.Z. Snyder and J.T. Elison and T. Nishino and E. Feczko and N.U.F. Dosenbach and B. Nardos and J.D. Power and B. Adeyemo and K.N. Botteron and R.C. McKinstry and A.C. Evans and H.C. Hazlett and S.R. Dager and S. Paterson and R.T. Schultz and D.L. Collins and V.S. Fonov and M. Styner and G. Gerig and S. Das and P. Kostopoulos and J.N. Constantino and A.M. Estes and The IBIS Network and S.E. Petersen and B.L. Schlaggar and J. Piven", title = "Accurate age classification of 6 and 12 month-old infants based on resting-state functional connectivity magnetic resonance imaging data", journal = "Developmental Cognitive Neuroscience", volume = "12", pages = "123--133", year = "2015", month = "April", } @Article{SCI:Puj2015a, author = "S. Pujol and W. Wells and C. Pierpaoli and C. Brun and J. Gee and G. Cheng and B. Vemuri and O. Commowick and S. Prima and A. Stamm and M. Goubran and A. Khan and T. Peters and P. Neher and K. H. Maier-Hein and Y. Shi and A. Tristan-Vega and G. Veni and R. Whitaker and M. Styner and C.F. Westin and S. Gouttard and I. Norton and L. Chauvin and H. Mamata and G. Gerig and A. Nabavi and A. Golby and and R. Kikinis", title = "The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery", journal = "Journal of Neuroimaging", year = "2015", publisher = "Wiley", month = "August", url = "https://publications.utah.edu/publications/Puj2015a/Pujol_et_al-2015-Journal_of_Neuroimaging.pdf", } @Article{SCI:Raj2015a, author = "M. Raj and M. Mirzargar and R. Kirby and R. Whitaker and J. Preston", title = "Evaluating Alignment of Shapes by Ensemble Visualization", journal = "IEEE Computer Graphics and Applications", year = "2015", publisher = "IEEE", url = "https://publications.utah.edu/publications/Raj2015a/evaluating-alignment-2.pdf", } @InProceedings{SCI:Ram2015a, author = "N. Ramesh and F. Mesadi and M. Cetin and T. Tasdizen", title = "Disjunctive normal shape models", booktitle = "2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)", year = "2015", publisher = "IEEE", month = "April", url = "https://publications.utah.edu/publications/Ram2015a/07164170.pdf", } @Unpublished{SCI:Ree2015a, author = "D. Reed and M. Berzins and R. Lucas and S. Matsuoka and R. Pennington and V. Sarkar and V. Taylor", title = "DOE Advanced Scientific Computing Advisory Committee (ASCAC) Report: Exascale Computing Initiative Review", year = "2015", note = "DOE Report", url = "https://publications.utah.edu/publications/Ree2015a/ASCAC_Exascale_Computing_Initiative_Report.pdf", } @Article{SCI:Rut2015a, author = "H. J.V. Rutherford and G. Gerig and S. Gouttard and M. N. Potenza and L. C. Mayes", title = "Investigating maternal brain structure and its relationship to substance use and motivational systems", journal = "Yale Journal of Biology and Medicine, in print", year = "2015", url = "https://publications.utah.edu/publications/Rut2015a/helena_yale_2015.pdf", } @Article{SCI:Sad2015a, author = "N. Sadeghi and J. H. Gilmore and G. Gerig", title = "Modeling Brain Growth and Development", journal = "Brain", volume = "1", pages = "429-436", year = "2015", url = "https://publications.utah.edu/publications/Sad2015a/sadeghi_brain2015.pdf", } @Article{SCI:Saj2015a, author = "M. Sajjadi and M. Seyedhosseini and and T. Tasdizen", title = "Nonlinear Regression with Logistic Product Basis Networks", journal = "IEEE Signal Processing Letters", volume = "22", number = "8", pages = "1011--1015", year = "2015", publisher = "IEEE", month = "Aug", url = "https://publications.utah.edu/publications/Saj2015a/06985567.pdf", } @Article{SCI:Sal2015b, author = "A. P. Salzwedel and K. M. Grewen and C. Vachet and G. Gerig and W. Lin and and W. Gao", title = "Prenatal Drug Exposure Affects Neonatal Brain Functional Connectivity", journal = "The Journal of Neuroscience", volume = "35", number = "14", pages = "5860-5869", year = "2015", month = "April", url = "https://publications.utah.edu/publications/Sal2015b/salzwedel_jns_2015.pdf", } @Article{SCI:San2015a, author = "S. Sankaranarayanan and T.E. Schomay and K.A. Aiello and O. Alter", title = "Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival", journal = "PLoS ONE", volume = "10", number = "e121396", year = "2015", } @Misc{SCI:SciInst, year = "2015", note = "Scientific Computing and Imaging Institute ({SCI}), University of Utah, www.sci.utah.edu", keywords = "SCI Institute", } @Misc{SCI:SCIRun, author = "{SCI} Institute", year = "2015", note = "{SCIRun}: A Scientific Computing Problem Solving Environment, Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.scirun.org", keywords = "SCIRun, CIBC", } @Misc{SCI:Seg3D, author = "{CIBC}", year = "2015", note = "{Seg3D}: Volumetric Image Segmentation and Visualization. Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.seg3d.org", keywords = "Seg3D, CIBC", } @Article{SCI:Sey2015a, author = "M. Seyedhosseini and T. Tasdizen", title = "Disjunctive normal random forests", journal = "Pattern Recognition", volume = "48", number = "3", pages = "976--983", year = "2015", publisher = "Elsevier BV", month = "March", url = "https://publications.utah.edu/publications/Sey2015a/randomforests2015.pdf", } @Article{SCI:Sey2015b, author = "S.M. Seyedhosseini and S. Shushruth and T. Davis and J.M. Ichida and P.A. House and B. Greger and A. Angelucci and T. Tasdizen", title = "Informative features of local field potential signals in primary visual cortex during natural image stimulation", journal = "Journal of Neurophysiology", volume = "113", number = "5", pages = "1520--1532", year = "2015", publisher = "American Physiological Society", month = "March", url = "https://publications.utah.edu/publications/Sey2015b/jn.00278.2014.pdf", } @Misc{SCI:ShapeWorks, author = "{SCI} Institute", year = "2015", note = "{ShapeWorks}: An open-source tool for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on specific surface parameterization. Scientific Computing and Imaging Institute ({SCI}). Download from: http://www.sci.utah.edu/software/shapeworks.html", keywords = "ShapeWorks, shape works, modeling", } @Article{SCI:Skr2015a, author = "P. Skraba and Bei Wang and G. Chen and P. Rosen", title = "Robustness-Based Simplification of 2D Steady and Unsteady Vector Fields", journal = "IEEE Transactions on Visualization and Computer Graphics (to appear)", year = "2015", url = "https://publications.utah.edu/publications/Skr2015a/Robustness_Unsteady_VF_BeiWang_2015.pdf", } @Misc{SCI:SLASH, author = "{SLASH}", year = "2015", note = "{SLASH}: A hybrid system for high-throughput segmentation of large neuropil datasets, SLASH is funded by the National Institute of Neurological Disorders and Stroke (NINDS) grant 5R01NS075314-03.", keywords = "SLASH, SCI", } @Article{SCI:Str2015a, author = "H. Strobelt and B. Alsallakh and J. Botros and B. Peterson and M. Borowsky and H. Pfister and and A. Lex", title = "Vials: Visualizing Alternative Splicing of Genes", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '15)", volume = "22", number = "1", pages = "399-408", year = "2015", url = "https://publications.utah.edu/publications/Str2015a/2015_infovis_vials.pdf", } @Article{SCI:Sum2015a, author = "B. Summa and A. A. Gooch and G. Scorzelli and V. Pascucci", title = "Paint and Click: Unified Interactions for Image Boundaries", journal = "Computer Graphics Forum", volume = "34", number = "2", pages = "385--393", year = "2015", publisher = "Wiley-Blackwell", month = "May", url = "https://publications.utah.edu/publications/Sum2015a/Summa_et_al-2015-Computer_Graphics_Forum.pdf", } @Article{SCI:Swa2015a, author = "M. R. Swanson and J. J. Wolff and J. T. Elison and H. Gu and H. C. Hazlett and K. Botteron and M. Styner and S. Paterson and G. Gerig and J. Constantino and S. Dager and A. Estes and C. Vachet and J. Piven", title = "Splenium development and early spoken language in human infants", journal = "Developmental Science", year = "2015", publisher = "Wiley Online Library", issn = "1467-7687", url = "https://publications.utah.edu/publications/Swa2015a/Swanson-et-a-2015-Spleniun-development-2.pdf", } @Misc{SCI:VisTrails, year = "2015", note = "{VisTrails}: A scientific workflow management system. Scientific Computing and Imaging Institute ({SCI}), Download from: http://www.vistrails.org", keywords = "VisTrails", } @InProceedings{SCI:Wal2015a, author = "I. Wald and A. Knoll and G. P. Johnson and W. Usher and V. Pascucci and M. E. Papka", title = "CPU Ray Tracing Large Particle Data with Balanced P-k-d Trees", booktitle = "2015 IEEE Scientific Visualization Conference", year = "2015", publisher = "IEEE", month = "Oct", url = "https://publications.utah.edu/publications/Wal2015a/ospParticle.pdf", } @Unpublished{SCI:Whi2015a, author = "R. Whitaker and W. Thompson and J. Berger and B. Fischhof and M. Goodchild and M. Hegarty and C. Jermaine and K. S. McKinley and A. Pang and J. Wendelberger", title = "Workshop on Quantification, Communication, and Interpretation of Uncertainty in Simulation and Data Science", year = "2015", note = "Computing Community Consortium", url = "https://publications.utah.edu/publications/Whi2015a/CCC-Uncertainty-Report-Final.pdf", } @Article{SCI:Wol2015b, author = "J. J. Wolff and G. Gerig and J. D. Lewis and T. Soda and M. A. Styner and C. Vachet and K. N. Botteron and J. T. Elison and S. R. Dager and A. M. Estes and H. C. Hazlett and R. T. Schultz and L. Zwaigenbaum and J. Piven", title = "Altered corpus callosum morphology associated with autism over the first 2 years of life", journal = "Brain", year = "2015", url = "https://publications.utah.edu/publications/Wol2015b/brain_wolff2015.pdf", } @InProceedings{SCI:Zha2015a, author = "M. Zhang and P. T. Fletcher", title = "Finite-Dimensional Lie Algebras for Fast Diffeomorphic Image Registration", booktitle = "Information Processing in Medical Imaging (IPMI)", year = "2015", url = "https://publications.utah.edu/publications/Zha2015a/Zhang_IPMI2015.pdf", } @Article{SCI:Zha2015b, author = "M. Zhang and P. T. Fletcher", title = "Bayesian Principal Geodesic Analysis for Estimating Intrinsic Diffeomorphic Image Variability", journal = "Medical Image Analysis (accepted)", year = "2015", url = "https://publications.utah.edu/publications/Zha2015b/zhang_medimageanalysis2015.pdf", } @Article{SCI:Zha2015c, author = "M. Zhang and H. Shao and P. T. Fletcher", title = "A Mixture Model for Automatic Diffeomorphic Multi-Atlas Building", journal = "MICCAI Workshop", year = "2015", publisher = "Springer", url = "https://publications.utah.edu/publications/Zha2015c/55dceb7354960-GMM.pdf", } @InProceedings{SCI:Adl2014a, author = "G. Adluru and Y. Gur and J. Anderson and L. Richards and N. Adluru and E. DiBella", title = "Assessment of white matter microstructure in stroke patients using {NODDI}", booktitle = "Proceedings of the 2014 {IEEE} Int. Conf. Engineering and Biology Society ({EMBC})", year = "2014", url = "https://publications.utah.edu/publications/Adl2014a/Adluru_NODDIwithStroke.pdf", } @Article{SCI:Awa2014a, author = "S.P. Awate and R.T. Whitaker", title = "Multiatlas Segmentation as Nonparametric Regression", journal = "{IEEE} Trans Med Imaging", year = "2014", month = "April", } @InProceedings{SCI:Awa2014b, author = "S.P. Awate and Y.-Y. Yu and R.T. Whitaker", title = "Kernel Principal Geodesic Analysis", booktitle = "Proceedings of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases ({ECML} {PKDD})", year = "2014", publisher = "Springer {LNAI}", } @Article{SCI:Bha2014a, author = "H. Bhatia and V. Pascucci and R.M. Kirby and P.-T. Bremer", title = "Extracting Features from Time-Dependent Vector Fields Using Internal Reference Frames", journal = "Computer Graphics Forum", volume = "33", number = "3", pages = "21--30", year = "2014", month = "June", url = "https://publications.utah.edu/publications/Bha2014a/Bhatia_EuroVis2014.pdf", } @InCollection{SCI:Bha2014b, author = " H. Bhatia and A. Gyulassy and H. Wang and P.-T. Bremer and V. Pascucci ", title = "Robust Detection of Singularities in Vector Fields", booktitle = "Topological Methods in Data Analysis and Visualization III", pages = "3--18", year = "2014", series = "Mathematics and Visualization", publisher = "Springer International Publishing", month = "March", url = "https://publications.utah.edu/publications/Bha2014b/Bhatia_TopoInVis2014.pdf", } @Article{SCI:Bha2014c, author = "H. Bhatia and V. Pascucci and P.-T. Bremer", title = "The Natural Helmholtz-Hodge Decomposition For Open-Boundary Flow Analysis", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "99", pages = "1566--1578", year = "2014", url = "https://publications.utah.edu/publications/Bha2014c/Bhatia_TVCG2014.pdf", } @InProceedings{SCI:Big2014a, author = "A. Bigelow and S. Drucker and D. Fisher and M.D. Meyer", title = "Reflections on How Designers Design With Data", booktitle = "Proceedings of the ACM International Conference on Advanced Visual Interfaces ({AVI})", year = "2014", note = "Awarded Best Paper!", keywords = "Visualization, infographics, design practice", url = "https://publications.utah.edu/publications/Big2014a/Bigelow_AVI2014.pdf", } @Article{SCI:Bla2014a, author = "J.J.E. Blauer and D. Swenson and K. Higuchi and G. Plank and R. Ranjan and N. Marrouche and and R.S. MacLeod", title = "Sensitivity and Specificity of Substrate Mapping: An In Silico Framework for the Evaluation of Electroanatomical Substrate Mapping Strategies", booktitle = "Journal of Cardiovascular Electrophysiology", journal = "Journal of Cardiovascular Electrophysiology", volume = "25", number = "7", pages = "774--780", year = "2014", month = "May", note = "Featured on journal cover.", keywords = "arrhythmia, computer-based model, electroanatomical mapping, voltage mapping, bipolar electrogram", url = "https://publications.utah.edu/publications/Bla2014a/Blauer_JCE2014-BPA_Modeling-formatted.pdf", url = "https://publications.utah.edu/publications/Bla2014a/Blauer_JCE2014-OnlineSupplement-formatted.pdf", } @InCollection{SCI:Bon2014a, author = "G.P. Bonneau and H.C. Hege and C.R. Johnson and M.M. Oliveira and K. Potter and P. Rheingans and T. Schultz", title = "Overview and State-of-the-Art of Uncertainty Visualization", booktitle = "Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization", pages = "3--27", year = "2014", editor = "M. Chen and H. Hagen and C.D. Hansen and C.R. Johnson and A. Kauffman", publisher = "Springer-Verlag", isbn = "978-1-4471-6496-8", issn = "1612-3786", url = "https://publications.utah.edu/publications/Bon2014a/Overview-Uncertainty-Visualization-2015.pdf", } @Book{SCI:Bre2014a, title = "Topological Methods in Data Analysis and Visualization III", year = "2014", editor = "Peer-Timo Bremer and Ingrid Hotz and Valerio Pascucci and Ronald Peikert", publisher = "Springer International Publishing", isbn = "978-3-319-04099-8", } @Article{SCI:Bro2014a, author = "J. Bronson and J.A. Levine and R.T. Whitaker", title = "Lattice cleaving: a multimaterial tetrahedral meshing algorithm with guarantees", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", pages = "223--237", year = "2014", url = "https://publications.utah.edu/publications/Bro2014a/Bronson_TVCG2014.pdf", } @Article{SCI:But2014a, author = "M.S. Okun and S.S. Wu and S. Fayad and H. Ward and D. Bowers and C. Rosado and L. Bowen and C. Jacobson and C.R. Butson and K.D. Foote", title = "Acute and Chronic Mood and Apathy Outcomes from a Randomized Study of Unilateral {STN} and {GPi} {DBS}", journal = "PLoS ONE", volume = "9", number = "12", pages = "e114140", year = "2014", month = "December", url = "https://publications.utah.edu/publications/But2014a/Okun_PONE2014.pdf", } @Unpublished{SCI:Cha2014a, author = "B. Chapman and H. Calandra and S. Crivelli and J. Dongarra and J. Hittinger and C.R. Johnson and S.A. Lathrop and V. Sarkar and E. Stahlberg and J.S. Vetter and D. Williams", title = "ASCAC Workforce Subcommittee Letter", year = "2014", month = "July", note = "Office of Scientific and Technical Information", howpublished = "DOE ASCAC Committee Report", url = "https://publications.utah.edu/publications/Cha2014a/ASCAC_Workforce_Letter_Report2014.pdf", } @Article{SCI:Coo2014a, author = "S.E. Cooper and K.G. Driesslein and A.M. Noecker and C.C. McIntyre and A.M. Machado and C.R. Butson", title = "Anatomical targets associated with abrupt versus gradual washout of subthalamic deep brain stimulation effects on bradykinesia", journal = "PloS One", volume = "9", number = "8", pages = "e99663", year = "2014", month = "January", issn = "1932-6203", url = "https://publications.utah.edu/publications/Coo2014a/Cooper_PlosOne2014.pdf", } @Article{SCI:Dub2014a, author = "A. Dubey and A. Almgren and John Bell and M. Berzins and S. Brandt and G. Bryan and P. Colella and D. Graves and M. Lijewski and F. Löffler and B. O’Shea and E. Schnetter and B. Van Straalen and K. Weide", title = "A survey of high level frameworks in block-structured adaptive mesh refinement packages", journal = "Journal of Parallel and Distributed Computing", year = "2014", keywords = "SAMR, BoxLib, Chombo, FLASH, Cactus, Enzo, Uintah", url = "https://publications.utah.edu/publications/Dub2014a/Dubey_JPDC2014.pdf", } @Article{SCI:Dur2014a, author = "S. Durrleman and M. Prastawa and N. Charon and J.R. Korenberg and S. Joshi and G. Gerig and A. Trouvé", title = "Morphometry of anatomical shape complexes with dense deformations and sparse parameters", journal = "NeuroImage", year = "2014", keywords = "morphometry, deformation, varifold, anatomy, shape, statistics", url = "https://publications.utah.edu/publications/Dur2014a/Durrleman_NeuroImage2014.pdf", } @Article{SCI:Edg2014a, author = "L.T. Edgar and C.J. Underwood and J.E. Guilkey and J.B. Hoying and J.A. Weiss", title = "Extracellular matrix density regulates the rate of neovessel growth and branching in sprouting angiogenesis", journal = "PLOS one", volume = "9", number = "1", year = "2014", url = "https://publications.utah.edu/publications/edgar14/Edgar_PlosOne2014.pdf", } @InProceedings{SCI:Elh2014a, author = "S. Elhabian and Y. Gur and C. Vachet and J. Piven and M. Styner and I. Leppert and G.B. Pike and G. Gerig", title = "A Preliminary Study on the Effect of Motion Correction On {HARDI} Reconstruction", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", keywords = "Diffusion MRI, HARDI, motion correction, interpolation", url = "https://publications.utah.edu/publications/elhabian14/ElhabianISBI2014.pdf", } @InProceedings{SCI:Elh2014b, author = "S. Elhabian and Y. Gur and J. Piven and M. Styner and I. Leppert and G.B. Pike and G. Gerig", title = "Subject-Motion Correction in {HARDI} Acquisitions: Choices and Consequences", title_url = "http://journal.frontiersin.org/Journal/10.3389/fneur.2014.00240/abstract", booktitle = "Proceeding of the 2014 Joint Annual Meeting {ISMRM-ESMRMB}", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/Elh2014b/ISMRM-DTI_QC_submitted_abstract.pdf", } @InProceedings{SCI:Elh2014c, author = "S. Elhabian and Y. Gur and J. Piven and M. Styner and I. Leppert and G. Bruce Pike and G. Gerig", title = "Motion is inevitable: The impact of motion correction schemes on hardi reconstructions", booktitle = "Proceedings of the {MICCAI} 2014 Workshop on Computational Diffusion {MRI}", year = "2014", month = "September", url = "https://publications.utah.edu/publications/Elh2014c/Elhabian_CDMRI2014.pdf", } @Article{SCI:Elh2014d, author = "S.Y. Elhabian and Y. Gur and C. Vachet and J. Piven and M.A. Styner and I.R. Leppert and B. Pike and G. Gerig", title = "Subject-Motion Correction in HARDI Acquisitions: Choices and Consequences", journal = "Frontiers in Neurology - Brain Imaging Methods", year = "2014", url = "https://publications.utah.edu/publications/Elh2014d/Elhabian_FrontNeuro-BIM2014.pdf", } @Article{SCI:Eti2014a, author = "T. Etiene and D. Jonsson and T. Ropinski and C. Scheidegger and J.L.D. Comba and L. G. Nonato and R. M. Kirby and A. Ynnerman and and C. T. Silva", title = "Verifying Volume Rendering Using Discretization Error Analysis", journal = "IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS", volume = "20", number = "1", pages = "140-154", year = "2014", publisher = "IEEE", month = "January", url = "https://publications.utah.edu/publications/Eti2014a/Kirby-79.pdf", } @InProceedings{SCI:Fau2014a, author = "A. Faucett and T. Harman and T. Ameel", title = "Computational Determination of the Modified Vortex Shedding Frequency for a Rigid, Truncated, Wall-Mounted Cylinder in Cross Flow", booktitle = "Volume 10: Micro- and Nano-Systems Engineering and Packaging", year = "2014", publisher = "ASME International Mechanical Engineering Congress and Exposition (IMECE)", organization = "International Conference on Computational Science", month = "November", location = "Montreal", } @InProceedings{SCI:Fis2014a, author = "J. Fishbaugh and M. Prastawa and G. Gerig and S. Durrleman", title = "Geodesic Regression of Image and Shape Data for Improved Modeling of {4D} Trajectories", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/fishbaugh14/fishbaugh_isbi2014.pdf", } @InProceedings{SCI:Fog2014a, author = "T. Fogal and F. Proch and A. Schiewe and O. Hasemann and A. Kempf and J. Krüger", title = "{Free}processing: Transparent in situ visualization via data interception", booktitle = "Proceedings of the 14th Eurographics Conference on Parallel Graphics and Visualization", year = "2014", series = "EGPGV", publisher = "Eurographics Association", url = "https://publications.utah.edu/publications/Fog2014a/Fogal-2014-InSitu.pdf", } @TechReport{SCI:Fu2014a, author = "Z. Fu and H.K. Dasari and M. Berzins and B. Thompson", title = "Parallel Breadth First Search on GPU Clusters", number = "UUSCI-2014-002", year = "2014", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "GPU cluster, MPI, BFS, graph, parallel graph algorithm", url = "https://publications.utah.edu/publications/Fu2014a/UUSCI-2014-002.pdf", } @InProceedings{SCI:Fu2014b, author = "Z. Fu and H.K. Dasari and M. Berzins and B. Thompson", title = "Parallel Breadth First Search on {GPU} Clusters", booktitle = "Proceedings of the {IEEE} {BigData} 2014 Conference", year = "2014", month = "October", location = "Washington DC", keywords = "GPU cluster, MPI, BFS, graph, parallel graph algorithm", url = "https://publications.utah.edu/publications/Fu2014b/Fu_BigData2014.pdf", } @InProceedings{SCI:Gao2014a, author = "Y. Gao and M. Prastawa and M. Styner and J. Piven and G. Gerig", title = "A Joint Framework for {4D} Segmentation and Estimation of Smooth Temporal Appearance Changes", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/gao14/Gao_ISBI2014.pdf", } @Article{SCI:Gen2014a, author = "M.G. Genton and C.R. Johnson and K. Potter and G. Stenchikov and Y. Sun", title = "Surface boxplots", journal = "Stat Journal", volume = "3", number = "1", pages = "1--11", year = "2014", url = "https://publications.utah.edu/publications/Gen2014a/Genton_GJPSS2014.pdf", } @InProceedings{SCI:Gey2014a, author = "T. Geymayer and M. Steinberger and A. Lex and M. Streit and and D. Schmalstieg", title = "Show me the Invisible: Visualizing Hidden Content", booktitle = "Proceedings of the ACM SIGCHI Conference on Human Factors in Computing Systems (CHI '14)", pages = "3705--3714", year = "2014", series = "CHI '14", publisher = "ACM", isbn = "978-1-4503-2473-1", url = "https://publications.utah.edu/publications/Gey2014a/2014_chi_hidden-content.pdf", } @Article{SCI:Gra2014a, author = "S. Gratzl and N. Gehlenborg and A. Lex and H. Pfister and M. Streit", title = "Domino: Extracting, Comparing, and Manipulating Subsets across Multiple Tabular Datasets", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '14)", volume = "20", number = "12", pages = "2023--2032", year = "2014", issn = "1077-2626", url = "https://publications.utah.edu/publications/Gra2014a/2014_infovis_domino.pdf", } @Article{SCI:Gre2014a, author = "K. Grewen and M. Burchinal and C. Vachet and S. Gouttard and J.H. Gilmore and W. Lin and J. Johns and M. Elam and G. Gerig", title = "Prenatal cocaine effects on brain structure in early infancy", journal = "NeuroImage", volume = "101", pages = "114--123", year = "2014", month = "November", url = "https://publications.utah.edu/publications/Gre2014a/2014-Prenatal-cocaine-effects-on-brain-structure-in-early-infancy.pdf", } @MastersThesis{SCI:Gri2014a, author = "C.E. Gritton", title = "Ringing Instabilities in Particle Methods", year = "2014", school = "School of Computing, University of Utah", month = "August", note = "M.S. in Computational Engineering and Science, advisor Martin Berzins", url = "https://publications.utah.edu/publications/Gri2014a/CGritton_MSThesis2014.pdf", } @InProceedings{SCI:Gur2014a, author = "Y. Gur and C.R. Johnson", title = "Generalized {HARDI} Invariants by Method of Tensor Contraction", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "718--721", year = "2014", month = "April", keywords = "Diffusion MRI, HARDI, invariants", url = "https://publications.utah.edu/publications/Gur2014a/Gur_ISBI2014.pdf", } @Article{SCI:Ham2014a, author = "C. Hamani and B.O. Amorim and A.L. Wheeler and M. Diwan and K. Driesslein and L. Covolan and C.R. Butson and J.N. Nobrega", title = "Deep brain stimulation in rats: Different targets induce similar antidepressant-like effects but influence different circuits", journal = "Neurobiology of Disease", volume = "71", pages = "205--214", year = "2014", publisher = "Elsevier Inc.", month = "August", issn = "1095-953X", keywords = "Anterior capsule, Connectivity, Deep brain stimulation, Depression, Nucleus accumbens, Prefrontal cortex", url = "https://publications.utah.edu/publications/Ham2014a/Hamani_NeurobioDisease2014.pdf", } @Book{SCI:Han2014a, author = "C.D. Hansen and M. Chen and C.R. Johnson and A.E. Kaufman and H. Hagen (Eds.)", title = "Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization", title_url = "http://www.springer.com/mathematics/computational+science+engineering/book/978-1-4471-6496-8", year = "2014", series = "Mathematics and Visualization", publisher = "Springer", isbn = "978-1-4471-6496-8", } @Article{SCI:Hao2014a, author = "X. Hao and K. Zygmunt and R.T. Whitaker and P.T. Fletcher", title = "Improved Segmentation of White Matter Tracts with Adaptive Riemannian Metrics", journal = "Medical Image Analysis", volume = "18", number = "1", pages = "161--175", year = "2014", month = "Jan", keywords = "Conformal factor, Diffusion tensor imaging, Front-propagation, Geodesic, Riemannian manifold", url = "https://publications.utah.edu/publications/hao14/Hao_MIA2014.pdf", } @Article{SCI:Hin2014a, author = " J. Hinkle and P.T. Fletcher and S. Joshi ", title = "Intrinsic Polynomials for Regression on Riemannian Manifolds", journal = "Journal of Mathematical Imaging and Vision", pages = "1-21", year = "2014", url = "https://publications.utah.edu/publications/Hin2014a/Hinkle_JMIV2014.pdf", } @Article{SCI:Hol2014a, author = "T. Hollt and A. Magdy and P. Zhan and G. Chen and G. Gopalakrishnan and I. Hoteit and C.D. Hansen and M. Hadwiger", title = "Ovis: A Framework for Visual Analysis of Ocean Forecast Ensembles", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "PP", number = "99", pages = "1", year = "2014", keywords = "Ensemble Visualization, Ocean Visualization, Ocean Forecast, Risk Estimation", url = "https://publications.utah.edu/publications/Hol2014a/Hollt_Ovis2014.pdf", } @Article{SCI:Hoy2014a, author = "J.B. Hoying and U. Utzinger and J.A. Weiss", title = "Formation of microvascular networks: role of stromal interactions directing angiogenic growth", journal = "Microcirculation", volume = "21", number = "4", pages = "278--289", year = "2014", month = "May", keywords = "angiogenesis, matrix, neovessel, remodeling, stroma", url = "https://publications.utah.edu/publications/Hoy2014a/Hoying_MicroCirc2014.pdf", } @Article{SCI:Hum2014a, author = "A. Humphrey and Q. Meng and M. Berzins and D. Caminha B.de Oliveira and Z. Rakamaric and G. Gopalakrishnan", title = "Systematic Debugging Methods for Large-Scale {HPC} Computational Frameworks", journal = "Computing in Science Engineering", volume = "16", number = "3", pages = "48--56", year = "2014", month = "May", issn = "1521-9615", keywords = "Computational Modeling and Frameworks, Parallel Programming, Reliability, Debugging Aids", url = "https://publications.utah.edu/publications/Hum2014a/Humphrey_CISE_Uintah_May_June_2014.pdf", } @Article{SCI:Joo2014a, author = "Y. Joon Ahn and C. Hoffmann and P. Rosen", title = "Geometric constraints on quadratic Bézier curves using minimal length and energy", journal = "Journal of Computational and Applied Mathematics", volume = "255", pages = "887--897", year = "2014", url = "https://publications.utah.edu/publications/joon14/Ahn.2014.JCAM.pdf", } @Article{SCI:Kno2014a, author = "A. Knoll and I. Wald and P. Navratil and A. Bowen and K. Reda and M. E. Papka and K. Gaither", title = "RBF Volume Ray Casting on Multicore and Manycore CPUs", journal = "Computer Graphics Forum", volume = "33", number = "3", pages = "71--80", year = "2014", editor = "H. Carr and P. Rheingans and H. Schumann", publisher = "Wiley-Blackwell", month = "June", url = "https://publications.utah.edu/publications/Kno2014a/bnsview-sph.pdf", } @InProceedings{SCI:Kum2014a, author = "S. Kumar and C. Christensen and P.-T. Bremer and E. Brugger and V. Pascucci and J. Schmidt and M. Berzins and H. Kolla and J. Chen and V. Vishwanath and P. Carns and R. Grout", title = "Fast Multi-Resolution Reads of Massive Simulation Datasets", booktitle = "Proceedings of the International Supercomputing Conference {ISC'14}", year = "2014", month = "June", location = "Leipzig, Germany", url = "https://publications.utah.edu/publications/Kum2014a/KumarISC2014.pdf", } @InProceedings{SCI:Kum2014b, author = "S. Kumar and J. Edwards and P.-T. Bremer and A. Knoll and C. Christensen and V. Vishwanath and P. Carns and J.A. Schmidt and V. Pascucci", title = "Efficient I/O and storage of adaptive-resolution data", booktitle = "Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis", pages = "413--423", year = "2014", publisher = "IEEE Press", url = "https://publications.utah.edu/publications/Kum2014b/Kumar_EfficientIO2014.pdf", } @InProceedings{SCI:Lan2014a, author = "A.G. Landge and V. Pascucci and A. Gyulassy and J.C. Bennett and H. Kolla and J. Chen and P.-T. Bremer", title = "In-situ feature extraction of large scale combustion simulations using segmented merge trees", booktitle = "Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis ({SC} 2014)", pages = "1020--1031", year = "2014", publisher = "IEEE Press", address = "Piscataway, NJ, USA", location = "New Orleans, Louisana", isbn = "978-1-4799-5500-8", url = "https://publications.utah.edu/publications/Lan2014a/Landge_SC2014.pdf", } @Article{SCI:Lew2014a, author = "J.D. Lewis and A.C. Evans and J.R. Pruett and K. Botteron and L. Zwaigenbaum and A. Estes and G. Gerig and L. Collins and P. Kostopoulos and R. McKinstry and S. Dager and S. Paterson and R. Schultz and M. Styner and H. Hazlett and J. Piven and IBIS network", title = "Network inefficiencies in autism spectrum disorder at 24 months", journal = "Translational Psychiatry", volume = "4", number = "5", pages = "e388", year = "2014", publisher = "Nature Publishing Group", month = "May", keywords = "autism, infant siblings, connectivity, network analysis, efficiency", url = "https://publications.utah.edu/publications/Lew2014a/Lewis_TranslPsy2014.pdf", } @Article{SCI:Lex2014a, author = "A. Lex and N. Gehlenborg and H. Strobelt and R. Vuillemot and and H. Pfister", title = "UpSet: Visualization of Intersecting Sets", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '14)", volume = "20", number = "12", pages = "1983--1992", year = "2014", issn = "1077-2626", url = "https://publications.utah.edu/publications/Lex2014a/2014_infovis_upset.pdf", } @Article{SCI:Liu2014a, author = "W. Liu and S.P. Awate and J.S. Anderson and P.T. Fletcher", title = "A functional network estimation method of resting-state {fMRI} using a hierarchical Markov random field", title_url = "http://www.sciencedirect.com/science/article/pii/S1053811914004698", journal = "NeuroImage", volume = "100", pages = "520--534", year = "2014", issn = "1053-8119", keywords = "Resting-state functional MRI, Segmentation, Functional connectivity, Hierarchical Markov random field, Bayesian", url = "https://publications.utah.edu/publications/Liu2014a/Liu_Neuroimage2014.pdf", } @TechReport{SCI:Liu2014b, author = "Shusen Liu and Bei Wang and J.J. Thiagarajan and P.-T. Bremer and V. Pascucci", title = "Visual Exploration of High-Dimensional Data: Subspace Analysis through Dynamic Projections", number = "UUSCI-2014-003", year = "2014", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "High-dimensional data, Subspace, Dynamic projection", url = "https://publications.utah.edu/publications/Liu2014b/UUSCI-2014-003.pdf", } @Article{SCI:Liu2014c, author = "S. Liu and Bei Wang and P.-T. Bremer and V. Pascucci", title = "Distortion-Guided Structure-Driven Interactive Exploration of High-Dimensional Data", journal = "Computer Graphics Forum", volume = "33", number = "3", pages = "101--110", year = "2014", publisher = "Wiley-Blackwell", month = "June", url = "https://publications.utah.edu/publications/Liu2014c/Liu_Distortion_Interactive_2014.pdf", } @InProceedings{SCI:Liu2014d, author = "Shusen Liu and Bei Wang and J.J. Thiagarajan and P.-T. Bremer and V. Pascucci", title = "Multivariate Volume Visualization through Dynamic Projections", booktitle = "Proceedings of the {IEEE} Symposium on Large Data Analysis and Visualization ({LDAV})", year = "2014", url = "https://publications.utah.edu/publications/Liu2014d/Liu_paper102.pdf", } @Article{SCI:Liu2014e, author = "T. Liu and C. Jones and M. Seyedhosseini and T. Tasdizen", title = "A modular hierarchical approach to 3D electron microscopy image segmentation", journal = "Journal of Neuroscience Methods", volume = "226", number = "15", pages = "88--102", year = "2014", month = "April", keywords = "Image segmentation, Electron microscopy, Hierarchical segmentation, Semi-automatic segmentation, Neuron reconstruction", url = "https://publications.utah.edu/publications/Liu2014e/Liu_JNM2014.pdf", } @TechReport{SCI:Mal2014a, author = "D. Maljovec and Bei Wang and J. Moeller and V. Pascucci", title = "Topology-Based Active Learning", number = "UUSCI-2014-001", year = "2014", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/Mal2014a/UUSCI-2014-001.pdf", } @InProceedings{SCI:Mal2014b, author = "D. Maljovec and S. Liu and Bei Wang and V. Pascucci and P.-T. Bremer and D. Mandelli and C. Smith", title = "Analyzing Simulation-Based {PRA} Data Through Clustering: a {BWR} Station Blackout Case Study", booktitle = "Proceedings of the Probabilistic Safety Assessment & Management conference ({PSAM})", year = "2014", keywords = "{PRA}, computational topology, clustering, high-dimensional analysis", url = "https://publications.utah.edu/publications/Mal2014b/Maljovec_BWR_Study_2014.pdf", } @InProceedings{SCI:Man2014a, author = "D. Mandelli and C. Smith and T. Riley and J. Nielsen and J. Schroeder and C. Rabiti and A. Alfonsi and J. Cogliati and R. Kinoshita and V. Pascucci and Bei Wang and D. Maljovec", title = "Overview of New Tools to Perform Safety Analysis: {BWR} Station Black Out Test Case", booktitle = "Proceedings of the Probabilistic Safety Assessment & Management conference ({PSAM})", year = "2014", url = "https://publications.utah.edu/publications/Man2014a/Mandelli_Overview_Tools_2014.pdf", } @Article{SCI:Mcg2014a, author = "C. McGann and N. Akoum and A. Patel and E. Kholmovski and P. Revelo and K. Damal and B. Wilson and J. Cates and A. Harrison and R. Ranjan and N.S. Burgon and T. Greene and D. Kim and E.V. Dibella and D. Parker and R.S. MacLeod and N.F. Marrouche", title = "Atrial fibrillation ablation outcome is predicted by left atrial remodeling on {MRI}", journal = "Circ Arrhythm Electrophysiol", volume = "7", number = "1", pages = "23--30", year = "2014", } @Article{SCI:Mci2014a, author = "G. McInerny and M. Chen and R. Freeman and D. Gavaghan and M.D. Meyer and F. Rowland and D. Spiegelhalter and M. Steganer and G. Tessarolo and J. Hortal", title = "Information Visualization for Science and Policy: Engaging Users and Avoiding Bias", journal = "Trends in Ecology & Evolution", volume = "29", number = "3", pages = "148--157", year = "2014", url = "https://publications.utah.edu/publications/Mci2014a/McInerny_InfoVisForScienceAndPolicy2014.pdf", } @Article{SCI:Mck2014a, author = "S. McKenna and D. Mazur and J. Agutter and M.D. Meyer", title = "Design Activity Framework for Visualization Design", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", year = "2014", keywords = "Design, frameworks, process, cybersecurity, nested model, decisions, models, evaluation, visualization", url = "https://publications.utah.edu/publications/Mck2014a/McKenna_TVCG2014.pdf", } @Article{SCI:Men2014b, author = "Q. Meng and M. Berzins", title = "Scalable large-scale fluid-structure interaction solvers in the Uintah framework via hybrid task-based parallelism algorithms", journal = "Concurrency and Computation: Practice and Experience", volume = "26", number = "7", pages = "1388--1407", year = "2014", month = "May", keywords = "MPI, threads, Uintah, many core, lock free, fluid-structure interaction, c-safe", url = "https://publications.utah.edu/publications/Men2014b/Meng_CCPE2013.pdf", } @PhdThesis{SCI:Men2014c, author = "Qingyu Meng", title = "Large-Scale Distributed Runtime System for {DAG}-Based Computational Framework", year = "2014", school = "School of Computing, University of Utah", month = "August", note = "Ph.D. in Computer Science, advisor Martin Berzins", url = "https://publications.utah.edu/publications/Men2014c/Qingyu_Meng_PhDThesis2014.pdf", } @Article{SCI:Mer2014a, author = "J. Mercer and B. Pandian and A. Lex and N. Bonneel and and H. Pfister", title = "Mu-8: Visualizing Differences between Proteins and their Families ", journal = "BMC Proceedings", volume = "8", number = "Suppl 2", pages = "S5", year = "2014", month = "Aug", issn = "1753-6561", url = "https://publications.utah.edu/publications/Mer2014a/2014_bmc_mu8.pdf", } @Article{SCI:Mey2014a, author = "M.D. Meyer and M. Sedlmair and P.S. Quinan and T. Munzner", title = "The Nested Blocks and Guidelines Model", journal = "Journal of Information Visualization, Special Issue on Evaluation ({BELIV})", year = "2014", url = "https://publications.utah.edu/publications/Mey2014a/Meyer_BELIV2014.pdf", } @Article{SCI:Mil2014a, author = "M. Milanič and V. Jazbinšek and R.S. MacLeod and D.H. Brooks and R. Hren", title = "Assessment of regularization techniques for electrocardiographic imaging", journal = "Journal of electrocardiology", volume = "47", number = "1", pages = "20--28", year = "2014", url = "https://publications.utah.edu/publications/Mil2014a/Melanic_JEC2014.pdf", } @Article{SCI:Mir2014a, author = "M. Mirzargar and R. Whitaker and R. M. Kirby", title = "Curve Boxplot: Generalization of Boxplot for Ensembles of Curves", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "20", number = "12", pages = "2654-63", year = "2014", publisher = "IEEE", month = "December", url = "https://publications.utah.edu/publications/Mir2014a/curve-boxplot-2.pdf", } @InProceedings{SCI:Mur2014a, author = "P. Muralidharan and J. Fishbaugh and H.J. Johnson and S. Durrleman and J.S. Paulsen and G. Gerig and P.T. Fletcher", title = "Diffeomorphic Shape Trajectories for Improved Longitudinal Segmentation and Statistics", booktitle = "Proceedings of Medical Image Computing and Computer Assisted Intervention ({MICCAI})", year = "2014", url = "https://publications.utah.edu/publications/Mur2014a/Muralidharan_MICCAI2014.pdf", } @Article{SCI:Nei2014a, author = "J.A. Nielsen and B.A. Zielinski and P.T. Fletcher and A.L. Alexander and N. Lange and E.D. Bigler and J.E. Lainhart and J.S. Anderson", title = "Abnormal lateralization of functional connectivity between language and default mode regions in autism", journal = "Molecular Autism", volume = "5", number = "1", pages = "8", year = "2014", keywords = "brain lateralization, brain asymmetry, autism, autism spectrum disorder, language, functional magnetic resonance imaging, functional connectivity", url = "https://publications.utah.edu/publications/Nei2014a/Neilsen_MolecularAutism2014.pdf", } @Article{SCI:Nes2014a, author = "K.A. Nestor and J.D. Jones and C.R. Butson and T. Morishita and C.E. Jacobson and D.A. Peace and D. Chen and K.D. Foote and M.S. Okun", title = "Coordinate-based lead location does not predict Parkinson's disease deep brain stimulation outcome", journal = "PloS One", volume = "9", number = "4", pages = "e93524", year = "2014", month = "January", issn = "1932-6203", url = "https://publications.utah.edu/publications/Nes2014a/Nestor_PlosOne2014.pdf", } @Article{SCI:Ogu2014a, author = "I. Oguz and M. Farzinfar and J. Matsui and F. Budin and Z. Liu and G. Gerig and H.J. Johnson and M.A. Styner", title = "{DTIPrep:} Quality Control of Diffusion-Weighted Images", journal = "Frontiers in Neuroinformatics", volume = "8", number = "4", year = "2014", keywords = "diffusion MRI, Diffusion Tensor Imaging, Quality control, Software, open-source, preprocessing", url = "https://publications.utah.edu/publications/oguz14/Oguz_FNINF2014.pdf", } @InProceedings{SCI:Oli2014a, author = "D.C.B. de Oliveira and A. Humphrey and Q. Meng and Z. Rakamaric and M. Berzins and G. Gopalakrishnan", title = "Systematic Debugging of Concurrent Systems Using Coalesced Stack Trace Graphs", booktitle = "Proceedings of the 27th International Workshop on Languages and Compilers for Parallel Computing ({LCPC})", year = "2014", month = "September", url = "https://publications.utah.edu/publications/Oli2014a/Oliveira_LCPC2014.pdf", } @Article{SCI:Par2014a, author = "B.R. Parmar and T.R. Jarrett and N.S. Burgon and E.G. Kholmovski and N.W. Akoum and N. Hu and R.S. Macleod and N.F. Marrouche and R. Ranjan", title = "Comparison of Left Atrial Area Marked Ablated in Electroanatomical Maps with Scar in MRI", journal = "Journal of Cardiovascular Electrophysiology", year = "2014", keywords = "atrial fibrillation, magnetic resonance imaging, radiofrequency ablation", url = "https://publications.utah.edu/publications/Par2014a/Parmar_jce12357.pdf", } @Article{SCI:Par2014b, author = "Christian Partl and Alexander Lex and Marc Streit and Hendrik Strobelt and Anne-Mai Wasserman and Hanspeter Pfister and and Dieter Schmalstieg", title = "ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery", journal = "IEEE Transactions on Visualization and Computer Graphics (VAST '14)", volume = "20", number = "12", pages = "1883--1892", year = "2014", issn = "1077-2626", url = "https://publications.utah.edu/publications/Par2014b/2014_vast_contour.pdf", } @Article{SCI:Per2014a, author = "A. J. Perez and M. Seyedhosseini and T. J. Deerinck and E. A. Bushong and S. Panda and T. Tasdizen and M. H. Ellisman", title = "A workflow for the automatic segmentation of organelles in electron microscopy image stacks", journal = "Frontiers in Neuroanatomy", volume = "8", number = "126", year = "2014", } @Article{SCI:Per2014b, author = "A. Perez and M. Seyedhosseini and T. Tasdizen and M. Ellisman", title = "Automated workflows for the morphological characterization of organelles in electron microscopy image stacks (LB72)", journal = "The FASEB Journal", volume = "28", number = "1 Supplement LB72", year = "2014", month = "April", } @InProceedings{SCI:Ram2014a, author = "N. Ramesh and T. Tasdizen", title = "Cell tracking using particle filters with implicit convex shape model in 4D confocal microscopy images", booktitle = "2014 IEEE International Conference on Image Processing (ICIP)", year = "2014", publisher = "IEEE", month = "Oct", url = "https://publications.utah.edu/publications/Ram2014a/07025089.pdf", } @InProceedings{SCI:Rou2014a, author = "F. Rousset and C. Vachet and C. Conlin and M. Heilbrun and J.L. Zhang and V.S. Lee and G. Gerig", title = "Semi-automated application for kidney motion correction and filtration analysis in {MR} renography", booktitle = "Proceeding of the 2014 Joint Annual Meeting {ISMRM-ESMRMB}", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/rousset14/ISMRM_2014_KidneyMotionCorrection_Abstract.pdf", } @InProceedings{SCI:Sad2014a, author = "N. Sadeghi and J.H. Gilmore and W. Lin and G. Gerig", title = "Normative Modeling of Early Brain Maturation from Longitudinal {DTI} Reveals Twin-Singleton Differences", booktitle = "Proceeding of the 2014 Joint Annual Meeting {ISMRM-ESMRMB}", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/sadeghi14/sadeghi_ISMRM2014_abstract7869.pdf", } @InProceedings{SCI:Sad2014b, author = "N. Sadeghi and P.T. Fletcher and M. Prastawa and J.H. Gilmore and G. Gerig", title = "Subject-specific prediction using nonlinear population modeling: Application to early brain maturation from {DTI}", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention ({MICCAI} 2014)", year = "2014", url = "https://publications.utah.edu/publications/Sad2014b/Sadeghi_MICCAI2014.pdf", } @InProceedings{SCI:San2014a, author = "A.R. Sanderson", title = "An Alternative Formulation of Lyapunov Exponents for Computing Lagrangian Coherent Structures", booktitle = "Proceedings of the 2014 {IEEE} Pacific Visualization Symposium ({PacificVis})", year = "2014", location = "Yokahama Japan", url = "https://publications.utah.edu/publications/San2014a/Sanderson_PacificVis2014_ShortNote.pdf", } @Article{SCI:Sey2014a, author = "M. Seyedhosseini and T. Tasdizen", title = "Disjunctive normal random forests", journal = "Pattern Recognition", year = "2014", month = "September", keywords = "Random forest, Decision tree, Classifier, Supervised learning, Disjunctive normal form", } @Article{SCI:Sey2014b, author = "M. Seyedhosseini and T. Tasdizen", title = "Scene Labeling with Contextual Hierarchical Models", journal = "CoRR", volume = "abs/1402.0595", year = "2014", url = "https://publications.utah.edu/publications/Sey2014b/Seyedhosseini_ArXiv2014.pdf", } @InProceedings{SCI:Sha2014a, author = "A. Sharma and P.T. Fletcher and J.H. Gilmore and M.L. Escolar and A. Gupta and M. Styner and G. Gerig", title = "Parametric Regression Scheme for Distributions: Analysis of {DTI} Fiber Tract Diffusion Changes in Early Brain Development", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", keywords = "linear regression, distribution-valued data, spatiotemporal growth trajectory, DTI, early neurodevelopment", url = "https://publications.utah.edu/publications/sharma14/Sharma_ISBI2014.pdf", } @InProceedings{SCI:Sin2014a, author = "N.P. Singh and J. Hinkle and S. Joshi and P.T. Fletcher", title = "An Efficient Parallel Algorithm for Hierarchical Geodesic Models in Diffeomorphisms", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", keywords = "{LDDMM}, {HGM}, Vector Momentum, Diffeomorphisms, Longitudinal Analysis", url = "https://publications.utah.edu/publications/singh14/Singh_ISBI2014.pdf", } @InProceedings{SCI:Skr2014a, author = "P. Skraba and Bei Wang and G. Chen and P. Rosen", title = "{2D} Vector Field Simplification Based on Robustness", booktitle = "Proceedings of the 2014 {IEEE} Pacific Visualization Symposium", year = "2014", series = "{PacificVis}", note = "Awarded Best Paper!", keywords = "vector field, topology-based techniques, flow visualization", url = "https://publications.utah.edu/publications/skraba14/Skraba_PV2014.pdf", } @InCollection{SCI:Skr2014b, author = "P. Skraba and Bei Wang", title = "Interpreting Feature Tracking Through the Lens of Robustness", booktitle = "Mathematics and Visualization", pages = "19-37", year = "2014", publisher = "Springer", url = "https://publications.utah.edu/publications/Skr2014b/Feature_Tracking_Robustness_BeiWang_2013.pdf", } @InProceedings{SCI:Skr2014c, author = "P. Skraba and Bei Wang", title = "Approximating Local Homology from Samples", booktitle = "Proceedings 25th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA)", pages = "174-192", year = "2014", url = "https://publications.utah.edu/publications/Skr2014c/Sampling_LocalHomology_BeiWang_2014.pdf", } @Conference{SCI:Sto2014a, author = "R. Stoll and E. Pardyjak and J.J. Kim and T. Harman and A.N. Hayati", title = "An inter-model comparison of three computation fluid dynamics techniques for step-up and step-down street canyon flows", booktitle = "ASME FEDSM/ICNMM symposium on urban fluid mechanics", year = "2014", month = "August", } @Article{SCI:Str2014a, author = "M. Streit and A. Lex and S. Gratzl and C. Partl and D. Schmalstieg and H. Pfister and P. J. Park and and N. Gehlenborg", title = "Guided visual exploration of genomic stratifications in cancer", journal = "Nature Methods", volume = "11", number = "9", pages = "884--885", year = "2014", month = "Sep", issn = "1548-7091", url = "https://publications.utah.edu/publications/Str2014a/nmeth.3088.pdf", } @TechReport{SCI:Sum2014a, author = "B. Summa and A.A. Gooch and G. Scorzelli and V. Pascucci", title = "Towards Paint and Click: Unified Interactions for Image Boundaries", number = "UUSCI-2014-004", year = "2014", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", month = "December", url = "https://publications.utah.edu/publications/Sum2014a/UUSCI-2014-004.pdf", } @InCollection{SCI:Tas2014a, author = "T. Tasdizen and M. Seyedhosseini and T. Liu and C. Jones and E. Jurrus", title = "Image Segmentation for Connectomics Using Machine Learning", booktitle = "Computational Intelligence in Biomedical Imaging", pages = "237--278", year = "2014", editor = "Suzuki, Kenji", publisher = "Springer New York", isbn = "978-1-4614-7244-5", } @Article{SCI:Tur2014a, author = "C. Turkay and A. Lex and M. Streit and H. Pfister and and H. Hauser", title = "Characterizing Cancer Subtypes using Dual Analysis in Caleydo", journal = "IEEE Computer Graphics and Applications", volume = "34", number = "2", pages = "38--47", year = "2014", month = "March", issn = "0272-1716", url = "https://publications.utah.edu/publications/Tur2014a/2014_cga_characterizing.pdf", } @Article{SCI:Und2014a, author = "C.J. Underwood and L.T. Edgar and J.B. Hoying and J.A. Weiss", title = "Cell-generated traction forces and the resulting matrix deformation modulate microvascular alignment and growth during angiogenesis", journal = "American Journal of Physiology: Heart and Circulatory Physiology", volume = "307", number = "H152-H164", year = "2014", keywords = "angiogenesis, deformation, image analysis, morphometry, orientation, strain", url = "https://publications.utah.edu/publications/Und2014a/Underwood_AJPHCP2014.pdf", } @InProceedings{SCI:Vac2014a, author = "C. Vachet and H.C. Hazlett and J. Piven and G. Gerig", title = "{4D} Modeling of Infant Brain Growth in Down's Syndrome and Controls from longitudinal {MRI}", booktitle = "Proceeding of the 2014 Joint Annual Meeting {ISMRM-ESMRMB}", pages = "(accepted)", year = "2014", url = "https://publications.utah.edu/publications/vachet14/ISMRM_DS_brain_growth_submitted.pdf", } @InProceedings{SCI:Var2014a, author = "A. Vardhan and M. Prastawa and C. Vachet and J. Piven and G. Gerig", title = "Characterizing growth patterns in longitudinal {MRI} using image contrast", booktitle = "Proceedings of Medical Imaging 2014: Image Processing", year = "2014", url = "https://publications.utah.edu/publications/vardhan14/Vardhan_MedImg2014.pdf", } @InProceedings{SCI:Var2014b, author = "A. Vardhan and N. Sadeghi and C. Vachet and J. Piven and G. Gerig", title = "Joint Longitudinal Modeling of Brain Appearance in Multimodal {MRI} for the Characterization of Early Brain Developmental Processes", booktitle = "Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data ({STIA'14}) , {LNCS}. {MICCAI'14}", year = "2014", publisher = "Springer Verlag", month = "June", url = "https://publications.utah.edu/publications/Var2014b/Vardhan_STIA2014.pdf", } @Article{SCI:Ver2014a, author = "A.R. Verde and F. Budin and J.-B. Berger and A. Gupta and M. Farzinfar and A. Kaiser and M. Ahn and H. Johnson and J. Matsui and H.C. Hazlett and A. Sharma and C. Goodlett and Y. Shi and S. Gouttard and C. Vachet and J. Piven and H. Zhu and G. Gerig and M. Styner", title = "UNC-Utah NA-MIC framework for DTI fiber tract analysis", journal = "Frontiers in Neuroinformatics", volume = "7", number = "51", year = "2014", month = "January", keywords = "neonatal neuroimaging, white matter pathways, magnetic resonance imaging, diffusion tensor imaging, diffusion imaging quality control, DTI atlas building", url = "https://publications.utah.edu/publications/verde14/Verde_FNINF2014.pdf", } @InProceedings{SCI:Wan2014a, author = "Bo Wang and W. Liu and M. Prastawa and A. Irimia and P.M. Vespa and J.D. van Horn and P.T. Fletcher and G. Gerig", title = "{4D} Active Cut: An Interactive Tool for Pathological Anatomy Modeling", booktitle = "Proceedings of the 2014 {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "(accepted)", year = "2014", keywords = "Active learning, graph cuts, longitudinal MRI, Markov Random Fields, semi-supervised learning", url = "https://publications.utah.edu/publications/wang14/Wang_ISBI2014_acCut.pdf", } @Article{SCI:Wan2014b, author = "J. Wang and C. Vachet and A. Rumple and S. Gouttard and C. Ouzie and E. Perrot and G. Du and X. Huang and G. Gerig and M.A. Styner", title = "Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline", journal = "Frontiers in Neuroinformatics", volume = "8", number = "7", year = "2014", keywords = "segmentation, Registration, MRI, Atlas, Brain, Insight Toolkit", url = "https://publications.utah.edu/publications/wang14/Wang_FNINF2014.pdf", } @InProceedings{SCI:Wan2014c, author = "Y. Wan and H. Otsuna and K. Kwan and C.D. Hansen", title = "Real-Time Dense Nucleus Selection from Confocal Data", booktitle = "Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine", year = "2014", url = "https://publications.utah.edu/publications/Wan2014c/Wan_VCBM2014.pdf", } @InProceedings{SCI:Wid2014a, author = "W. Widanagamaachchi and P.-T. Bremer and C. Sewell and L.-T. Lo; J. Ahrens and V. Pascucci", title = "Data-Parallel Halo Finding with Variable Linking Lengths", booktitle = "Proceedings of the 2014 {IEEE} 4th Symposium on Large Data Analysis and Visualization ({LDAV})", pages = "27--34", year = "2014", month = "November", url = "https://publications.utah.edu/publications/Wid2014a/Widanagamaachchi_LDAV2014.pdf", } @InProceedings{SCI:Yu2014a, author = "Y.-Y. Yu and P.T. Fletcher and S.P. Awate", title = "Hierarchical Bayesian Modeling, Estimation, and Sampling for Multigroup Shape Analysis", booktitle = "Proceedings of Medical Image Computing and Computer Assisted Intervention ({MICCAI})", year = "2014", url = "https://publications.utah.edu/publications/Yu2014a/Yu_MICCAI2014.pdf", } @InProceedings{SCI:Zha2014a, author = "M. Zhang and P.T. Fletcher", title = "Bayesian Principal Geodesic Analysis in Diffeomorphic Image Registration", booktitle = "Proceedings of Medical Image Computing and Computer Assisted Intervention ({MICCAI})", year = "2014", url = "https://publications.utah.edu/publications/Zha2014a/Zhang_MICCAI2014.pdf", } @Article{SCI:Zho2014a, author = "L. Zhou and C.D. Hansen", title = "GuideME: Slice-guided Semiautomatic Multivariate Exploration of Volumes", journal = "Computer Graphics Forum", volume = "33", number = "3", pages = "151--160", year = "2014", publisher = "Wiley-Blackwell", month = "jun", url = "https://publications.utah.edu/publications/Zho2014a/Zhou_EuroVis2014.pdf", } @Article{SCI:Zie2014a, author = "B.A. Zielinski and M.B.D. Prigge and J.A. Nielsen and A.L. Froehlich and T.J. Abildskov and J.S. Anderson and P.T. Fletcher and K.M. Zygmunt and B.G. Travers and N. Lange and A.L. Alexander and E.D. Bigler and J.E. Lainhart", title = "Longitudinal changes in cortical thickness in autism and typical development", journal = "Brain", volume = "137", number = "6", pages = "1799--1812", year = "2014", editor = "Dimitri M. Kullmann", url = "https://publications.utah.edu/publications/Zie2014a/Zielinski_Brain2014.pdf", } @Article{SCI:Abd2013a, author = "A. Abdul-Rahman and J. Lein and K. Coles and E. Maguire and M.D. Meyer and M. Wynne and C.R. Johnson and A. Trefethen and M. Chen", title = "Rule-based Visual Mappings - with a Case Study on Poetry Visualization", journal = "Proceedings of the 2013 Eurographics Conference on Visualization (EuroVis)", volume = "32", number = "3", pages = "381--390", year = "2013", month = "June", url = "https://publications.utah.edu/publications/Abd2013a/Rahman_EuroVis2013.pdf", } @Article{SCI:Abr2013a, author = "C.L. Abraham and S.A. Maas and J.A. Weiss and B.J. Ellis and C.L. Peters and A.E. Anderson", title = "A new discrete element analysis method for predicting hip joint contact stresses", journal = "Journal of Biomechanics", volume = "46", number = "6", pages = "1121--1127", year = "2013", url = "https://publications.utah.edu/publications/abraham13/Abraham_jbme_2013.pdf", } @InProceedings{SCI:And2013a, author = "E.W. Anderson and C. Chong and G.A. Preston and C.T. Silva", title = "Discovering and Visualizing Patterns in {EEG} Data", booktitle = "Proceedings of the 2013 {IEEE} Pacific Visualization Symposium ({PacificVis})", pages = "105--112", year = "2013", url = "https://publications.utah.edu/publications/anderson13/EGI_Anderson_PacVis.pdf", } @Article{SCI:And2013b, author = "J.S. Anderson and J.A. Nielsen and M.A. Ferguson and M.C. Burback and E.T. Cox and L. Dai and G. Gerig and J.O. Edgin and J.R. Korenberg", title = "Abnormal brain synchrony in Down Syndrome", title_url = "http://www.sciencedirect.com/science/article/pii/S2213158213000624", journal = "NeuroImage: Clinical", volume = "2", pages = "703--715", year = "2013", issn = "2213-1582", url = "https://publications.utah.edu/publications/anderson13/Anderson_NeuroImageClinical2013.pdf", } @Article{SCI:Bec2013a, author = "J. Beckvermit and J. Peterson and T. Harman and S. Bardenhagen and C. Wight and Q. Meng and M. Berzins", title = "Multiscale Modeling of Accidental Explosions and Detonations", journal = "Computing in Science and Engineering", volume = "15", number = "4", pages = "76--86", year = "2013", keywords = "uintah, c-safe, accidents, explosions, military computing, risk analysis", url = "https://publications.utah.edu/publications/Bec2013a/Beckvermit_ModelingExplosiveswithUintah2013_2.pdf", } @InProceedings{SCI:Ber2013a, author = "M. Berzins and J. Schmidt and Q. Meng and A. Humphrey", title = "Past, Present, and Future Scalability of the Uintah Software", booktitle = "Proceedings of the Blue Waters Extreme Scaling Workshop 2012", pages = "Article No.: 6", year = "2013", keywords = "netl, Uintah, parallelism, scalability, adaptive mesh refinement, linear equations", url = "https://publications.utah.edu/publications/berzins12/BerzinsBWW2012.pdf", } @Article{SCI:Ber2013b, author = "M. Berzins", title = "Data and Range-Bounded Polynomials in ENO Methods", journal = "Journal of Computational Science", volume = "4", number = "1-2", pages = "62--70", year = "2013", url = "https://publications.utah.edu/publications/berzins12/Berzins_ammcs11v7.pdf", } @Article{SCI:Ber2013c, author = "N.M. Bertagnolli and J.A. Drake and J.M. Tennessen and O. Alter", title = "{SVD} Identifies Transcript Length Distribution Functions from {DNA} Microarray Data and Reveals Evolutionary Forces Globally Affecting {GBM} Metabolism", journal = "Public Library of Science (PLoS) One", volume = "8", number = "11", pages = "article e78913", year = "2013", month = "November", url = "https://publications.utah.edu/publications/bertagnolli13/Bertagnolli_PLoSOne2013.pdf", } @Article{SCI:Bha2013a, author = "H. Bhatia and G. Norgard and V. Pascucci and P.-T. Bremer", title = "The Helmholtz-Hodge Decomposition - A Survey", journal = "IEEE Transactions on Visualization and Computer Graphics (TVCG)", volume = "19", number = "8", pages = "1386--1404", year = "2013", note = "Selected as Spotlight paper for August 2013 issue", url = "https://publications.utah.edu/publications/Bha2013a/Bhatia_TVCG2013.pdf", } @Article{SCI:Bha2013c, author = "H. Bhatia and G. Norgard and V. Pascucci and P.-T. Bremer", title = "Comments on the “Meshless Helmholtz-Hodge decomposition”", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "19", number = "3", pages = "527--528", year = "2013", url = "https://publications.utah.edu/publications/bhatia12/Bhatia_TVCG2012.pdf", } @InProceedings{SCI:Bro2013a, author = "C. Brownlee and T. Ize and C.D. Hansen", title = "Image-parallel Ray Tracing using OpenGL Interception", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization ({EGPGV} 2013)", pages = "65--72", year = "2013", url = "https://publications.utah.edu/publications/brownlee13/Brownlee_ESPGV2013.pdf", } @InProceedings{SCI:Bur2013a, author = "B. Burton and B. Erem and K. Potter and P. Rosen and C.R. Johnson and D. Brooks and R.S. Macleod", title = "Uncertainty Visualization in Forward and Inverse Cardiac Models", booktitle = "Computing in Cardiology {CinC}", pages = "57--60", year = "2013", issn = "2325-8861", url = "https://publications.utah.edu/publications/burton13/Burton_CinC2013.pdf", } @Article{SCI:But2013a, author = "C. Butson and G. Tamm and S. Jain and T. Fogal and J. Krüger", title = "Evaluation of Interactive Visualization on Mobile Computing Platforms for Selection of Deep Brain Stimulation Parameters", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "19", number = "1", pages = "108--117", year = "2013", month = "January", keywords = "Biomedical and Medical Visualization, Mobile and Ubiquitous Visualization, Computational Model, Clinical Decision Making, Parkinson’s Disease, SciDAC, ImageVis3D", url = "https://publications.utah.edu/publications/But2013a/Butson-DBS.pdf", } @Unpublished{SCI:Che2013a, author = "J. Chen and A. Choudhary and S. Feldman and B. Hendrickson and C.R. Johnson and R. Mount and V. Sarkar and V. White and D. Williams", title = "Synergistic Challenges in Data-Intensive Science and Exascale Computing", year = "2013", month = "March", note = "Summary Report of the Advanced Scientific Computing Advisory Committee (ASCAC) Subcommittee", url = "https://publications.utah.edu/publications/Che2013a/ASCAC_Data_Intensive_Computing_report_final.pdf", } @Article{SCI:Che2013b, author = "F. Chen and H. Obermaier and H. Hagen and B. Hamann and J. Tierny and V. Pascucci", title = "Topology analysis of time-dependent multi-fluid data using the Reeb graph", journal = "Computer Aided Geometric Design", volume = "30", number = "6", pages = "557--566", year = "2013", keywords = "Multi-phase fluid, Level set, Topology method, Point-based multi-fluid simulation", url = "https://publications.utah.edu/publications/Che2013b/Chen_CAGD2013.pdf", } @Article{SCI:Dad2013a, author = "A. Daducci and E.J. Canales-Rodriguez and M. Descoteaux and E. Garyfallidis and Y. Gur and Y.-C Lin and M. Mani and S. Merlet and M. Paquette and A. Ramirez-Manzanares and M. Reisert and P.R. Rodrigues and F. Sepehrband and E. Caruyer and J. Choupan and R. Deriche and M. Jacob and G. Menegaz and V. Prckovska and M. Rivera and Y. Wiaux and J.-P. Thiran", title = "Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion {MRI}", journal = "{IEEE} Transactions on Medical Imaging", volume = "33", number = "2", pages = "384--399", year = "2013", issn = "0278-0062", url = "https://publications.utah.edu/publications/daducci13/Daducci_TMI2013.pdf", } @InProceedings{SCI:Dat2013a, author = "M. Datar and I. Lyu and S. Kim and J. Cates and M.A. Styner and R.T. Whitaker", title = "Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention ({MICCAI} 2011)", volume = "16(Pt. 2)", pages = "19--26", year = "2013", } @Article{SCI:Dos2013a, author = "D.J. Dosdall and R. Ranjan and K. Higuchi and E. Kholmovski and N. Angel and L. Li and R.S. Macleod and L. Norlund and A. Olsen and C.J. Davies and N.F. Marrouche", title = "Chronic atrial fibrillation causes left ventricular dysfunction in dogs but not goats: experience with dogs, goats, and pigs", journal = "American Journal of Physiology: Heart and Circulatory Physiology", volume = "305", number = "5", pages = "H725--H731", year = "2013", month = "September", keywords = "animal models, chronic atrial fibrillation, fibrosis, heart failure, rapid atrial pacing", url = "https://publications.utah.edu/publications/Dos2013a/Dosdall_AJPHCP2013.pdf", } @Article{SCI:Dur2013a, author = "S. Durrleman and X. Pennec and A. Trouvé and J. Braga and G. Gerig and N. Ayache", title = "Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data", journal = "International Journal of Computer Vision (IJCV)", volume = "103", number = "1", pages = "22--59", year = "2013", month = "September", url = "https://publications.utah.edu/publications/Dur2013a/Durrleman_IJCV_2012_Longitudinal.pdf", } @Article{SCI:Dur2013b, author = "S. Durrleman and S. Allassonnière and S. Joshi", title = "Sparse adaptive parameterization of variability in image ensembles", journal = "International Journal of Computer Vision ({IJCV})", volume = "101", number = "1", pages = "161--183", year = "2013", url = "https://publications.utah.edu/publications/Dur2013b/Durrleman_IJCV_2013.pdf", } @Article{SCI:Edg2013a, author = "L.T. Edgar and S.C. Sibole and C.J. Underwood and J.E. Guilkey and J.A. Weiss", title = "A computational model of in vitro angiogenesis based on extracellular matrix fiber orientation", journal = "Computer Methods in Biomechanical and Biomedical Engineering", volume = "16", number = "7", pages = "790--801", year = "2013", url = "https://publications.utah.edu/publications/edgar13/Edgar_CMBBE2013.pdf", } @InProceedings{SCI:Elh2013a, author = "S. Elhabian and A. Farag and D. Tasman and W. Aboelmaaty and A. Farman", title = "Clinical Crowns Shape Reconstruction - An Image-based Approach", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "93--96", year = "2013", url = "https://publications.utah.edu/publications/elhabian13/Elhabian_ISBI2013.pdf", } @Article{SCI:Eli2013a, author = "J.T. Elison and J.J. Wolff and D.C. Heimer and S.J. Paterson and H. Gu and M. Styner and G. Gerig and J. Piven and the IBIS Network", title = "Frontolimbic neural circuitry at 6 months predicts individual differences in joint attention at 9 months", journal = "Developmental Science", volume = "16", number = "2", pages = "186--197", year = "2013", publisher = "Wiley-Blackwell", url = "https://publications.utah.edu/publications/elison13/Elison_DevScience2013.pdf", } @Article{SCI:Eli2013b, author = "J.T. Elison and S.J. Paterson and J.J. Wolff and J.S. Reznick and N.J. Sasson and H. Gu and K.N. Botteron and S.R. Dager and A.M. Estes and A.C. Evans and G. Gerig and H.C. Hazlett and R.T. Schultz and M. Styner and L. Zwaigenbaum and J. Piven for the IBIS Network", title = "White Matter Microstructure and Atypical Visual Orienting in 7 Month-Olds at Risk for Autism", journal = "American Journal of Psychiatry", volume = "AJP-12-09-1150.R2", year = "2013", month = "March", url = "https://publications.utah.edu/publications/elison12/Elison_AJP_submission_12112012.pdf", } @Article{SCI:Ere2013a, author = "B. Erem and J. Coll-Font and R.M. Orellana and P. Stovicek and D.H. Brooks and R.S. MacLeod", title = "Noninvasive reconstruction of potentials on endocardial surface from body surface potentials and CT imaging of partial torso", journal = "Journal of Electrocardiology", volume = "46", number = "4", pages = "e28", year = "2013", } @Article{SCI:Ere2013b, author = "B. Erem and R.M. Orellana and P. Stovicek and D.H. Brooks and R.S. MacLeod", title = "Improved averaging of multi-lead ECGs and electrograms", journal = "Journal of Electrocardiology", volume = "46", number = "4", pages = "e28", year = "2013", publisher = "Elsevier", month = "July", } @TechReport{SCI:Eti2013a, author = "T. Etiene and D. Jonsson and T. Ropinski and C. Scheidegger and J. Comba and L. Gustavo Nonato and R.M. Kirby and A. Ynnerman and C.T. Silva", title = "Verifying Volume Rendering Using Discretization Error Analysis", number = "UUSCI-2013-001", year = "2013", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "discretization errors, volume rendering, verifiable visualization", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2013-001.pdf", } @Article{SCI:Fak2013a, author = "K. Fakhar and E. Hastings and C.R. Butson and K.D. Foote and P. Zeilman and M.S. Okun", title = "Management of deep brain stimulator battery failure: battery estimators, charge density, and importance of clinical symptoms", journal = "PloS One", volume = "8", number = "3", pages = "e58665", year = "2013", month = "January", issn = "1932-6203", url = "https://publications.utah.edu/publications/Fak2013a/Fakhar_PlosOne2013.pdf", } @InProceedings{SCI:Far2013a, author = "M. Farzinfar and Y. Li and A.R. Verde and I. Oguz and G. Gerig and M.A. Styner", title = "{DTI} Quality Control Assessment via Error Estimation From Monte Carlo Simulations", booktitle = "Proceedings of {SPIE} 8669, Medical Imaging 2013: Image Processing", volume = "8669", year = "2013", url = "https://publications.utah.edu/publications/Far2013a/Farzinfar_SPIE2013.pdf", } @Article{SCI:Far2013b, author = "M. Farzinfar and I. Oguz and R.G. Smith and A.R. Verde and C. Dietrich and A. Gupta and M.L. Escolar and J. Piven and S. Pujol and C. Vachet and S. Gouttard and G. Gerig and S. Dager and R.C. McKinstry and S. Paterson and A.C. Evans and M.A. Styner", title = "Diffusion imaging quality control via entropy of principal direction distribution", title_url = "http://www.sciencedirect.com/science/article/pii/S1053811913005168", journal = "NeuroImage", volume = "82", pages = "1--12", year = "2013", issn = "1053-8119", keywords = "Diffusion magnetic resonance imaging, Diffusion tensor imaging, Quality assessment, Entropy", url = "https://publications.utah.edu/publications/farzinfar13/Farzinfar_NeuroImage2013.pdf", } @Article{SCI:Far2013c, author = "N. Farah and A. Zoubi and S. Matar and L. Golan and A. Marom and C.R. Butson and I. Brosh and S. Shoham", title = "Holographically patterned activation using photo-absorber induced neural-thermal stimulation", journal = "Journal of Neural Engineering", volume = "10", number = "5", pages = "056004", year = "2013", month = "October", issn = "1741-2560", url = "https://publications.utah.edu/publications/Far2013c/Farah_JNeuralEng2013.pdf", } @InProceedings{SCI:Fis2013a, author = "J. Fishbaugh and M.W. Prastawa and G. Gerig and S. Durrleman", title = "Geodesic Shape Regression in the Framework of Currents", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", volume = "23", pages = "718--729", year = "2013", url = "https://publications.utah.edu/publications/Fis2013a/Fishbaugh_ipmi2013.pdf", } @Article{SCI:Fis2013b, author = "J. Fishbaugh and M. Prastawa and G. Gerig and S. Durrleman", title = "Geodesic image regression with a sparse parameterization of diffeomorphisms", booktitle = "Proceedings of the Geometric Science of Information Conference (GSI)", journal = "Geometric Science of Information Lecture Notes in Computer Science ({LNCS})", volume = "8085", pages = "95--102", year = "2013", url = "https://publications.utah.edu/publications/Fis2013b/Fishbaugh_GSI2013.pdf", } @InProceedings{SCI:Fog2013a, author = "T. Fogal and A. Schiewe and J. Krüger", title = "An Analysis of Scalable GPU-Based Ray-Guided Volume Rendering", booktitle = "2013 {IEEE} Symposium on Large Data Analysis and Visualization ({LDAV})", year = "2013", url = "https://publications.utah.edu/publications/Fog2013a/Fogal_Analysis2013.pdf", } @Article{SCI:Fu2013a, author = "Z. Fu and R.M. Kirby and R.T. Whitaker", title = "A Fast Iterative Method for Solving the Eikonal Equation on Tetrahedral Domains", journal = "{SIAM} Journal on Scientific Computing", volume = "35", number = "5", pages = "C473--C494", year = "2013", url = "https://publications.utah.edu/publications/Fu2013a/Fu_JSC2013.pdf", } @InProceedings{SCI:Gam2013a, author = "M. Gamell and I. Rodero and M. Parashar and J.C. Bennett and H. Kolla and J.H. Chen and P.-T. Bremer and A. Landge and A. Gyulassy and P. McCormick and Scott Pakin and Valerio Pascucci and Scott Klasky", title = "Exploring Power Behaviors and Trade-offs of In-situ Data Analytics", booktitle = "Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis", year = "2013", publisher = "Association for Computing Machinery", isbn = "978-1-4503-2378-9", keywords = "SDAV", url = "https://publications.utah.edu/publications/Gam2013a/Gamell_SC2013.pdf", } @InProceedings{SCI:Gar2013a, author = "G. Gardner and A. Morris and K. Higuchi and R.S. MacLeod and J. Cates", title = "A Point-Correspondence Approach to Describing the Distribution of Image Features on Anatomical Surfaces, with Application to Atrial Fibrillation", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "226--229", year = "2013", url = "https://publications.utah.edu/publications/gardener13/Gardner_ISBI2013.pdf", } @Article{SCI:Ger2013a, author = "S. Gerber and O. Reubel and P.-T. Bremer and V. Pascucci and R.T. Whitaker", title = "Morse-Smale Regression", journal = "Journal of Computational and Graphical Statistics", volume = "22", number = "1", pages = "193--214", year = "2013", url = "https://publications.utah.edu/publications/gerber12/Gerber_msregression2012.pdf", } @Article{SCI:Gil2013a, author = "J.M. Gililland and L.A. Anderson and H.B. Henninger and E.N. Kubiak and C.L. Peters", title = "Biomechanical analysis of acetabular revision constructs: is pelvic discontinuity best treated with bicolumnar or traditional unicolumnar fixation?", journal = "Journal of Arthoplasty", volume = "28", number = "1", pages = "178--186", year = "2013", url = "https://publications.utah.edu/publications/gililland13/Gililland_JArthroplasty2013.pdf", } @Article{SCI:Gra2013a, author = "S. Gratzl and A. Lex and N. Gehlenborg and H. Pfister and and M. Streit", title = "LineUp: Visual Analysis of Multi-Attribute Rankings", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '13)", volume = "19", number = "12", pages = "2277--2286", year = "2013", issn = "1077-2626", url = "https://publications.utah.edu/publications/Gra2013a/2013_infovis_lineup.pdf", } @InProceedings{SCI:Gro2013a, author = "A. Grosset and M. Schott and G.-P. Bonneau and C.D. Hansen", title = "Evaluation of Depth of Field for Depth Perception in {DVR}", booktitle = "Proceedings of the 2013 {IEEE} Pacific Visualization Symposium ({PacificVis})", pages = "81--88", year = "2013", url = "https://publications.utah.edu/publications/grosset13/Grosset_PacVis2013.pdf", } @TechReport{SCI:Ha2013a, author = "L.K. Ha and J. King and Z. Fu and R.M. Kirby", title = "A High-Performance Multi-Element Processing Framework on GPUs", number = "UUSCI-2013-005", year = "2013", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2013-005.pdf", } @Article{SCI:Hal2013a, author = "M. Hall and R.M. Kirby and F. Li and M.D. Meyer and V. Pascucci and J.M. Phillips and R. Ricci and J. Van der Merwe and S. Venkatasubramanian", title = "Rethinking Abstractions for Big Data: Why, Where, How, and What", journal = "Cornell University Library", year = "2013", url = "https://publications.utah.edu/publications/Hal2013a/Hall_1306.3295v1.pdf", } @InProceedings{SCI:Hal2013b, author = "M. Hall and J.C. Beckvermit and C.A. Wight and T. Harman and M. Berzins", title = "The influence of an applied heat flux on the violence of reaction of an explosive device", booktitle = "Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery", pages = "11:1--11:8", year = "2013", series = "{XSEDE '13}", location = "San Diego, California", isbn = "978-1-4503-2170-9", keywords = "DDT, cook-off, deflagration, detonation, violence of reaction, c-safe", url = "https://publications.utah.edu/publications/Hal2013b/Hall_XSEDE2013.pdf", } @InProceedings{SCI:Ham2013a, author = "D.K. Hammond and Y. Gur and C.R. Johnson", title = "Graph Diffusion Distance: A Difference Measure for Weighted Graphs Based on the Graph Laplacian Exponential Kernel", booktitle = "Proceedings of the {IEEE} global conference on information and signal processing ({GlobalSIP'13})", pages = "419--422", year = "2013", location = "Austin, Texas", url = "https://publications.utah.edu/publications/hammond13/Hammond_GlobalSIP2013.pdf", } @InProceedings{SCI:Hao2013a, author = "X. Hao and P.T. Fletcher", title = "Joint Fractional Segmentation and Multi-Tensor Estimation in Diffusion MRI", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", pages = "(accepted)", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", url = "https://publications.utah.edu/publications/hao13/Hao_IPMI2013a.pdf", } @Article{SCI:Har2013a, author = "M.D. Harris and S.P. Reese and C.L. Peters and J.A. Weiss and A.E. Anderson", title = "Three-dimensional Quantification of Femoral Head Shape in Controls and Patients with Cam-type Femoroacetabular Impingement", journal = "Annals of Biomedical Engineering", volume = "41", number = "6", pages = "1162--1171", year = "2013", url = "https://publications.utah.edu/publications/harris13/Harris_ABE2013.pdf", } @Article{SCI:Har2013b, author = "M.D. Harris and M. Datar and R.T. Whitaker and E.R. Jurrus and C.L. Peters and A.E. Anderson", title = "Statistical Shape Modeling of Cam Femoroacetabular Impingement", journal = "Journal of Orthopaedic Research", volume = "31", number = "10", pages = "1620--1626", year = "2013", url = "https://publications.utah.edu/publications/harris13/Harris_JOR2013.pdf", } @PhdThesis{SCI:Har2013c, author = "M.D. Harris", title = "The geometry and biomechanics of normal and pathomorphologic human hips", year = "2013", school = "Department of Bioengineering, University of Utah", note = "Ph.D. Thesis", url = "https://publications.utah.edu/publications/harris13/MHarris_phd_dissertation_062013.pdf", } @Article{SCI:Hen2013a, author = "C.R. Henak and A.E. Anderson and J.A. Weiss", title = "Subject-specific analysis of joint contact mechanics: application to the study of osteoarthritis and surgical planning", journal = "Journal of Biomechanical Engineering", volume = "135", number = "2", year = "2013", } @Article{SCI:Hen2013b, author = "H.B. Henninger and C.J. Underwood and S.J. Romney and G.L. Davis and J.A. Weiss", title = "Effect of Elastin Digestion on the Quasi-Static Tensile Response of Medial Collateral Ligament", journal = "Journal of Orthopaedic Research", pages = "(published online)", year = "2013", url = "https://publications.utah.edu/publications/henninger13/Henninger_JOR2013.pdf", } @Article{SCI:Hen2013c, author = "C.R. Henak and Carruth E and A.E. Anderson and M.D. Harris and B.J. Ellis and C.L. Peters and J.A. Weiss", title = "Finite element predictions of cartilage contact mechanics in hips with retroverted acetabula", journal = "Osteoarthritis and Cartilage", volume = "21", pages = "1522-1529", year = "2013", url = "https://publications.utah.edu/publications/henak13/Henak_OaC2013.pdf", } @Article{SCI:Hen2013d, author = "C.R. Henak and A.K. Kapron and B.J. Ellis and S.A. Maas and A.E. Anderson and J.A. Weiss", title = "Specimen-specific predictions of contact stress under physiological loading in the human hip: validation and sensitivity studies", journal = "Biomechanics and Modeling in Mechanobiology", pages = "1-14", year = "2013", } @PhdThesis{SCI:Hen2013e, author = "C.R. Henak", title = "Cartilage and labrum mechanics in the normal and pathomorphologic human hip", year = "2013", school = "Department of Bioengineering, University of Utah", note = "Ph.D. Thesis", url = "https://publications.utah.edu/publications/henak13/CorinneHenak_dissertation.pdf", } @InProceedings{SCI:Her2013a, author = "H. Hernandez and J. Knezevic and T. Fogal and T. Sherman and T. Jevremovic", title = "Visual numerical steering in {3D AGENT} code system for advanced nuclear reactor modeling and design", booktitle = "Annals of Nuclear Energy", volume = "55", pages = "248--257", year = "2013", keywords = "Numerical steering, AGENT code, Deterministic neutron transport codes, Method of Characteristics, R-functions, Numerical visualizations", url = "https://publications.utah.edu/publications/Her2013a/Hernandez_ANE2013.pdf", } @Article{SCI:Hig2013a, author = "K. Higuchi and M. Akkaya and M. Koopmann and J.J. Blauer and N.S. Burgon and K. Damal and R. Ranjan and E. Kholmovski and R.S. Macleod and N.F. Marrouche.", title = "The Effect of Fat Pad Modification during Ablation of Atrial Fibrillation: Late Gadolinium Enhancement MRI Analysis", journal = "Pacing and Clinical Electrophysiology ({PACE})", volume = "36", number = "4", pages = "467--476", year = "2013", month = "April", keywords = "ganglionated plexi, fat pad, atrial fibrillation, catheter ablation, {LGE-MRI}", url = "https://publications.utah.edu/publications/higuchi13/Higuchi_PACE2013.pdf", } @InProceedings{SCI:Hin2013a, author = "J. Hinkle and S. Joshi", title = "{PDiff:} Irrotational Diffeomorphisms for Computational Anatomy", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", pages = "(accepted)", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", keywords = "image registration, computational anatomy, irrotational, Helmholtz-Hodge decomposition, polar factorization", url = "https://publications.utah.edu/publications/hinkle13/Hinkle_IPMI2013.pdf", } @InProceedings{SCI:Hol2013a, author = "T. Höllt and A. Magdy and G. Chen and G. Gopalakrishnan and I. Hoteit and C.D. Hansen and M. Hadwiger", title = "Visual Analysis of Uncertainties in Ocean Forecasts for Planning and Operation of Off-Shore Structures", booktitle = "Proceedings of 2013 {IEEE} Pacific Visualization Symposium ({PacificVis})", pages = "185--192", year = "2013", note = "Received Honerable Mention", keywords = "Uncertainty, Ensemble Simulation, Risk Estimate", url = "https://publications.utah.edu/publications/hollt13/Hollt_PacVis2013.pdf", } @InProceedings{SCI:Jia2013a, author = "F. Jiao and J.M. Phillips and Y. Gur and C.R. Johnson", title = "Uncertainty Visualization in HARDI based on Ensembles of ODFs", booktitle = "Proceedings of 2013 {IEEE} Pacific Visualization Symposium", pages = "193--200", year = "2013", url = "https://publications.utah.edu/publications/Jia2013a/Jiao_PacVis2013.pdf", } @Article{SCI:Joh2013a, author = "C.R. Johnson and A. Pang (Eds.)", title = "International Journal for Uncertainty Quantification", title_url = "http://www.dl.begellhouse.com/journals/52034eb04b657aea,3b447596502fa0fe.html", subtitle = "Special Issue on Working with Uncertainty: Representation, Quantification, Propagation, Visualization, and Communication of Uncertainty", journal = "Int. J. Uncertainty Quantification", volume = "3", number = "2", pages = "vii--viii", year = "2013", publisher = "Begell House, Inc.", issn = "2152-5080", } @Article{SCI:Joh2013b, author = "C.R. Johnson and A. Pang (Eds.)", title = "International Journal for Uncertainty Quantification", title_url = "http://www.dl.begellhouse.com/journals/52034eb04b657aea,2c3d9a3c1f471d44.html", subtitle = "Special Issue on Working with Uncertainty: Representation, Quantification, Propagation, Visualization, and Communication of Uncertainty", journal = "Int. J. Uncertainty Quantification", volume = "3", number = "3", year = "2013", publisher = "Begell House, Inc.", issn = "2152-5080", } @InProceedings{SCI:Jon2013a, author = "C. Jones and T. Liu and M. Ellisman and T. Tasdizen", title = "Semi-Automatic Neuron Segmentation in Electron Microscopy Images Via Sparse Labeling", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1304--1307", year = "2013", month = "April", url = "https://publications.utah.edu/publications/jones13/Jones_ISBI2013a.pdf", } @InProceedings{SCI:Jon2013b, author = "C. Jones and M. Seyedhosseini and M. Ellisman and T. Tasdizen", title = "Neuron Segmentation in Electron Microscopy Images Using Partial Differential Equations", booktitle = "Proceedings of 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1457--1460", year = "2013", month = "April", url = "https://publications.utah.edu/publications/jones13/Jones_ISBI2013b.pdf", } @Article{SCI:Jon2013c, author = "K.B. Jones and M. Datar and S. Ravichandran and H. Jin and E. Jurrus and R.T. Whitaker and M.R. Capecchi", title = "Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas", journal = "Journal of Orthopaedic Research", volume = "31", number = "4", pages = "651--657", year = "2013", url = "https://publications.utah.edu/publications/jones13/Jones_JOR2013.pdf", } @Article{SCI:Kar2013a, author = "R. Karim and R.J. Housden and M. Balasubramaniam and Z. Chen and D. Perry and A. Uddin and Y. Al-Beyatti and E. Palkhi and P. Acheampong and S. Obom and A. Hennemuth and Y. Lu and W. Bai and W. Shi and Y. Gao and H.-O. Peitgen and P. Radau and R. Razavi and A. Tannenbaum and D. Rueckert and J. Cates and T. Schaeffter and D. Peters and R.S. MacLeod and K. Rhode", title = "Evaluation of Current Algorithms for Segmentation of Scar Tissue from Late Gadolinium Enhancement Cardiovascular Magnetic Resonance of the Left Atrium: An Open-Access Grand Challenge", journal = "Journal of Cardiovascular Magnetic Resonance", volume = "15", number = "105", year = "2013", keywords = "Late gadolinium enhancement, Cardiovascular magnetic resonance, Atrial fibrillation, Segmentation, Algorithm benchmarking", url = "https://publications.utah.edu/publications/karim13/Karim_JCMR2013.pdf", } @Article{SCI:Kim2013a, author = "S.H. Kim and V. Fonov and C. Dietrich and C. Vachet and H.C. Hazlett and R.G. Smith and M. Graves and J. Piven and J.H. Gilmore and D.L. Collins and G. Gerig and M. Styner and The IBIS network", title = "Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain", journal = "Journal of Neuroscience Methods", volume = "212", number = "1", pages = "43--55", year = "2013", month = "January", note = "Published online Sept. 29", url = "https://publications.utah.edu/publications/kim12/Kim_JofNeuroscienceMethods2012.pdf", } @Article{SCI:Kir2013a, author = "R.M. Kirby and M.D. Meyer", title = "Visualization Collaborations: What Works and Why", journal = "{IEEE} Computer Graphics and Applications: Visualization Viewpoints", volume = "33", number = "6", pages = "82--88", year = "2013", url = "https://publications.utah.edu/publications/Kir2013a/Kirby_VisViewpoints2013.pdf", } @InProceedings{SCI:Kno2013a, author = "A. Knoll and I. Wald and P. Navratil and M. E Papka and and K. P Gaither", title = "Ray Tracing and Volume Rendering Large Molecular Data on Multi-core and Many-core Architectures.", booktitle = "Proc. 8th International Workshop on Ultrascale Visualization at SC13 (Ultravis), 2013", year = "2013", url = "https://publications.utah.edu/publications/Kno2013a/bnsview.pdf", } @InProceedings{SCI:Kum2013a, author = "S. Kumar and A. Saha and V. Vishwanath and P. Carns and J.A. Schmidt and G. Scorzelli and H. Kolla and R. Grout and R. Latham and R. Ross and M.E. Papka and J. Chen and V. Pascucci", title = "Characterization and modeling of {PIDX} parallel {I/O} for performance optimization", booktitle = "Proceedings of {SC13}: International Conference for High Performance Computing, Networking, Storage and Analysis", pages = "67", year = "2013", keywords = "I/O, Network Characterization, Performance Modeling", url = "https://publications.utah.edu/publications/Kum2013a/Kumar_SC2013.pdf", } @Article{SCI:Lex2013a, author = "A. Lex and C. Partl and D. Kalkofen and M. Streit and A. Wasserman and S. Gratzl and D. Schmalstieg and H. Pfister", title = "Entourage: Visualizing Relationships between Biological Pathways using Contextual Subsets", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '13)", volume = "19", number = "12", pages = "2536--2545", year = "2013", issn = "1077-2626", url = "https://publications.utah.edu/publications/Lex2013a/2013_infovis_entourage.pdf", } @InProceedings{SCI:Liu2013a, author = "T. Liu and M. Seyedhosseini and M. Ellisman and T. Tasdizen", title = "Watershed Merge Forest Classification for Electron Microscopy Image Stack Segmentation", booktitle = "Proceedings of the 2013 International Conference on Image Processing", year = "2013", url = "https://publications.utah.edu/publications/Liu2013a/Liu_ICIP2013.pdf", } @InProceedings{SCI:Liv2013a, author = "Y. Livnat and E. Jurrus and A.V. Gundlapalli and P. Gestland", title = "The CommonGround visual paradigm for biosurveillance", booktitle = "Proceedings of the 2013 IEEE International Conference on Intelligence and Security Informatics (ISI)", pages = "352--357", year = "2013", isbn = "978-1-4673-6214-6", keywords = "biosurveillance, visualization, interactive exploration, situational awareness", url = "https://publications.utah.edu/publications/livnat13/Livnat_CommonGround2013.pdf", } @InProceedings{SCI:Mal2013a, author = "D. Maljovec and Bei Wang and V. Pascucci and P.-T. Bremer and M.Pernice and D. Mandelli and R. Nourgaliev", title = "Exploration of High-Dimensional Scalar Function for Nuclear Reactor Safety Analysis and Visualization", booktitle = "Proceedings of the 2013 International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering ({M&C})", pages = "712-723", year = "2013", keywords = "high-dimensional data analysis, computational topology, nuclear reactor safety analysis, visualization", url = "https://publications.utah.edu/publications/Mal2013a/Maljovec_HighDim_ReactorSafety2013.pdf", } @InProceedings{SCI:Mal2013b, author = "D. Maljovec and Bei Wang and D. Mandelli and P.-T. Bremer and V. Pascucci", title = "Adaptive Sampling Algorithms for Probabilistic Risk Assessment of Nuclear Simulations", booktitle = "Proceedings of the 2013 International Topical Meeting on Probabilistic Safety Assessment and Analysis ({PSA} 2013)", year = "2013", note = "First runner-up for Best Student Paper Award", keywords = "high-dimensional data analysis, computational topology, nuclear reactor safety analysis, visualization", url = "https://publications.utah.edu/publications/maljovec13/Maljovec_Adaptive_Sampling2013.pdf", } @InProceedings{SCI:Mal2013c, author = "D. Maljovec and Bei Wang and D. Mandelli and P.-T. Bremer and V. Pascucci", title = "Analyze Dynamic Probabilistic Risk Assessment Data through Clustering", booktitle = "Proceedings of the 2013 International Topical Meeting on Probabilistic Safety Assessment and Analysis ({PSA} 2013)", year = "2013", url = "https://publications.utah.edu/publications/maljovec13/Maljovec_DPRA_Clustering2013.pdf", } @Article{SCI:Mal2013d, author = "D. Maljovec and Bei Wang and A. Kupresanin and G. Johannesson and V. Pascucci and P.-T. Bremer", title = "Adaptive Sampling with Topological Scores", journal = "Int. J. Uncertainty Quantification", volume = "3", number = "2", pages = "119--141", year = "2013", publisher = "Begell House", url = "https://publications.utah.edu/publications/Mal2013d/Maljovec_IJUQ2013.pdf", } @Article{SCI:Mcc2013a, author = "R.K. McClure and M. Styner and J.A. Lieberman and S. Gouttard and G. Gerig and X. Shi and H. Zhu", title = "Localized differences in caudate and hippocampal shape associated with schizophrenia but not antipsychotic type", journal = "Psychiatry Research: Neuroimaging", volume = "211", number = "1", pages = "1--10", year = "2013", month = "January", url = "https://publications.utah.edu/publications/mcclure12/Mcclure_PRN2012.pdf", } @Article{SCI:Mcd2013a, author = "K.S. McDowell and F. Vadakkumpadan and R. Blake and J. Blauer and G.t Plank and R.S. MacLeod and N.A. Trayanova", title = "Mechanistic Inquiry into the Role of Tissue Remodeling in Fibrotic Lesions in Human Atrial Fibrillation", journal = "Biophysical Journal", volume = "104", pages = "2764--2773", year = "2013", url = "https://publications.utah.edu/publications/mcdowell13/McDowell_Biophysical2013.pdf", } @Article{SCI:Mcg2013a, author = "C. McGann and N. Akoum and A. Patel and E. Kholmovski and P. Revelo and K. Damal and B. Wilson and J. Cates and A. Harrison and R. Ranjan and N.S. Burgon and T. Greene and D. Kim and E.V.R. DiBella and D. Parker and R.S. MacLeod and N.F. Marrouche", title = "Atrial Fibrillation Ablation Outcome is Predicted by Left Atrial Remodeling on {MRI}", journal = "Circulation: Arrhythmia and Electrophysiology", year = "2013", month = "December", note = "Published online before print.", keywords = "atrial fibrillation arrhythmia, catheter ablation, magnetic resonance imaging, remodeling, outcome", url = "https://publications.utah.edu/publications/mcgann13/McGann_Circ2013.pdf", } @Article{SCI:Mcl2013a, author = "T. McLoughlin and M.W. Jones and R.S. Laramee and R. Malki and I. Masters and C.D. Hansen", title = "Similarity Measures for Enhancing Interactive Streamline Seeding", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "19", number = "8", pages = "1342--1353", year = "2013", issn = "1077-2626", url = "https://publications.utah.edu/publications/Mcl2013a/McLoughlin_TVCG2013.pdf", } @TechReport{SCI:Men2013a, author = "Q. Meng and A. Humphrey and J. Schmidt and M. Berzins", title = "Preliminary Experiences with the Uintah Framework on Intel Xeon Phi and Stampede", number = "UUSCI-2013-002", year = "2013", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "Uintah, hybrid parallelism, scalability, parallel, adaptive, MIC, Xeon Phi, heterogeneous systems, Stampede, co-processor", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2013-002.pdf", } @TechReport{SCI:Men2013c, author = "Q. Meng and A. Humphrey and J. Schmidt and M. Berzins", title = "Investigating Applications Portability with the Uintah DAG-based Runtime System on PetaScale Supercomputers", number = "UUSCI-2013-003", year = "2013", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "Uintah, hybrid parallelism, scalability, parallel, adaptive, MIC, Xeon Phi, heterogeneous systems, Stampede, co-processor", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2013-003.pdf", } @InProceedings{SCI:Men2013d, author = "Q. Meng and A. Humphrey and J. Schmidt and M. Berzins", title = "Investigating Applications Portability with the Uintah {DAG-based} Runtime System on {PetaScale} Supercomputers", booktitle = "Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis", pages = "96:1--96:12", year = "2013", isbn = "978-1-4503-2378-9", keywords = "Blue Gene/Q, GPU, Xeon Phi, adaptive, application, co-processor, heterogeneous systems, hybrid parallelism, parallel, scalability, software, uintah, NETL", url = "https://publications.utah.edu/publications/meng13/Meng_SC2013.pdf", } @InProceedings{SCI:Men2013e, author = "Q. Meng and A. Humphrey and J. Schmidt and M. Berzins", title = "Preliminary Experiences with the Uintah Framework on Intel Xeon Phi and Stampede", booktitle = "Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery ({XSEDE} 2013)", pages = "48:1--48:8", year = "2013", location = "San Diego, California", keywords = "MIC, Xeon Phi, adaptive, co-processor, heterogeneous systems, hybrid parallelism, parallel, scalability, stampede, uintah, c-safe", url = "https://publications.utah.edu/publications/meng13/Meng_XSEDE2013.pdf", } @InProceedings{SCI:Oli2013a, author = "D.C.B. de Oliveira and Z. Rakamaric and G. Gopalakrishnan and A. Humphrey and Q. Meng and M. Berzins", title = "Crash Early, Crash Often, Explain Well: Practical Formal Correctness Checking of Million-core Problem Solving Environments for {HPC}", booktitle = "Proceedings of the 35th International Conference on Software Engineering ({ICSE} 2013)", pages = "(accepted)", year = "2013", keywords = "Uintah", url = "https://publications.utah.edu/publications/oliveira13/deOliveira_ICSEWS2013.pdf", } @InProceedings{SCI:Pan2013a, author = "B. Paniagua and O. Emodi and J. Hill and J. Fishbaugh and L.A. Pimenta and S.R. Aylward and E. Andinet and G. Gerig and J. Gilmore and J.A. van Aalst and M. Styner", title = "3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants", booktitle = "Proceedings of SPIE 8672, Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging, 86720V", year = "2013", url = "https://publications.utah.edu/publications/paniagua13/Paniagua_SPIE2013.pdf", } @InProceedings{SCI:Pan2013b, author = "B. Paniagua and A. Lyall and J.-B. Berger and C. Vachet and R.M. Hamer and S. Woolson and W. Lin and J. Gilmore and M. Styner", title = "Lateral ventricle morphology analysis via mean latitude axis", booktitle = "Proceedings of SPIE 8672, Biomedical Applications in Molecular, Structural, and Functional Imaging, 86720M", year = "2013", url = "https://publications.utah.edu/publications/paniagua13/Paniagua_SPIE2013b.pdf", } @Article{SCI:Par2013a, author = "C. Partl and A. Lex and M. Streit and D. Kalkofen and K. Kashofer and D. Schmalstieg", title = "enRoute: Dynamic Path Extraction from Biological Pathway Maps for Exploring Heterogeneous Experimental Datasets", journal = "BMC Bioinformatics", volume = "14", number = "Suppl 19", year = "2013", month = "Nov", issn = "1471-2105", url = "https://publications.utah.edu/publications/Par2013a/2013_bmc_enroute.pdf", } @InProceedings{SCI:Pas2013a, author = "V. Pascucci and P.-T. Bremer and A. Gyulassy and G. Scorzelli and C. Christensen and B. Summa and S. Kumar", title = "Scalable Visualization and Interactive Analysis Using Massive Data Streams", booktitle = "Cloud Computing and Big Data", volume = "23", pages = "212--230", year = "2013", series = "Advances in Parallel Computing", publisher = "IOS Press", keywords = "Visualization, data analysis, topological data analysis, Parallel I/O", url = "https://publications.utah.edu/publications/Pas2013a/ViSUS_book_chapter.pdf", } @Article{SCI:Pat2013a, author = "Y. Pathak and B.H. Kopell and A. Szabo and C. Rainey and H. Harsch and C.R. Butson", title = "The role of electrode location and stimulation polarity in patient response to cortical stimulation for major depressive disorder", journal = "Brain Stimulation", volume = "6", number = "3", pages = "254--260", year = "2013", publisher = "Elsevier Ltd.", month = "July", issn = "1935-861X", keywords = "cortical stimulation", url = "https://publications.utah.edu/publications/Pat2013a/Pathak_BrainStim2013.pdf", } @Article{SCI:Pet2013a, author = "J.R. Peterson and C.A. Wight and M. Berzins", title = "Applying high-performance computing to petascale explosive simulations", journal = "Procedia Computer Science", year = "2013", keywords = "Energetic Material Hazards, Uintah, MPM, ICE, MPMICE, Scalable Parallelism, C-SAFE", url = "https://publications.utah.edu/publications/peterson13/Peterson_JRP-ICCS2013.pdf", } @InProceedings{SCI:Phi2013a, author = "S. Philip and B. Summa and J. Tierny and P.-T. Bremer and V. Pascucci", title = "Scalable Seams for Gigapixel Panoramas", booktitle = "Proceedings of the 2013 Eurographics Symposium on Parallel Graphics and Visualization", pages = "25--32", year = "2013", note = "Awarded Best Paper!", url = "https://publications.utah.edu/publications/philip13/Philip_EGPGV2013.pdf", } @Article{SCI:Pot2013a, author = "K. Potter and S. Gerber and E.W. Anderson", title = "Visualization of Uncertainty without a Mean", journal = "IEEE Computer Graphics and Applications", volume = "33", number = "1", pages = "75--79", year = "2013", series = "Visualization Viewpoints", url = "https://publications.utah.edu/publications/potter13/Potter_VisViewpoints2013.pdf", } @InProceedings{SCI:Ram2013a, author = "N. Ramesh and T. Tasdizen", title = "Three-dimensional alignment and merging of confocal microscopy stacks", booktitle = "2013 IEEE International Conference on Image Processing", year = "2013", publisher = "IEEE", month = "September", url = "https://publications.utah.edu/publications/Ram2013a/06738297.pdf", } @Article{SCI:Ree2013a, author = "S.P. Reese and C.J. Underwood and J.A. Weiss", title = "Effects of decorin proteoglycan on fibrillogenesis, ultrastructure, and mechanics of type I collagen gels", journal = "Matrix Biology", pages = "(in press)", year = "2013", url = "https://publications.utah.edu/publications/reese13/Reese_MB2013.pdf", } @Article{SCI:Ree2013b, author = "S.P. Reese and B.J. Ellis and J.A. Weiss", title = "Micromechanical model of a surrogate for collagenous soft tissues: development, validation, and analysis of mesoscale size effects", journal = "Biomechanics and Modeling in Mechanobiology", pages = "(in press)", year = "2013", url = "https://publications.utah.edu/publications/reese13/Reese_BMM2013.pdf", } @InProceedings{SCI:Ros2013a, author = "P. Rosen and B. Burton and K. Potter and C.R. Johnson", title = "Visualization for understanding uncertainty in the simulation of myocardial ischemia", booktitle = "Proceedings of the 2013 Workshop on Visualization in Medicine and Life Sciences", year = "2013", url = "https://publications.utah.edu/publications/rosen13/Rosen_EuroVis2013.pdf", } @Article{SCI:Ros2013b, author = "P. Rosen", title = "A Visual Approach to Investigating Shared and Global Memory Behavior of {CUDA} Kernels", title_url = "http://youtu.be/jjvTkQroNeA", journal = "Computer Graphics Forum", volume = "32", number = "3", pages = "161--170", year = "2013", publisher = "Wiley-Blackwell", month = "June", url = "https://publications.utah.edu/publications/Ros2013b/Rosen_EuroVis2013b.pdf", } @Article{SCI:Run2013a, author = "A. Rungta and B. Summa and D. Demir and P.-T. Bremer and V. Pascucci", title = "{ManyVis}: Multiple Applications in an Integrated Visualization Environment", journal = "IEEE Transactions on Visualization and Computer Graphics ({TVCG})", volume = "19", number = "12", pages = "2878--2885", year = "2013", month = "December", url = "https://publications.utah.edu/publications/Run2013a/Rungta_manyvis2013.pdf", } @InProceedings{SCI:Sad2013a, author = "N. Sadeghi and M.W. Prastawa and P.T. Fletcher and C. Vachet and Bo Wang and J.H. Gilmore and G. Gerig", title = "Multivariate Modeling of Longitudinal {MRI} in Early Brain Development with Confidence Measures", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1400--1403", year = "2013", url = "https://publications.utah.edu/publications/sadeghi13/Sadeghi_ISBI2013.pdf", } @Article{SCI:Sad2013b, author = "N. Sadeghi and M.W. Prastawa and P.T. Fletcher and J. Wolff and J.H. Gilmore and G. Gerig", title = "Regional characterization of longitudinal {DT-MRI} to study white matter maturation of the early developing brain", journal = "NeuroImage", volume = "68", pages = "236--247", year = "2013", month = "March", url = "https://publications.utah.edu/publications/sadeghi12/Sadeghi_Neuroimage2012.pdf", } @InProceedings{SCI:Sad2013c, author = "N. Sadeghi and C. Vachet and M. Prastawa and J. Korenberg and G. Gerig", title = "Analysis of Diffusion Tensor Imaging for Subjects with Down Syndrome", booktitle = "Proceedings of the 19th Annual Meeting of the Organization for Human Brain Mapping {OHBM}", pages = "(in print)", year = "2013", url = "https://publications.utah.edu/publications/sadeghi13/Sadeghi_HBM2013.pdf", url = "https://publications.utah.edu/publications/sadeghi13/Sadeghi_HBM2013_Table2Correction.pdf", } @PhdThesis{SCI:Sad2013d, author = "N. Sadeghi", title = "Modeling and Analysis of Longitudinal Multimodal Magnetic Resonance Imaging: Application to Early Brain Development", year = "2013", school = "Department of Bioengineering, University of Utah", month = "December", note = "Ph.D. Thesis", keywords = "autism, brain development, image analysis", url = "https://publications.utah.edu/publications/sadeghi13/Sadeghi_PhDdissertation2013.pdf", } @MastersThesis{SCI:Saq2013a, author = "Nazmus Saquib", title = "Visualizing Intrinsic Isosurface Variation due to Uncertainty Through Heat Kernel Signatures", year = "2013", school = "University of Utah School of Computing", note = "Master of Science Thesis, Computational Engineering and Science ({CES}) Program", url = "https://publications.utah.edu/publications/saquib13/Saquib_thesis.pdf", } @Article{SCI:Sch2013a, author = "M. Schott and T. Martin and A.V.P. Grosset and S.T. Smith and C.D. Hansen", title = "Ambient Occlusion Effects for Combined Volumes and Tubular Geometry", journal = "IEEE Transactions on Visualization and Computer Graphics (TVCG)", volume = "19", number = "6", pages = "913--926", year = "2013", note = "Selected as Spotlight paper for June 2013 issue", keywords = "Volume rendering, ambient occlusion, stream tubes", url = "https://publications.utah.edu/publications/schott13/Schott_TVCG2013.pdf", } @Article{SCI:Sch2013b, author = "P.T. Scheffel and H.B. Henninger and R.T. Burks", title = "Relationship of the intercondylar roof and the tibial footprint of the {ACL:} implications for {ACL} reconstruction", journal = "American Journal of Sports Medicine", volume = "41", number = "2", pages = "396--401", year = "2013", url = "https://publications.utah.edu/publications/scheffel13/Scheffel_AmJSportsMed2013.pdf", } @InProceedings{SCI:Sch2013c, author = "J. Schmidt and M. Berzins and J. Thornock and T. Saad and J. Sutherland", title = "Large Scale Parallel Solution of Incompressible Flow Problems using Uintah and hypre", booktitle = "2013 13th {IEEE/ACM} International Symposium on Cluster, Cloud and Grid Computing {(CCGrid)}", pages = "458--465", year = "2013", keywords = "Uintah, hypre, parallelism, scalability, linear equations", url = "https://publications.utah.edu/publications/schmidt13/Schmidt_CCGRID2013.pdf", } @InProceedings{SCI:Sey2013a, author = "M. Seyedhosseini and M. Ellisman and T. Tasdizen", title = "Segmentation of Mitochondria in Electron Microscopy Images using Algebraic Curves", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "860--863", year = "2013", url = "https://publications.utah.edu/publications/seyedhosseini13/Seyedhosseini_ISBI2013.pdf", } @Article{SCI:Sey2013b, author = "M. Seyedhosseini and T. Tasdizen", title = "Multi-class Multi-scale Series Contextual Model for Image Segmentation", journal = "{IEEE} Transactions on Image Processing", volume = "PP", number = "99", year = "2013", url = "https://publications.utah.edu/publications/seyedhosseini13/Seyedhosseini_MCMS2013.pdf", } @InProceedings{SCI:Sey2013c, author = "M. Seyedhosseini and M. Sajjadi and T. Tasdizen", title = "Image Segmentation with Cascaded Hierarchical Models and Logistic Disjunctive Normal Networks", booktitle = "Proceedings of the {IEEE} International Conference on Computer Vison ({ICCV} 2013)", pages = "(accepted)", year = "2013", url = "https://publications.utah.edu/publications/seyedhosseini13/Seyedhosseini_ICCV2013.pdf", } @InProceedings{SCI:Sha2013a, author = "A. Sharma and P.T. Fletcher and J.H. Gilmore and M.L. Escolar and A. Gupta and M. Styner and G. Gerig", title = "Spatiotemporal Modeling of Discrete-Time Distribution-Valued Data Applied to {DTI} Tract Evolution in Infant Neurodevelopment", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "684--687", year = "2013", url = "https://publications.utah.edu/publications/sharma13/Sharma_isbi2013.pdf", } @InProceedings{SCI:Shi2013a, author = "Y. Shi and G. Roger and C. Vachet and F. Budin and E. Maltbie and A. Verde and M. Hoogstoel and J.-B. Berger and M. Styner", title = "Software-based diffusion MR human brain phantom for evaluating fiber-tracking algorithms", booktitle = "Proceedings of {SPIE} 8669, Medical Imaging 2013: Image Processing, 86692A", year = "2013", url = "https://publications.utah.edu/publications/Shi2013a/Shi_SPIE2013_86692A.pdf", } @Article{SCI:Sho2013a, author = "S. Short and J.T. Elison and B.D. Goldman and M. Styner and H. Gu and M. Connelly and E. Maltbie and S. Woolson and W. Lin and G. Gerig and J.S. Reznick and J.H. Gilmore", title = "Associations Between White Matter Microstructure and Infants' Working Memory", journal = "Neuroimage", volume = "64", number = "1", pages = "156--166", year = "2013", publisher = "Elsvier", month = "January", url = "https://publications.utah.edu/publications/short12/Short_NIMG-12-1102R1.pdf", } @Article{SCI:Sib2013a, author = "S.C. Sibole and S.A. Maas and J.P. Halloran and J.A. Weiss and A. Erdemir", title = "Evaluation of a post-processing approach for multiscale analysis of biphasic mechanics of chondrocytes", journal = "Computer Methods in Biomechanical and Biomedical Engineering", volume = "16", number = "10", pages = "1112--1126", year = "2013", } @InProceedings{SCI:Sin2013a, author = "N.P. Singh and J. Hinkle and S. Joshi and P.T. Fletcher", title = "A Vector Momenta Formulation of Diffeomorphisms for Improved Geodesic Regression and Atlas Construction", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1219--1222", year = "2013", note = "Received Best Student Paper Award", keywords = "{LDDMM}, Geodesic regression, Atlas, Vector Momentum", url = "https://publications.utah.edu/publications/singh13/Singh_ISBI2013.pdf", } @InProceedings{SCI:Sin2013b, author = "N.P. Singh and J. Hinkle and S. Joshi and P.T. Fletcher", title = "A Hierarchical Geodesic Model for Diffeomorphic Longitudinal Shape Analysis", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", pages = "(accepted)", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", url = "https://publications.utah.edu/publications/singh13/Singh_IPMI2013.pdf", } @TechReport{SCI:Skr2013a, author = "P. Skraba and Bei Wang and G. Chen and P. Rosen", title = "2D Vector Field Simplification Based on Robustness", number = "UUSCI-2013-004", year = "2013", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2013-004.pdf", } @Article{SCI:Sta2013a, author = "W.C. Stacey and S. Kellis and B. Greger and C.R. Butson and P.R. Patel and T. Assaf and T. Mihaylova and S. Glynn", title = "Potential for unreliable interpretation of EEG recorded with microelectrodes", journal = "Epilepsia", year = "2013", month = "May", issn = "00139580", url = "https://publications.utah.edu/publications/Sta2013a/Stacey Epilepsia2013.pdf", } @Article{SCI:Sut2013a, author = "T. Suter and A. Barg and M. Knupp and H.B. Henninger and B. Hintermann", title = "Surgical technique: talar neck osteotomy to lengthen the medial column after a malunited talar neck fracture", journal = "Clinical Orthopaedics & Related research", volume = "471", number = "4", pages = "1356--1364", year = "2013", url = "https://publications.utah.edu/publications/Sut2013a/Suter_CORR2013.pdf", } @Article{SCI:Sze2013a, author = "M. Szegedi and J. Hinkle and P. Rassiah and V. Sarkar and B. Wang and S. Joshi and B. Salter", title = "Four‐dimensional tissue deformation reconstruction (4D TDR) validation using a real tissue phantom", journal = "Journal of Applied Clinical Medical Physics", volume = "14", number = "1", pages = "115-132", year = "2013", url = "https://publications.utah.edu/publications/Sze2013a/Szegedi_et_al-2013-Journal_of_Applied_Clinical_Medical_Physics.pdf", } @Article{SCI:Tas2013a, author = "R.Z. Tashjian and H.B. Henninger", title = "Biomechanical evaluation of subpectoral biceps tenodesis: dual suture anchor versus interference screw fixation", journal = "Journal of Shoulder and Elbow Surgery", volume = "22", number = "10", pages = "1408–-1412", year = "2013", url = "https://publications.utah.edu/publications/tashjian13/Tashjian_JSES2013.pdf", } @InProceedings{SCI:Var2013a, author = "A. Vardhan and M.W. Prastawa and J. Piven and G. Gerig", title = "Modeling Longitudinal {MRI} Changes in Populations Using a Localized, Information-Theoretic Measure of Contrast", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1396--1399", year = "2013", url = "https://publications.utah.edu/publications/vardhan13/Vardhan_ISBI2013.pdf", } @InProceedings{SCI:Var2013b, author = "A. Vardhan and J. Piven and M. Prastawa and G. Gerig", title = "A longitudinal structural {MRI} study of change in regional contrast in Autism Spectrum Disorder", booktitle = "Proceedings of the 19th Annual Meeting of the Organization for Human Brain Mapping {OHBM}", pages = "(in print)", year = "2013", url = "https://publications.utah.edu/publications/vardhan13/Vardhan_OHBM2013.pdf", } @InProceedings{SCI:Ven2013a, author = "G. Veni and Z. Fu and S.P. Awate and R.T. Whitaker", title = "Proper Ordered Meshing of Complex Shapes and Optimal Graph Cuts Applied to Atrial-Wall Segmentation from {DE-MRI}", booktitle = "Proceedings of the 2013 {IEEE} 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1296--1299", year = "2013", url = "https://publications.utah.edu/publications/veni13/Veni_ISBI2013.pdf", } @InProceedings{SCI:Ven2013b, author = "G. Veni and S. Awate and Z. Fu and R.T. Whittaker", title = "Bayesian Segmentation of Atrium Wall using Globally-Optimal Graph Cuts on {3D} Meshes", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", volume = "23", pages = "656--677", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", keywords = "Atrial Fibrillation, Bayesian segmentation, Minimum s-t cut, Mesh Generation, Geometric Graph", url = "https://publications.utah.edu/publications/veni13/Veni_IPMI2013.pdf", } @InProceedings{SCI:Ver2013a, author = "A.R. Verde and J.-B. Berger and A. Gupta and M. Farzinfar and A. Kaiser and V.W. Chanon and C. Boettiger and H. Johnson and J. Matsui and A. Sharma and C. Goodlett and Y. Shi and H. Zhu and G. Gerig and S. Gouttard and C. Vachet and M. Styner", title = "{UNC-Utah} {NA-MIC} {DTI} framework: atlas based fiber tract analysis with application to a study of nicotine smoking addiction", booktitle = "Proc. {SPIE} 8669, Medical Imaging 2013: Image Processing, 86692D", volume = "8669", pages = "86692D-86692D-8", year = "2013", url = "https://publications.utah.edu/publications/Ver2013a/Verde_SPIE2013.pdf", } @InProceedings{SCI:Wan2013a, author = "Bo Wang and M.W. Prastawa and A. Irimia and M.C. Chambers and N. Sadeghi and P.M. Vespa and J.D. van Horn and G. Gerig", title = "Analyzing Imaging Biomarkers for Traumatic Brain Injury Using {4D} Modeling of Longitudinal {MRI}", booktitle = "2013 {IEEE} Proceedings of 10th International Symposium on Biomedical Imaging ({ISBI})", pages = "1392 - 1395", year = "2013", url = "https://publications.utah.edu/publications/wang13/Wang_ISBI2013.pdf", } @Article{SCI:Wan2013b, author = "D. Wang and R.M. Kirby and R.S. MacLeod and C.R. Johnson", title = "Inverse Electrocardiographic Source Localization of Ischemia: An Optimization Framework and Finite Element Solution", journal = "Journal of Computational Physics", volume = "250", pages = "403--424", year = "2013", publisher = "Academic Press", issn = "0021-9991", keywords = "cvrti, 2P41 GM103545-14", url = "https://publications.utah.edu/publications/wang13/Wang_JCP_Preprint_2013.pdf", } @Article{SCI:Wan2013c, author = "Bei Wang and P. Rosen and P. Skraba and H. Bhatia and V. Pascucci", title = "Visualizing Robustness of Critical Points for {2D} Time-Varying Vector Fields", title_url = "http://youtu.be/9x4TtzeXmfQ", journal = "Computer Graphics Forum", volume = "32", number = "3", pages = "221--230", year = "2013", publisher = "Wiley-Blackwell", month = "jun", url = "https://publications.utah.edu/publications/Wan2013c/Wang_EuroVis2013.pdf", } @Article{SCI:Wan2013d, author = "Y. Wan and H. Otsuna and C.D. Hansen", title = "Synthetic Brainbows", journal = "Computer Graphics Forum", volume = "32", number = "3pt4", pages = "471--480", year = "2013", publisher = "Wiley-Blackwell", month = "jun", url = "https://publications.utah.edu/publications/Wan2013d/Wan_SynBrainbows2013.pdf", } @InProceedings{SCI:Wan2013e, author = "Bo Wang and M. Prastawa and A. Saha and S.P. Awate and A. Irimia and M.C. Chambers and P.M. Vespa and J.D. Van Horn and V. Pascucci and G. Gerig", title = "Modeling 4D changes in pathological anatomy using domain adaptation: analysis of TBI imaging using a tumor database", booktitle = "Proceedings of the 2013 MICCAI-MBIA Workshop", volume = "8159", pages = "31--39", year = "2013", series = "Lecture Notes in Computer Science (LNCS)", note = "Awarded Best Paper!", url = "https://publications.utah.edu/publications/wang13/Wang_MBIA2013.pdf", } @PhdThesis{SCI:Wan2013f, author = "Y. Wan", title = "Fluorender, An Interactive Tool for Confocal Microscopy Data Visualization and Analysis", year = "2013", school = "School of Computing, University of Utah", month = "June", note = "Ph.D. Thesis", keywords = "confocal microscopy, visualization, software", url = "https://publications.utah.edu/publications/wan13/Wan_PhDThesis2013.pdf", } @TechReport{SCI:Web2013a, author = "G.H. Weber and K. Beketayev and P.-T. Bremer and B. Hamann and M. Haranczyk and M. Hlawitschka and V. Pascucci", title = "Comprehensible Presentation of Topological Information", number = "LBNL-5693E", year = "2013", institution = "Lawrence Berkeley National Laboratory", url = "https://publications.utah.edu/publications/Web2013a/Weber_LBNL-5693E.pdf", } @Article{SCI:Whi2013a, author = "R.T. Whitaker and M. Mirzargar and R.M. Kirby", title = "Contour Boxplots: A Method for Characterizing Uncertainty in Feature Sets from Simulation Ensembles", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "19", number = "12", pages = "2713--2722", year = "2013", month = "December", url = "https://publications.utah.edu/publications/whitaker13/Whitaker_TVCG2013.pdf", } @InProceedings{SCI:Wid2013a, author = "W. Widanagamaachchi and P. Rosen and V. Pascucci", title = "A Flexible Framework for Fusing Image Collections into Panoramas", booktitle = "Proceedings of the 2013 SIBGRAPI Conference on Graphics, Patterns, and Images", pages = "195-202", year = "2013", note = "Awarded Best Paper.", url = "https://publications.utah.edu/publications/widanagamaachchi13/Widanagamaachchi_Sibgrapi2013_114574_2.pdf", url = "https://publications.utah.edu/publications/widanagamaachchi13/Widanagamaachchi_Sibgrapi2013_114574_4.pdf", url = "https://publications.utah.edu/publications/widanagamaachchi13/Widanagamaachchi_Sibgrapi2013_centipede.pdf", url = "https://publications.utah.edu/publications/widanagamaachchi13/Widanagamaachchi_Sibgrapi2013_street.pdf", } @InProceedings{SCI:Won2013a, author = "E. Wong and S.P. Awate and P.T. Fletcher", title = "Adaptive Sparsity in Gaussian Graphical Models", booktitle = "Proceedings of the 30th International Conference on Machine Learning ({ICML})", pages = "(accepted)", year = "2013", url = "https://publications.utah.edu/publications/wong13/Wong_ICML2013.pdf", } @InProceedings{SCI:Zha2013a, author = "M. Zhang and N.P. Singh and P.T. Fletcher", title = "Bayesian Estimation of Regularization and Atlas Building in Diffeomorphic Image Registration", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", pages = "(accepted)", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", url = "https://publications.utah.edu/publications/zhang13/Zhang_IPMI2013.pdf", } @InProceedings{SCI:Zha2013b, author = "M. Zhang and P.T. Fletcher", title = "Probabilistic Principal Geodesic Analysis", booktitle = "Proceedings of the 2013 Conference on Neural Information Processing Systems ({NIPS})", pages = "(accepted)", year = "2013", url = "https://publications.utah.edu/publications/zhang13/Zhang_NIPS2013.pdf", } @InProceedings{SCI:Zho2013a, author = "L. Zhou and C.D. Hansen", title = "Transfer Function Design based on User Selected Samples for Intuitive Multivariate Volume Exploration", booktitle = "Proceedings of the 2013 {IEEE} Pacific Visualization Symposium ({PacificVis})", pages = "73--80", year = "2013", issn = "2165-8765", url = "https://publications.utah.edu/publications/zhou13/Zhou_PacVis2013.pdf", } @InProceedings{SCI:Zho2013b, author = "L. Zhou and C.D. Hansen", title = "Interactive rendering and efficient querying for large multivariate seismic volumes on consumer level {PCs}", booktitle = "Proceedings of the 2013 {IEEE} Symposium on Large-Scale Data Analysis and Visualization ({LDAV})", pages = "117--118", year = "2013", url = "https://publications.utah.edu/publications/Zho2013b/Zhou_LDAV2013.pdf", } @InProceedings{SCI:Zhu2013a, author = "X. Zhu and Y. Gur and W. Wang and P.T. Fletcher", title = "Model Selection and Estimation of Multi-Compartment Models in Diffusion {MRI} with a Rician Noise Model", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging ({IPMI})", volume = "23", pages = "644--655", year = "2013", series = "Lecture Notes in Computer Science ({LNCS})", url = "https://publications.utah.edu/publications/Zhu2013a/Zhu_IPMI2013.pdf", } @Article{SCI:Ahn2012a, author = "Y.-J. Ahn and C. Hoffmann and P. Rosen", title = "A Note on Circle Packing", journal = "Journal of Zhejiang University SCIENCE C", volume = "13", number = "8", pages = "559--564", year = "2012", keywords = "Circle packing, Algorithm performance, Parallel computation, Graphics processing unit (GPU)", url = "https://publications.utah.edu/publications/ahn12/Ahn_JZUS2012.pdf", } @Article{SCI:Ako2012a, author = "N.W. Akoum and C.J. McGann and G. Vergara and T. Badger and R. Ranjan and C. Mahnkopf and E.G. Kholmovski and R.S. Macleod and N.F. Marrouche", title = "Atrial Fibrosis Quantified Using Late Gadolinium Enhancement {MRI} is AssociatedWith Sinus Node Dysfunction Requiring Pacemaker Implant", journal = "Journal of Cardiovascular Electrophysiology", volume = "23", number = "1", pages = "44--50", year = "2012", url = "https://publications.utah.edu/publications/akoum12/Akoum_JCE2012.pdf", } @Article{SCI:Ate2012a, author = "G.A. Ateshian and S.A. Maas and J.A. Weiss", title = "Solute transport across a contact interface in deformable porous media", journal = "Journal of Biomechanics", volume = "45", number = "6", pages = "1023-–1027", year = "2012", keywords = "FEBio, Finite element modeling, Contact mechanics, Solute transport, Porous media, Biphasic theory", } @InProceedings{SCI:Awa2012a, author = "S.P. Awate and P. Zhu and R.T. Whitaker", title = "How Many Templates Does It Take for a Good Segmentation?: Error Analysis in Multiatlas Segmentation as a Function of Database Size", booktitle = "Int. Workshop Multimodal Brain Image Analysis (MBIA) at Int. Conf. MICCAI", volume = "2", pages = "103--114", year = "2012", series = "Lecture Notes in Computer Science (LNCS)", note = "Recieved Best Paper Award", url = "https://publications.utah.edu/publications/awate12/Awate_MICCAI2012.pdf", } @Article{SCI:Bar2012a, author = "A. Barg and N. Knupp and H.B. Henninger and L. Zwicky and B. Hintermann", title = "Total ankle replacement using {HINTEGRA}, an unconstrained, three-component system: surgical technique and pitfalls", journal = "Foot and Ankle Clinics", volume = "17", number = "4", pages = "607--635", year = "2012", keywords = "Total ankle replacement, Three-component total ankle prosthesis, HINTEGRA prosthesis, Valgus osteoarthritic ankle, Varus osteoarthritic ankle, Functional outcome", url = "https://publications.utah.edu/publications/barg12/Barg_FAC2012a.pdf", } @Article{SCI:Bar2012b, author = "A. Barg and G.I. Pagenstert and A.G. Leumann and A.M. Müller and H.B. Henninger and V. Valderrabano", title = "Treatment of the Arthritic Valgus Ankle", journal = "Foot and Ankle Clinics", volume = "17", number = "4", pages = "647--663", year = "2012", keywords = "Total ankle replacement, Ankle alignment, Arthritic valgus ankle, Valgus deformity, Realignment surgery for arthritic valgus ankle, Total ankle replacement for arthritic valgus angle", url = "https://publications.utah.edu/publications/barg12/Barg_FAC2012b.pdf", } @Article{SCI:Bar2012c, author = "A. Barg and M.D. Harris and H.B. Henninger and R.L. Amendola and C.L. Saltzman and B. Hintermann and A.E. Anderson", title = "Medial distal tibial angle: comparison between weightbearing mortise view and hindfoot alignment view", journal = "Foot & Ankle International", volume = "33", number = "8", pages = "655--661", year = "2012", } @InProceedings{SCI:Bee2012a, author = "J. Beezley and M. Martin and P. Rosen and J. Mandel and A. Kochanski", title = "Data management and analysis with {WRF} and {SFIRE}", booktitle = "Proceedings of the {IEEE} International Geoscience and Remote Sensing Symposium", year = "2012", note = "UCD CCM Report 312", url = "https://publications.utah.edu/publications/beezley12/Beezley_IGRSS2012.pdf", } @InProceedings{SCI:Ben2012a, author = "J.C. Bennett and H. Abbasi and P. Bremer and R.W. Grout and A. Gyulassy and T. Jin and S. Klasky and H. Kolla and M. Parashar and V. Pascucci and P. Pbay and D. Thompson and H. Yu and F. Zhang and J. Chen", title = "Combining In-Situ and In-Transit Processing to Enable Extreme-Scale Scientific Analysis", booktitle = "{ACM/IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})", year = "2012", month = "November", location = "Salt Lake City, Utah, U.S.A.", url = "https://publications.utah.edu/publications/bennett12/Bennett_ICHPCNSA2012.pdf", } @TechReport{SCI:Ber2012a, author = "M. Berzins", title = "Status of Release of the Uintah Computational Framework", number = "UUSCI-2012-001", year = "2012", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2012-001.pdf", } @InProceedings{SCI:Ber2012b, author = "M. Berzins and Q. Meng and J. Schmidt and J.C. Sutherland", title = "{DAG-Based} Software Frameworks for PDEs", booktitle = "Proceedings of {Euro-Par} 2011 Workshops, Part {I}", pages = "324--333", year = "2012", series = "Lecture Notes in Computer Science ({LNCS}) 7155", publisher = "Springer-Verlag Berlin Heidelberg", month = "August", keywords = "DOD, Uintah, CSAFE", url = "https://publications.utah.edu/publications/berzins12/Berzins_HPSS2012.pdf", } @InProceedings{SCI:Bha2012b, author = "A. Bhatele and T. Gamblin and S.H. Langer and P.-T. Bremer and E.W. Draeger and B. Hamann and K.E. Isaacs and A.G. Landge and J.A. Levine and V. Pascucci and M. Schulz and C.H. Still", title = "Mapping applications with collectives over sub-communicators on torus networks", booktitle = "Proceedings of Supercomputing 2012", pages = "1--11", year = "2012", url = "https://publications.utah.edu/publications/bhatele12/Bhatele_SC2012.pdf", } @InProceedings{SCI:Bro2012a, author = "C. Brownlee and T. Fogal and C.D. Hansen", title = "{GLuRay:} Ray Tracing in Scientific Visualization Applications using {OpenGL} Interception", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2012)", pages = "41--50", year = "2012", editor = "H. Childs and T. Kuhlen and F. Marton", keywords = "kaust, scidac", url = "https://publications.utah.edu/publications/brownlee12/Brownlee_gluray-EGPGV2012.pdf", } @InProceedings{SCI:Bro2012b, author = "C. Brownlee and J. Patchett and L.-T. Lo and D. DeMarle and C. Mitchell and J. Ahrens and C.D. Hansen", title = "A Study of Ray Tracing Large-scale Scientific Data in Parallel Visualization Applications", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2012)", pages = "51--60", year = "2012", editor = "H. Childs and T. Kuhlen and F. Marton", keywords = "kaust, scidac", url = "https://publications.utah.edu/publications/brownlee12/Brownlee_scaling-EGPGV2012.pdf", } @InProceedings{SCI:Bro2012c, author = "J.R. Bronson and J.A. Levine and R.T. Whitaker", title = "Lattice Cleaving: Conforming Tetrahedral Meshes of Multimaterial Domains with Bounded Quality", booktitle = "Proceedings of the 21st International Meshing Roundtable", pages = "191--209", year = "2012", url = "https://publications.utah.edu/publications/bronson12/Bronson_cleaving2012.pdf", } @Article{SCI:Bro2012d, author = "J.R. Bronson and J.A. Levine and R.T. Whitaker", title = "Particle Systems for Adaptive, Isotropic Meshing of {CAD} Models", journal = "Engineering with Computers", volume = "28", number = "4", pages = "331--344", year = "2012", url = "https://publications.utah.edu/publications/bronson12/Bronson_EngComp2012.pdf", } @Article{SCI:But2012a, author = "C. Butson and G. Tamm and S. Jain and T. Fogal and J. Krüger", title = "Evaluation of Interactive Visualization on Mobile Computing Platforms for Selection of Deep Brain Stimulation Parameters", journal = "{IEEE} Transactions on Visualization and Computer Graphics", pages = "(accepted)", year = "2012", issn = "1077-2626", keywords = "scidac, dbs", url = "https://publications.utah.edu/publications/But2012a/Butson_TVCG2012.pdf", } @InCollection{SCI:But2012b, author = "C.R. Butson", title = "Computational Models of Neuromodulation", booktitle = "Emerging Horizons in Neuromodulation", pages = "5--22", year = "2012", editor = "Elena Moro and Clement Hamani", publisher = "Academic Press", isbn = "978012404706", url = "https://publications.utah.edu/publications/But2012b/Butson_IntRevNeurobio2012.pdf", } @Article{SCI:Cas2012a, author = "C. Cascio and M.J. Gribbin and S. Gouttard and R.G. Smith and M. Jomier and S.H. Field and M. Graves and H.C. Hazlett and K. Muller and G. Gerig and J. Piven", title = "Fractional Anisotropy Distributions in 2-6 Year-Old Children with Autism", journal = "Journal of Intellectual Disability Research (JIDR)", pages = "(in print)", year = "2012", url = "https://publications.utah.edu/publications/cascio12/Cascio_JIDR2012.pdf", } @Article{SCI:Cha2012a, author = "C.C. Chang and L. Krishnan and S.S. Nunes and K.H. Church and L.T. Edgar and E.D. Boland and J.A. Weiss and S.K. Williams and J.B. Hoying", title = "Determinants of microvascular network topology in implanted neovasculatures", journal = "Arteriosclerosis, Thrombosis, and Vascular Biology", volume = "32", number = "1", pages = "5--14", year = "2012", url = "https://publications.utah.edu/publications/chang12/Chang_atvb_2012.pdf", } @Article{SCI:Che2012a, author = "F. Chen and H. Obermaier and H. Hagen and B. Hamann and J. Tierny and V. Pascucci.", title = "Topology Analysis of Time-Dependent Multi-Fluid Data Using the Reeb Graph", journal = "Computer Aided Geometric Design", year = "2012", publisher = "Elsevier", note = "Published online Apr 24.", url = "https://publications.utah.edu/publications/chen12/Chen_CAGD2012.pdf", } @Article{SCI:Che2012b, author = "G. Chen and V. Kwatra and L.-Y. Wei and C.D. Hansen and E. Zhang", title = "Design of {2D} Time-Varying Vector Fields", journal = "{IEEE} Transactions on Visualization and Computer Graphics {TVCG}", volume = "18", number = "10", pages = "1717--1730", year = "2012", url = "https://publications.utah.edu/publications/chen11/Chen_TVCG2011.pdf", } @Article{SCI:Chi2012a, author = "C.-S. Chiang and C. Hoffmann and P. Rosen", title = "A Generalized Malfatti Problem", journal = "Computational Geometry: Theory and Applications", volume = "45", number = "8", pages = "425--435", year = "2012", keywords = "Malfatti's problem, circle packing, geometric constraint solving, GPU programming", url = "https://publications.utah.edu/publications/chiang12/Chiang_CGTA2012.pdf", } @InProceedings{SCI:Cho2012a, author = "A.N.M. Imroz Choudhury and Bei Wang and P. Rosen and V. Pascucci", title = "Topological Analysis and Visualization of Cyclical Behavior in Memory Reference Traces", booktitle = "Proceedings of the {IEEE} Pacific Visualization Symposium ({PacificVis} 2012)", pages = "9--16", year = "2012", keywords = "scidac", url = "https://publications.utah.edu/publications/choudhury12/Choudhury_PacVis2012.pdf", } @InProceedings{SCI:Dan2012a, author = "M. Dannhauer and D.H. Brooks and D. Tucker and R.S. MacLeod", title = "A pipeline for the simulation of transcranial direct current stimulation for realistic human head models using {SCIRun}/{BioMesh3D}", booktitle = "Proceedings of the 2012 {IEEE} Int. Conf. Engineering and Biology Society ({EMBC})", pages = "5486--5489", year = "2012", url = "https://publications.utah.edu/publications/dannhauer12/Dannhauer_EMBS2012.pdf", } @InProceedings{SCI:Dat2012a, author = "M. Datar and P. Muralidharan and A. Kumar and S. Gouttard and J. Piven and G. Gerig and R.T. Whitaker and P.T. Fletcher", title = "Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy", booktitle = "Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data", volume = "7570", pages = "76--87", year = "2012", series = "Lecture Notes in Computer Science", publisher = "Springer Berlin / Heidelberg", isbn = "978-3-642-33554-9", keywords = "Computer Science", url = "https://publications.utah.edu/publications/Dat2012a/Datar_MixedEffectsSTIA2012.pdf", } @InProceedings{SCI:Dib2012a, author = "E.V.R. DiBella and T. Tasdizen", title = "Edge enhanced spatio-temporal constrained reconstruction of undersampled dynamic contrast enhanced radial {MRI}", booktitle = "Proceedings of the 2010 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro", pages = "704--707", year = "2012", url = "https://publications.utah.edu/publications/dibella12/Dibella_ISBI2012.pdf", } @Article{SCI:Dou2012a, author = "M.K. Dougherty and H. Gu and J. Bizzell and S. Ramsey and G. Gerig and D.O. Perkins and A. Belger", title = "Differences in subcortical structures in young adolescents at familial risk for schizophrenia: A preliminary study", journal = "Psychiatry Res.", pages = "(Epub ahead of print", year = "2012", month = "Nov. 9", url = "https://publications.utah.edu/publications/dougherty12/Dougherty-PsychRes11-2012.pdf", } @InProceedings{SCI:Duc2012a, author = "A. Duchowski and M. Price and M.D. Meyer and P. Orero", title = "Aggregate Gaze Visualization with Real-Time Heatmaps", booktitle = "Proceedings of the ACM Symposium on Eye Tracking Research and Applications ({ETRA})", pages = "13--20", year = "2012", url = "https://publications.utah.edu/publications/duchowski12/Duchowski_gaze-vis2012.pdf", } @InProceedings{SCI:Dur2012a, author = "S. Durrleman and M.W. Prastawa and S. Joshi and G. Gerig and A. Trouve", title = "Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters", booktitle = "Proceedings of MICCAI 2012", pages = "223--230", year = "2012", series = "Lecture Notes in Computer Science (LNCS)", month = "October", url = "https://publications.utah.edu/publications/durrleman12/Durrleman_miccai2012.pdf", } @InProceedings{SCI:Dur2012c, author = "S. Durrleman and S. Allassonniere and S. Joshi", title = "Sparse Adaptive Parameterization of Variability in Image Ensembles", booktitle = "International Journal of Computer Vision", pages = "1--23", year = "2012", url = "https://publications.utah.edu/publications/durrleman12/Durrleman_IJCV_2012.pdf", } @InProceedings{SCI:Fis2012a, author = "J. Fishbaugh and S. Durrleman and J. Piven and G. Gerig", title = "A framework for longitudinal data analysis via shape regression", booktitle = "Medical Imaging 2012: Image Processing", year = "2012", editor = "David R. Haynor and Sebastien Ourselin", publisher = "SPIE Intl Soc Optical Eng", month = "Feb", url = "https://publications.utah.edu/publications/Fis2012a/Fishbaugh_spie2012_final-annot.pdf", } @InProceedings{SCI:Fis2012b, author = "J. Fishbaugh and M.W. Prastawa and S. Durrleman and G. Gerig", title = "Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling", booktitle = "Medical Image Computing and Computer-Assisted Intervention – Proceedings of MICCAI 2012", volume = "7510", pages = "731--738", year = "2012", series = "Lecture Notes in Computer Science (LNCS)", month = "October", url = "https://publications.utah.edu/publications/fishbaugh12/Fishbaugh_miccai2012.pdf", } @Article{SCI:Gen2012a, author = "X. Geng and S. Gouttard and A. Sharma and H. Gu and M. Styner and W. Lin and G. Gerig and J.H. Gilmore", title = "Quantitative Tract-Based White Matter Development from Birth to Age Two Years", journal = "NeuroImage", pages = "1-44", year = "2012", month = "March", url = "https://publications.utah.edu/publications/geng12/Geng_NeuroImage2012.pdf", } @Article{SCI:Ger2012a, author = "S. Gerber and K. Potter", title = "Data Analysis with the Morse-Smale Complex: The msr Package for R", journal = "Journal of Statistical Software", volume = "50", number = "2", year = "2012", url = "https://publications.utah.edu/publications/gerber11/Gerber_JSS2011.pdf", } @Article{SCI:Ges2012a, author = "P.H. Gesteland and Y. Livnat and N. Galli and M.H. Samore and A.V. Gundlapalli", title = "The {EpiCanvas} infectious disease weather map: an interactive visual exploration of temporal and spatial correlations", journal = "J. Amer. Med. Inform. Assoc.", volume = "19", pages = "954--959", year = "2012", note = "Awarded 1st place for Outstanding Research Article at ISDS 2012 and the Homer R. Warner Award at the AMIA Annual Symposium 2012", url = "https://publications.utah.edu/publications/gesteland12/Gesteland_EpiCanvas2012.pdf", } @InProceedings{SCI:Gou2012a, author = "S. Gouttard and C.B. Goodlett and M. Kubicki and G. Gerig", title = "Measures for Validation of DTI Tractography", booktitle = "Medical Imaging 2012: Image Processing", year = "2012", editor = "David R. Haynor and Sebastien Ourselin", publisher = "SPIE Intl Soc Optical Eng", month = "Feb", url = "https://publications.utah.edu/publications/Gou2012a/Gouttarad_dti_validation_spie2012-final-annot.pdf", } @Article{SCI:Gup2012a, author = "A. Gupta and M. Escolar and C. Dietrich and J. Gilmore and G. Gerig and M. Styne", title = "{3D} Tensor Normalization for Improved Accuracy in {DTI} Registration Methods", booktitle = " Biomedical Image Registration Lecture Notes in Computer Science ({LNCS})", journal = " Biomedical Image Registration Lecture Notes in Computer Science ({LNCS})", volume = "7359", pages = "170--179", year = "2012", url = "https://publications.utah.edu/publications/Gup2012a/Gupta_3DNorm_WBIR2012.pdf", } @InProceedings{SCI:Gur2012a, author = "Y. Gur and F. Jiao and S.X. Zhu and C.R. Johnson", title = "White matter structure assessment from reduced {HARDI} data using low-rank polynomial approximations", booktitle = "Proceedings of {MICCAI} 2012 Workshop on Computational Diffusion {MRI} ({CDMRI12})", pages = "186-197", year = "2012", series = "Lecture Notes in Computer Science ({LNCS})", month = "October", location = "Nice, France", url = "https://publications.utah.edu/publications/gur12/Gur_CDMRI2012.pdf", } @InProceedings{SCI:Gyu2012a, author = "A. Gyulassy and V. Pascucci and T. Peterka and R. Ross", title = "The Parallel Computation of Morse-Smale Complexes", booktitle = "Proceedings of the Parallel and Distributed Processing Symposium ({IPDPS})", pages = "484--495", year = "2012", url = "https://publications.utah.edu/publications/gyulassy12/Gyulassy_IPDPS2012.pdf", } @Article{SCI:Gyu2012b, author = "A. Gyulassy and P.-T. Bremer and V. Pascucci", title = "Computing Morse-Smale Complexes with Accurate Geometry", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "18", number = "12", pages = "2014--2022", year = "2012", url = "https://publications.utah.edu/publications/gyulassy12/Gyulassy_TVCG2012.pdf", } @Article{SCI:Gyu2012c, author = "A. Gyulassy and N. Kotava and M. Kim and C. Hansen and H. Hagen and and V. Pascucci", title = "Direct Feature Visualization Using Morse-Smale Complexes", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "18", number = "9", pages = "1549--1562", year = "2012", month = "September", url = "https://publications.utah.edu/publications/gyulassy12/Gyulassy_TVCG2012b.pdf", } @Article{SCI:Ha2012a, author = "L.K. Ha and J. Krüger and J.L.D. Comba and C.T. Silva and S. Joshi", title = "ISP: An Optimal Out-of-Core Image-Set Processing Streaming Architecture for Parallel Heterogeneous Systems", journal = "IEEE Transactions on Visualization and Computer Graphics (TVCG)", volume = "18", number = "6", pages = "838--851", year = "2012", url = "https://publications.utah.edu/publications/Ha2012a/Ha_TVCG2012.pdf", } @Article{SCI:Ha2012b, author = "L.K. Ha and J. Krüger and J.L.D. Comba and C.T. Silva and S. Joshi", title = "{ISP}: An Optimal Out-of-Core Image-Set Processing Streaming Architecture for Parallel Heterogeneous Systems", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "18", number = "5", pages = "838--851", year = "2012", } @Article{SCI:Hal2012a, author = "J.P. Halloran and S. Sibole and C.C. Van Donkelaar and M.C. Van Turnhout and O.W. Oomens and J.A. Weiss and F. Guilak and A. Erdemir", title = "Multiscale mechanics of articular cartilage: potentials and challenges of coupling musculoskeletal, joint, and microscale computational models", journal = "Annals of Biomedical Engineering", volume = "40", number = "11", pages = "2456--2474", year = "2012", } @Article{SCI:Han2012a, author = "B.J. Hansen and M.D. Harris and L.A. Anderson and C.L. Peters and J.A. Weiss and A.E. Anderson", title = "Correlation between radiographic measures of acetabular morphology with 3D femoral head coverage in patients with acetabular retroversion", journal = "Acta Orthopaedica", volume = "83", number = "3", pages = "233--239", year = "2012", url = "https://publications.utah.edu/publications/hansen12/Hansen_ao_2012.pdf", } @InProceedings{SCI:Har2012a, author = "M.D. Harris and M. Datar and E. Jurrus and C.L. Peters and R.T. Whitaker and A.E. Anderson", title = "Statistical Shape Modeling of CAM-type Femoroacetabular Impingement", booktitle = "Proceedings of the International Symposium on Computer Methods in Biomechanics and Biomedical Engineering ({CMBBE} 2012)", year = "2012", url = "https://publications.utah.edu/publications/harris12/Harris_CMBBE2012.pdf", } @Article{SCI:Har2012b, author = "M.D. Harris and A.E. Anderson and C.R. Henak and B.J. Ellis and C.L. Peters and J.A. Weiss", title = "Finite element prediction of cartilage contact stresses in normal human hips", journal = "Journal of Orthopaedic Research", volume = "30", number = "7", pages = "1133--1139", year = "2012", keywords = "hip, finite element, biomechanics, cartilage contact stresses, cartilage pressure", url = "https://publications.utah.edu/publications/harris12/Harris_jor_2012.pdf", } @Article{SCI:Haz2012a, author = "H.C. Hazlett and H. Gu and R.C. McKinstry and D.W.W. Shaw and K.N. Botteron and S. Dager and M. Styner and C. Vachet and G. Gerig and S. Paterson and R.T. Schultz and A.M. Estes and A.C. Evans and J. Piven", title = "Brain Volume Findings in Six Month Old Infants at High Familial Risk for Autism", journal = "American Journal of Psychiatry ({AJP})", pages = "(in print)", year = "2012", url = "https://publications.utah.edu/publications/hazlett12/Hazlett_AJP2012.pdf", } @Article{SCI:Hen2012a, author = "H.B. Henninger and Barg A and A.E. Anderson and K.N. Bachus and R.Z. Tashjian and R.T. Burks", title = "Effect of deltoid tension and humeral version in reverse total shoulder arthroplasty: a biomechanical study", journal = "Journal of Shoulder and Elbow Surgery", volume = "21", number = "4", pages = "483–-490", year = "2012", keywords = "Shoulder, reverse arthroplasty, deltoid tension, humeral version, biomechanical simulator", url = "https://publications.utah.edu/publications/henninger12/Henninger_jses_2012a.pdf", } @Article{SCI:Hen2012b, author = "H.B. Henninger and A. Barg and A.E. Anderson and K.N. Bachus and R.T. Burks and R.Z. Tashjian", title = "Effect of lateral offset center of rotation in reverse total shoulder arthroplasty: a biomechanical study", journal = "Journal of Shoulder and Elbow Surgery", volume = "21", number = "9", pages = "1128--1135", year = "2012", keywords = "Shoulder simulator, reverse arthroplasty, lateral offset, center of rotation", url = "https://publications.utah.edu/publications/henninger12/Henninger_jses_2012b.pdf", } @Article{SCI:Hin2012a, author = "J. Hinkle and P. Muralidharan and P.T. Fletcher and S. Joshi", title = "Polynomial Regression on Riemannian Manifolds", journal = "arXiv", volume = "1201.2395", year = "2012", url = "https://publications.utah.edu/publications/hinkle12/Hinkle_arXiv2012.pdf", } @Article{SCI:Hog2012a, author = "L. Hogrebe and A.R.C. Paiva and E. Jurrus and C. Christensen and M. Bridge and L. Dai and R.L. Pfeiffer and P.R. Hof and B. Roysam and J.R. Korenberg and T. Tasdizen", title = "Serial section registration of axonal confocal microscopy datasets for long-range neural circuit reconstruction", journal = "Journal of Neuroscience Methods", volume = "207", number = "2", pages = "200--210", year = "2012", url = "https://publications.utah.edu/publications/hogrebe12/Hogrebe_JNM2012.pdf", } @InProceedings{SCI:Hol2012a, author = "C. Holzhüter and A. Lex and D. Schmalstieg and H. Schulz and H. Schumann and M. Streit", title = "Visualizing Uncertainty in Biological Expression Data", booktitle = "Proceedings of the SPIE Conference on Visualization and Data Analysis (VDA '12)", volume = "8294", pages = "82940O-82940O-11", year = "2012", url = "https://publications.utah.edu/publications/Hol2012a/2012_vda_uncertainty.pdf", } @InProceedings{SCI:Hon2012a, author = "Y. Hong and S. Joshi and M. Sanchez and M. Styner and M. Niethammer", title = "Metamorphic Geodesic Regression", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2012", pages = "197--205", year = "2012", url = "https://publications.utah.edu/publications/hong12/Hong_MICCAI2012.pdf", } @InProceedings{SCI:Hua2012a, author = "J. Huang and W. Pei and C. Wen and G. Chen and W. Chen and H. Bao", title = "Output-Coherent Image-Space {LIC} for Surface Flow Visualization", booktitle = "Proceedings of the {IEEE} Pacific Visualization Symposium 2012", pages = "137--144", year = "2012", location = "Korea", url = "https://publications.utah.edu/publications/huang12/Huang_ConsistentLIC_PacificVis2012.pdf", } @Article{SCI:Hua2012b, author = "A.H. Huang and B.M. Baker and G.A. Ateshian and R.L. Mauch", title = "Sliding Contact Loading Enhances The Tensile Properties Of Mesenchymal Stem Cell-Seeded Hydrogels", journal = "European Cells and Materials", volume = "24", pages = "29--45", year = "2012", url = "https://publications.utah.edu/publications/huang12/Huang_ECM2012.pdf", } @TechReport{SCI:Hum2012a, author = "A. Humphrey and Q. Meng and M. Berzins and T. Harman", title = "Radiation Modeling Using the Uintah Heterogeneous CPU/GPU Runtime System", number = "UUSCI-2012-003", year = "2012", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "csafe, uintah", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2012-003.pdf", } @InProceedings{SCI:Hum2012b, author = "A. Humphrey and Q. Meng and M. Berzins and T. Harman", title = "Radiation Modeling Using the Uintah Heterogeneous CPU/GPU Runtime System", booktitle = "Proceedings of the first conference of the Extreme Science and Engineering Discovery Environment (XSEDE'12)", year = "2012", publisher = "Association for Computing Machinery", keywords = "Uintah, hybrid parallelism, scalability, parallel, adaptive, GPU, heterogeneous systems, Keeneland, TitanDev", url = "https://publications.utah.edu/publications/Hum2012b/Humphrey_uintah_xsede12_gpu.pdf", } @Article{SCI:Iri2012a, author = "A. Irimia and M.C. Chambers and C.M. Torgerson and M. Filippou and D.A. Hovda and J.R. Alger and G. Gerig and A.W. Toga and P.M. Vespa and R. Kikinis and J.D. Van Horn", title = "Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury", title_url = "http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract", journal = "Frontiers in Neurotrauma", year = "2012", note = "http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract", url = "https://publications.utah.edu/publications/irimia12/Irimia_FNeuro2012.pdf", } @Article{SCI:Iri2012b, author = "A. Irimia and Bo Wang and S.R. Aylward and M.W. Prastawa and D.F. Pace and G. Gerig and D.A. Hovda and R.Kikinis and P.M. Vespa and J.D. Van Horn", title = "Neuroimaging of Structural Pathology and Connectomics in Traumatic Brain Injury: Toward Personalized Outcome Prediction", journal = "NeuroImage: Clinical", volume = "1", number = "1", pages = "1--17", year = "2012", publisher = "Elsvier", url = "https://publications.utah.edu/publications/irimia12/Irimia_NeuroImage2012.pdf", } @Article{SCI:Iye2012a, author = "S.K. Iyer and T. Tasdizen and E.V.R. DiBella", title = "Edge Enhanced Spatio-Temporal Constrained Reconstruction of Undersampled Dynamic Contrast Enhanced Radial MRI", journal = "Magnetic Resonance Imaging", volume = "30", number = "5", pages = "610--619", year = "2012", keywords = "MRI, Reconstruction, Edge enhanced, Compressed sensing, Regularization, Cardiac perfusion", url = "https://publications.utah.edu/publications/iyer12/Iyer_MRI2012.pdf", } @Article{SCI:Joh2012a, author = "C.R. Johnson", title = "Biomedical Visual Computing: Case Studies and Challenges", journal = "{IEEE} Computing in Science and Engineering", volume = "14", number = "1", pages = "12--21", year = "2012", keywords = "kaust", url = "https://publications.utah.edu/publications/johnson12/Johnson_Biomedical-Vis2012.pdf", } @Article{SCI:Jur2012a, author = "E. Jurrus and S. Watanabe and R.J. Giuly and A.R.C. Paiva and M.H. Ellisman and E.M. Jorgensen and T. Tasdizen", title = "Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images", journal = "Neuroinformatics", pages = "(published online)", year = "2012", url = "https://publications.utah.edu/publications/jurrus12/Jurrus_Neuroinformatics2012.pdf", } @Article{SCI:Kap2012a, author = "T. Kapur and S. Pieper and R.T. Whitaker and S. Aylward and M. Jakab and W. Schroeder and R. Kikinis", title = "The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis", booktitle = "Journal of the American Medical Informatics Association", journal = "Journal of the American Medical Informatics Association", volume = "19", number = "2", pages = "176--180", year = "2012", url = "https://publications.utah.edu/publications/kapur12/Kapur_JAMIA2012l.pdf", } @InProceedings{SCI:Kim2012a, author = "M. Kim and G. Chen and C.D. Hansen", title = "Dynamic particle system for mesh extraction on the GPU", booktitle = "Proceedings of the 5th Annual Workshop on General Purpose Processing with Graphics Processing Units", pages = "38--46", year = "2012", series = "GPGPU-5", publisher = "ACM", address = "New York, NY, USA", location = "London, England", isbn = "978-1-4503-1233-2", keywords = "CUDA, GPGPU, particle systems, volumetric data mesh extraction", url = "https://publications.utah.edu/publications/kim12/Kim_GPGPU5_2012.pdf", } @Article{SCI:Kin2012a, author = "J. King and H. Mirzaee and J.K. Ryan and R.M. Kirby", title = "Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering for discontinuous Galerkin Solutions: Improved Errors Versus Higher-Order Accuracy", journal = "Journal of Scientific Computing", volume = "53", pages = "129--149", year = "2012", url = "https://publications.utah.edu/publications/king12/King_JSC2012.pdf", } @InProceedings{SCI:Kne2012a, author = "J. Knezevic and R.-P. Mundani and E. Rank and A. Khan and C.R. Johnson", title = "Extending the SCIRun Problem Solving Environment to Large-Scale Applications", booktitle = "Proceedings of Applied Computing 2012", pages = "171--178", year = "2012", organization = "IADIS", month = "October", keywords = "scirun", url = "https://publications.utah.edu/publications/knezevic12/Knezevic_Applied_Computing2012.pdf", } @Article{SCI:Kol2012a, author = "S. Kole and N.P. Singh and R. King", title = "Whole Brain Fractal Analysis of the Cerebral Cortex across the Adult Lifespan", journal = "Neurology", volume = "78", pages = "P03.104", year = "2012", series = "Meeting Abstracts I", } @InProceedings{SCI:Kop2012a, author = "D. Kopta and T. Ize and J. Spjut and E. Brunvand and A. Davis and A. Kensler", title = "Fast, Effective {BVH} Updates for Animated Scenes", booktitle = "Proceedings of the Symposium on Interactive {3D} Graphics and Games ({I3D} '12)", pages = "197--204", year = "2012", url = "https://publications.utah.edu/publications/Kop2012a/Kopta_I3D2012.pdf", } @InProceedings{SCI:Kum2012a, author = "S. Kumar and V. Vishwanath and P. Carns and J.A. Levine and R. Latham and G. Scorzelli and H. Kolla and R. Grout and R. Ross and M.E. Papka and J. Chen and V. Pascucci", title = "Efficient data restructuring and aggregation for {I/O} acceleration in {PIDX}", booktitle = "Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis", pages = "50:1--50:11", year = "2012", publisher = "IEEE Computer Society Press", isbn = "978-1-4673-0804-5", url = "https://publications.utah.edu/publications/kumar12/Kumar_PIDX_SC2012.pdf", } @Article{SCI:Lan2012a, author = "A.G. Landge and J.A. Levine and A. Bhatele and K.E. Isaacs and T. Gamblin and S. Langer and M. Schulz and  P.-T. Bremer and V. Pascucci", title = "Visualizing Network Traffic to Understand the Performance of Massively Parallel Simulations", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "18", number = "12", pages = "2467--2476", year = "2012", publisher = "IEEE", month = "Dec", url = "https://publications.utah.edu/publications/Lan2012a/Landge-boxfish-infovis12.pdf", } @Article{SCI:Lee2012a, author = "C.H. Lee and B.O. Alpert and P. Sankaranarayanan and O. Alter", title = "{GSVD} Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival", journal = "PLoS ONE", volume = "7", number = "1", pages = "e30098", year = "2012", publisher = "Public Library of Science", url = "https://publications.utah.edu/publications/lee12/Lee_PLoSOne2012.pdf", } @Article{SCI:Lev2012a, author = "J.A. Levine and S. Jadhav and H. Bhatia and V. Pascucci and P.-T. Bremer", title = "A Quantized Boundary Representation of {2D} Flows", journal = "Computer Graphics Forum", volume = "31", number = "3 Pt. 1", pages = "945--954", year = "2012", month = "June", url = "https://publications.utah.edu/publications/Lev2012a/Levine_CGF2012.pdf", } @Article{SCI:Lex2012a, author = "A. Lex and M. Streit and H. Schulz and C. Partl and D. Schmalstieg and P.. Park and N. Gehlenborg", title = "StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization ", journal = "Computer Graphics Forum (EuroVis '12)", volume = "31", number = "3", pages = "1175--1184", year = "2012", issn = "0167-7055", url = "https://publications.utah.edu/publications/Lex2012a/2012_eurovis_stratomex.pdf", } @Article{SCI:Li2012a, author = "J. Li and D. Xiu", title = "Computation of Failure Probability Subject to Epistemic Uncertainty", journal = "SIAM Journal on Scientific Computing", volume = "34", number = "6", pages = "A2946--A2964", year = "2012", keywords = "failure probability, uncertainty quantification, epistemic uncertainty, relative entropy", url = "https://publications.utah.edu/publications/li12/Li_SIAM_JSC2012.pdf", } @InProceedings{SCI:Liu2012a, author = "T. Liu and E. Jurrus and M. Seyedhosseini and M. Ellisman and T. Tasdizen", title = "Watershed Merge Tree Classification for Electron Microscopy Image Segmentation", booktitle = "Proceedings of the 21st International Conference on Pattern Recognition (ICPR)", pages = "133--137", year = "2012", url = "https://publications.utah.edu/publications/liu12/Liu_ICPR2012.pdf", } @InProceedings{SCI:Liu2012b, author = "S. Liu and J.A. Levine and P.-T. Bremer and V. Pascucci", title = "Gaussian Mixture Model Based Volume Visualization", booktitle = "Proceedings of the {IEEE} Large-Scale Data Analysis and Visualization Symposium 2012", pages = "73--77", year = "2012", note = "Received Best Paper Award", keywords = "Uncertainty Visualization, Volume Rendering, Gaussian Mixture Model, Ensemble Visualization", url = "https://publications.utah.edu/publications/liu12/Liu_LDAV2012.pdf", } @InProceedings{SCI:Liu2012c, author = "W. Liu and S. Awate and P.T. Fletcher", title = "Group Analysis of Resting-State {fMRI} by Hierarchical Markov Random Fields", booktitle = "Medical Image Computing and Computer-Assisted Intervention – {MICCAI} 2012", volume = "7512", pages = "189--196", year = "2012", series = "Lecture Notes in Computer Science ({LNCS})", isbn = "978-3-642-33453-5", url = "https://publications.utah.edu/publications/liu12/Liu_MICCAI2012.pdf", } @Article{SCI:Liv2012a, author = "Y. Livnat and T.-M. Rhyne and M. Samore", title = "Epinome: A Visual-Analytics Workbench for Epidemiology Data", journal = "{IEEE} Computer Graphics and Applications", volume = "32", number = "2", pages = "89--95", year = "2012", issn = "0272-1716", url = "https://publications.utah.edu/publications/livnat12/Livnat_Epinome-CGA.pdf", } @Article{SCI:Lu2012a, author = "H. Lu and M. Berzins and C.E. Goodyer and P.K. Jimack", title = "Adaptive High-Order Discontinuous Galerkin Solution of Elastohydrodynamic Lubrication Point Contact Problems", journal = "Advances in Engineering Software", volume = "45", number = "1", pages = "313--324", year = "2012", keywords = "Elastohydrodynamic lubrication, Discontinuous Galerkin, High polynomial degree, h-adaptivity, Nonlinear systems", url = "https://publications.utah.edu/publications/lu12/Lu_LBGJ2012.pdf", } @Article{SCI:Lya2012a, author = "A.E. Lyall and S. Woolson and H.M. Wolf and B.D. Goldman and J.S. Reznick and R.M. Hamer and W. Lin and M. Styner and G. Gerig and J.H. Gilmore", title = "Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2", journal = "Early Human Development", pages = "(in press)", year = "2012", publisher = "Elsevier", url = "https://publications.utah.edu/publications/lyall12/MVM-Lyall-Gilmore-Elsevier-03-26-2012.pdf", } @Article{SCI:Maa2012a, author = "S.A. Maas and B.J. Ellis and G.A. Ateshian and J.A. Weiss", title = "{FEBio:} Finite elements for biomechanics", journal = "Journal of Biomechanical Engineering", volume = "134", number = "1", pages = "011005", year = "2012", url = "https://publications.utah.edu/publications/maas12/Maas_jbme_2012.pdf", } @Article{SCI:Mar2012a, author = "T. Martin and G. Chen and S. Musuvathy and E. Cohen and C.D. Hansen", title = "Generalized Swept Mid-structure for Polygonal Models", journal = "Computer Graphics Forum", volume = "31", number = "2 part 4", pages = "805--814", year = "2012", publisher = "Wiley-Blackwell", month = "May", keywords = "scidac, kaust", url = "https://publications.utah.edu/publications/Mar2012a/Martin_gsm_EG2012.pdf", } @Article{SCI:Mcd2012a, author = "K.S. McDowell and F. Vadakkumpadan and R. Blake and J. Blauer and G. Plank and R.S. MacLeod and N.A. Trayanova", title = "Methodology for patient-specific modeling of atrial fibrosis as a substrate for atrial fibrillation", journal = "Journal of Electrocardiology", volume = "45", number = "6", pages = "640--645", year = "2012", keywords = "Patient-specific modeling, Computational model, Atrial fibrillation, Atrial fibrosis", url = "https://publications.utah.edu/publications/mcdowell12/McDowell_JEC2012.pdf", } @TechReport{SCI:Men2012a, author = "Q. Meng and M. Berzins", title = "Scalable Large-scale Fluid-structure Interaction Solvers in the Uintah Framework via Hybrid Task-based Parallelism Algorithms", number = "UUSCI-2012-004", year = "2012", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "uintah, csafe", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2012-004.pdf", } @InProceedings{SCI:Men2012b, author = "Q. Meng and A. Humphrey and M. Berzins", title = "The Uintah Framework: A Unified Heterogeneous Task Scheduling and Runtime System", booktitle = "Digital Proceedings of The International Conference for High Performance Computing, Networking, Storage and Analysis", pages = "2441--2448", year = "2012", note = "SC’12 –2nd International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing, WOLFHPC 2012", url = "https://publications.utah.edu/publications/Men2012b/uintah-wolfhpc12.pdf", } @Article{SCI:Men2012c, author = "Q. Meng and J. Hall and H. Rutigliano and X. Zhou and B.R. Sessions and R. Stott and K. Panter and C.J. Davies and R. Ranjan and D. Dosdall and R.S. MacLeod and N. Marrouche and K.L. White and Z. Wang and I.A. Polejaeva", title = "30 Generation of Cloned Transgenic Goats with Cardiac Specific Overexpression of Transforming Growth Factor β1", journal = "Reproduction, Fertility and Development", volume = "25", number = "1", pages = "162--163", year = "2012", url = "https://publications.utah.edu/publications/meng12/Meng_RFD2012.pdf", } @InProceedings{SCI:Mey2012a, author = "M.D. Meyer and M. Sedlmair and T. Munzner", title = "The Four-Level Nested Model Revisited: Blocks and Guidelines", booktitle = "Workshop on {BEyond} time and errors: novel evaLuation methods for Information Visualization ({BELIV}), {IEEE} {VisWeek} 2012", year = "2012", url = "https://publications.utah.edu/publications/meyer12/Meyer_BELIV2012.pdf", } @InProceedings{SCI:Mur2012a, author = "P. Muralidharan and P.T. Fletcher", title = "Sasaki Metrics for Analysis of Longitudinal Data on Manifolds", booktitle = "Proceedings of the 2012 {IEEE} conference on Computer Vision and Pattern Recognition ({CVPR})", pages = "1027--1034", year = "2012", url = "https://publications.utah.edu/publications/muralidharan12/Muralidharan_sasaki2012.pdf", } @Article{SCI:Nar2012a, author = "A. Narayan and D. Xiu", title = "Stochastic Collocation Methods on Unstructured Grids in High Dimensions via Interpolation", journal = "SIAM Journal on Scientific Computing", volume = "34", number = "3", pages = "A1729–-A1752", year = "2012", keywords = "stochastic collocation, polynomial chaos, interpolation, orthogonal polynomials", url = "https://publications.utah.edu/publications/narayan12/Narayan_SIAM_JSC2012.pdf", } @Article{SCI:Nar2012b, author = "A. Narayan and Y. Marzouk and D. Xiu", title = "Sequential Data Assimilation with Multiple Models", journal = "Journal of Computational Physics", volume = "231", number = "19", pages = "6401--6418", year = "2012", keywords = "Uncertainty quantification, Data assimilation, Kalman filter, Model averaging", url = "https://publications.utah.edu/publications/narayan12/Narayan_JCP2012.pdf", } @Article{SCI:Nel2012a, author = "B. Nelson and E. Liu and R.M. Kirby and R. Haimes", title = "ElVis: A System for the Accurate and Interactive Visualization of High-Order Finite Element Solutions", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "18", number = "12", pages = "2325--2334", year = "2012", month = "Dec", url = "https://publications.utah.edu/publications/Nel2012a/Nelson_ElVis_TVCG2012.pdf", } @Article{SCI:Pai2012a, author = "A.R.C. Paiva and T. Tasdizen", title = "Fingerprint Image Segmentation using Data Manifold Characteristic Features", journal = "International Journal of Pattern Recognition and Artificial Intelligence", volume = "26", number = "4", pages = "(23 pages)", year = "2012", keywords = "Fingerprint segmentation, manifold characterization, feature extraction, dimensionality reduction", url = "https://publications.utah.edu/publications/paiva12/Paiva_IJPRAI2012.pdf", } @InProceedings{SCI:Pan2012a, author = "B. Paniagua and L. Bompard and J. Cates and R.T. Whitaker and M. Datar and C. Vachet and M. Styner", title = "Combined {SPHARM-PDM} and entropy-based particle systems shape analysis framework", booktitle = "Medical Imaging 2012: Biomedical Applications in Molecular, Structural, and Functional Imaging", year = "2012", publisher = "SPIE Intl Soc Optical Eng", month = "March", url = "https://publications.utah.edu/publications/Pan2012a/Paniagua_SPIE2012.pdf", } @InProceedings{SCI:Par2012a, author = "C Partl and A Lex and M Streit and D Kalkofen and K Kashofer and D Schmalstieg", title = "enRoute: Dynamic Path Extraction from Biological Pathway Maps for In-Depth Experimental Data Analysis", booktitle = "Proceedings of the IEEE Symposium on Biological Data Visualization (BioVis '12)", pages = "107--114", year = "2012", publisher = "IEEE", url = "https://publications.utah.edu/publications/Par2012a/2012_biovis_enroute.pdf", } @InCollection{SCI:Pas2012a, author = "V. Pascucci and G. Scorzelli and B. Summa and P.-T. Bremer and A. Gyulassy and C. Christensen and S. Philip and S. Kumar", title = "The {ViSUS} Visualization Framework", booktitle = "High Performance Visualization: Enabling Extreme-Scale Scientific Insight", year = "2012", editor = "E. Wes Bethel and Hank Childs (LBNL) and Charles Hansen (UofU)", chapter = "19", series = "Chapman and Hall/{CRC} Computational Science", publisher = "Chapman and Hall/{CRC}", url = "https://publications.utah.edu/publications/pascucci12/Pascucci_Visus_ch19.pdf", } @Article{SCI:Pen2012a, author = "Z. Peng and E. Grundy and R.S. Laramee and G. Chen and N. Croft", title = "Mesh-Driven Vector Field Clustering and Visualization: An Image-Based Approach", journal = "IEEE Transactions on Visualization and Computer Graphics, 2011", volume = "18", number = "2", pages = "283--298", year = "2012", month = "February", keywords = "Vector Field Visualization, Clustering, Feature-based, Surfaces", url = "https://publications.utah.edu/publications/Pen2012a/Peng_TVCG2011.pdf", } @InProceedings{SCI:Per2012a, author = "D. Perry and A. Morris and N. Burgon and C. McGann and R.S. MacLeod and J. Cates", title = "Automatic classification of scar tissue in late gadolinium enhancement cardiac MRI for the assessment of left-atrial wall injury after radiofrequency ablation", booktitle = "{SPIE} Proceedings", volume = "8315", pages = "(published online)", year = "2012", url = "https://publications.utah.edu/publications/perry12/Perry_SPIE2012.pdf", } @InProceedings{SCI:Pet2012a, author = "J.R. Peterson and J.C. Beckvermit and T. Harman and M. Berzins and C.A. Wight", title = "Multiscale Modeling of High Explosives for Transportation Accidents", booktitle = "Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond", year = "2012", url = "https://publications.utah.edu/publications/peterson12/Peterson_XSEDE2012.pdf", } @Article{SCI:Pet2012b, author = "J. Peterson and C. Wight", title = "An Eulerian-Lagrangian Computational Model for Deagration and Detonation of High Explosives", journal = "Combustion and Flame", volume = "159", number = "7", pages = "2491--2499", year = "2012", url = "https://publications.utah.edu/publications/Pet2012b/Peterson_CF2012.pdf", } @Article{SCI:Pon2012a, author = "S.P. Ponnapalli and M.A. Saunders and C.F. Van Loan and O. Alter", title = "A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms", journal = "PLoS One", volume = "6", number = "12", pages = "e28072", year = "2012", url = "https://publications.utah.edu/publications/ponnapalli12/Ponnapalli_PLoSOne2012.pdf", } @Article{SCI:Pot2012a, author = "K. Potter and R.M. Kirby and D. Xiu and C.R. Johnson", title = "Interactive visualization of probability and cumulative density functions", journal = "International Journal of Uncertainty Quantification", volume = "2", number = "4", pages = "397--412", year = "2012", keywords = "visualization, probability density function, cumulative density function, generalized polynomial chaos, stochastic Galerkin methods, stochastic collocation methods", url = "https://publications.utah.edu/publications/potter12/Potter_IJUQ2012.pdf", } @Article{SCI:Pot2012b, author = "K. Potter and P. Rosen and C.R. Johnson", title = "From Quantification to Visualization: A Taxonomy of Uncertainty Visualization Approaches", journal = "Uncertainty Quantification in Scientific Computing", volume = "377", pages = "226--249", year = "2012", editor = "Andrew Dienstfrey and Ronald Boisvert", series = "IFIP Advances in Information and Communication Technology Series", publisher = "Springer", keywords = "scidac, netl, uncertainty visualization", url = "https://publications.utah.edu/publications/potter11/Potter_IFIP2011.pdf", } @InProceedings{SCI:Pra2012a, author = "M.W. Prastawa and S.P. Awate and G. Gerig", title = "Building Spatiotemporal Anatomical Models using Joint {4-D} Segmentation, Registration, and Subject-Speci fic Atlas Estimation", booktitle = "Proceedings of the 2012 {IEEE} Mathematical Methods in Biomedical Image Analysis ({MMBIA}) Conference", pages = "49--56", year = "2012", keywords = "namic, adni, autism", url = "https://publications.utah.edu/publications/prastawa12/Prastawa-MMBIA-2012 longt_model-annot.pdf", } @Article{SCI:Pul2012a, author = "R. Pulch and D. Xiu", title = "Generalised Polynomial Chaos for a Class of Linear Conservation Laws", journal = "Journal of Scientific Computing", volume = "51", number = "2", pages = "293--312", year = "2012", keywords = "Generalised polynomial chaos, Galerkin method, Random parameter, Conservation laws, Hyperbolic systems", url = "https://publications.utah.edu/publications/pulch12/Pulch_JSC2012.pdf", } @Article{SCI:Ram2012a, author = "N. Ramesh and B. J. Dangott and M. Salama and T. Tasdizen", title = "Segmentation and Two-Step Classification of White Blood Cells in Peripheral Blood Smear", journal = "Journal of Pathology Informatics", volume = "3", number = "13", year = "2012", url = "https://publications.utah.edu/publications/ramesh12/Ramesh_JPI2012.pdf", } @InProceedings{SCI:Ram2012b, author = "N. Ramesh and M.E. Salama and T. Tasdizen", title = "Segmentation of Haematopoeitic Cells in Bone Marrow Using Circle Detection and Splitting Techniques", booktitle = "9th IEEE International Symposium on Biomedical Imaging (ISBI)", pages = "206--209", year = "2012", url = "https://publications.utah.edu/publications/ramesh12/Ramesh_ISBI2012.pdf", } @Article{SCI:Ran2012a, author = "R. Ranjan and E.G. Kholmovski and J. Blauer and S. Vijayakumar and N.A. Volland and M.E. Salama and D.L. Parker and R.S. MacLeod and N.F. Marrouche", title = "Identification and Acute Targeting of Gaps in Atrial Ablation Lesion Sets Using a Real-Time Magnetic Resonance Imaging System", journal = "Circulation: Arrhythmia and Electrophysiology", volume = "5", pages = "1130--1135", year = "2012", url = "https://publications.utah.edu/publications/ranjan12/Ranjan_Circulation2012.pdf", url = "https://publications.utah.edu/publications/ranjan12/Ranjan_Circulation2012-supp.pdf", } @PhdThesis{SCI:Ree2012a, author = "S.P. Reese", title = "Multiscale structure-function relationships in the mechanical behavior of tendon and ligament", year = "2012", school = "Department of Bioengineering, University of Utah", note = "Ph.D. Thesis", url = "https://publications.utah.edu/publications/reese12/ShawnReese_Dissertation.pdf", } @Article{SCI:Ros2012a, author = "P. Rosen and V. Popescu", title = "Simplification of Node Position Data for Interactive Visualization of Dynamic Datasets", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({IEEE} Visweek 2012 {TVCG} Track)", pages = "1537--1548", year = "2012", url = "https://publications.utah.edu/publications/rosen11/Rosen.2011.TVCG.pdf", } @InProceedings{SCI:Ros2012b, author = "P. Rosen", title = "Rectilinear Texture Warping for Fast Adaptive Shadow Mapping", booktitle = "Proceedings of the ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games (I3D '12)", pages = "151--158", year = "2012", keywords = "Rendering, Shadow Algorithms, Adaptive Sampling", url = "https://publications.utah.edu/publications/rosen12/Rosen.2012.I3D.pdf", } @InProceedings{SCI:Sad2012a, author = "N. Sadeghi and M.W. Prastawa and P.T. Fletcher and J.H. Gilmore and W. Lin and G. Gerig", title = "Statistical Growth Modeling of Longitudinal {DT-MRI} for Regional Characterization of Early Brain Development", booktitle = "Proceedings of {IEEE} {ISBI} 2012", pages = "1507--1510", year = "2012", url = "https://publications.utah.edu/publications/sadeghi12/Sadeghi_ISBI_2012-final-subm.pdf", } @InProceedings{SCI:San2012a, author = "A.R. Sanderson and B. Whitlock and O. Reubel and H. Childs and G.H. Weber and Prabhat and K. Wu", title = "A System for Query Based Analysis and Visualization", booktitle = "Proceedings of the Third International Eurovis Workshop on Visual Analytics {EuroVA} 2012", pages = "25--29", year = "2012", month = "June", url = "https://publications.utah.edu/publications/sanderson12/Sanderson_EuroVA_2012.pdf", } @InProceedings{SCI:San2012b, author = "A.R. Sanderson and G. Chen and X. Tricoche and E. Cohen", title = "Understanding Quasi-Periodic Fieldlines and Their Topology in Toroidal Magnetic Fields", booktitle = "Topological Methods in Data Analysis and Visualization II", pages = "125--140", year = "2012", editor = "R. Peikert and H. Carr and H. Hauser and R. Fuchs", publisher = "Springer", keywords = "fusion", } @Article{SCI:Sar2012a, author = "V. Sarkar and Brian Wang and J. Hinkle and V.J. Gonzalez and Y.J. Hitchcock and P. Rassiah-Szegedi and S. Joshi and B.J. Salter", title = "Dosimetric evaluation of a virtual image-guidance alternative to explicit 6 degree of freedom robotic couch correction", journal = "Practical Radiation Oncology", volume = "2", number = "2", pages = "122--137", year = "2012", url = "https://publications.utah.edu/publications/sarkar12/Sarkar_PRO2012.pdf", } @InProceedings{SCI:Sch2012a, author = "M. Schott and T. Martin and A.V.P. Grosset and C. Brownlee and Thomas Hollt and B.P. Brown and S.T. Smith and C.D. Hansen", title = "Combined Surface and Volumetric Occlusion Shading", booktitle = "Proceedings of Pacific Vis 2012", pages = "169--176", year = "2012", keywords = "scidac, vacet, kaust, nvidia", url = "https://publications.utah.edu/publications/schott12/Schott_PacificVis2012.pdf", } @TechReport{SCI:Sch2012b, author = "J. Schmidt and M. Berzins and J. Thornock and T. Saad and J. Sutherland", title = "Large Scale Parallel Solution of Incompressible Flow Problems using Uintah and hypre", number = "UUSCI-2012-002", year = "2012", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "uintah, csafe", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2012-002.pdf", } @Article{SCI:Sed2012a, author = "M. Sedlmair and M.D. Meyer and T. Munzner", title = "Design Study Methodology: Reflections from the Trenches and the Stacks", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "18", number = "12", pages = "2431--2440", year = "2012", note = "Honorable Mention for Best Paper Award.", url = "https://publications.utah.edu/publications/sedlmair12/Sedlmair_InfoVis2012.pdf", } @InProceedings{SCI:Sha2012a, author = "A. Sharma and S. Durrleman and J.H. Gilmore and G. Gerig", title = "Longitudinal Growth Modeling of Discrete-Time Functions with Application to {DTI} Tract Evolution in Early Neurodevelopment", booktitle = "Proceedings of {IEEE} {ISBI} 2012", pages = "1397--1400", year = "2012", url = "https://publications.utah.edu/publications/sharma12/Sharma_ISBI2012.pdf", } @InProceedings{SCI:Sin2012a, author = "N.P. Singh and A.Y. Wang and P. Sankaranarayanan and P.T. Fletcher and S. Joshi", title = "Genetic, Structural and Functional Imaging Biomarkers for Early Detection of Conversion from {MCI} to {AD}", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention {MICCAI} 2012", volume = "7510", pages = "132--140", year = "2012", keywords = "adni", url = "https://publications.utah.edu/publications/singh12/Singh_MICCAI2012.pdf", } @Article{SCI:Sta2012a, author = "W.C. Stacey and S. Kellis and P.R. Patel and B. Greger and C.R. Butson", title = "Signal distortion from microelectrodes in clinical {EEG} acquisition systems", journal = "Journal of Neural Engineering", volume = "9", number = "5", pages = "056007", year = "2012", month = "October", issn = "1741-2552", url = "https://publications.utah.edu/publications/Sta2012a/Stacey_JNeuralEng2012.pdf", } @Article{SCI:Str2012a, author = "M. Streit and H. Schulz and A. Lex and D. Schmalstieg and H. Schumann", title = "Model-Driven Design for the Visual Analysis of Heterogeneous Data", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "18", number = "6", pages = "998--1010", year = "2012", publisher = "IEEE", url = "https://publications.utah.edu/publications/Str2012a/2012_tvcg_model-driven.pdf", } @Article{SCI:Sum2012a, author = "B. Summa and J. Tierny and V. Pascucci", title = "Panorama weaving: fast and flexible seam processing", journal = "{ACM} Trans. Graph.", volume = "31", number = "4", pages = "83:1--83:11", year = "2012", publisher = "ACM", address = "New York, NY, USA", month = "July", note = "{ACM} ID:2335434", issn = "0730-0301", keywords = "digital panoramas, interactive image boundaries, panorama editing, panorama seams", url = "https://publications.utah.edu/publications/summa12/Summa_panoweaving2012.pdf", } @Article{SCI:Sze2012a, author = "M. Szegedi and P. Rassiah-Szegedi and V. Sarkar and J. Hinkle and Brian Wang and Y.-H. Huang and H. Zhao and S. Joshi and B.J. Salter", title = "Tissue characterization using a phantom to validate four-dimensional tissue deformation", journal = "Medical Physics", volume = "39", number = "10", pages = "6065--6070", year = "2012", url = "https://publications.utah.edu/publications/szegedi12/Szegedi_MedPhy2012.pdf", } @Article{SCI:Tie2012a, author = "H. Tiesler and R.M. Kirby and D. Xiu and T. Preusser", title = "Stochastic Collocation for Optimal Control Problems with Stochastic PDE Constraints", journal = "SIAM Journal on Control and Optimization", volume = "50", number = "5", pages = "2659--2682", year = "2012", keywords = "stochastic collocation, optimal control, stochastic partial differential equations", url = "https://publications.utah.edu/publications/tiesler12/Tiesler_SIAM_JCO2012.pdf", } @Article{SCI:Tie2012b, author = "J. Tierny and V. Pascucci", title = "Generalized Topological Simplification of Scalar Fields on Surfaces", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "18", number = "12", pages = "2005--2013", year = "2012", month = "Dec", url = "https://publications.utah.edu/publications/Tie2012b/Tierny_TVCG2012.pdf", } @PhdThesis{SCI:Tra2012a, author = "L.T. Tran", title = "Numerical Study and Improvement of the Methods in Uintah Framework: The Material Point Method and the Implicit Continuous-Fluid Eulerian Method", year = "2012", school = "School of Computing, University of Utah", month = "December", note = "Advisor: Martin Berzins", url = "https://publications.utah.edu/publications/Tra2012a/LTran_PhDThesis2012.pdf", } @InBook{SCI:Tri2012a, author = "X. Tricoche and C. Garth and A. Sanderson and K. Joy", title = "Visualizing Invariant Manifolds in Area-Preserving Maps", booktitle = "Topological Methods in Data Analysis and Visualization II: Theory, Algorithms, and Applications", pages = "109--124", year = "2012", editor = "R. Peikert, H. Hauser, H. Carr, R. Fuchs", publisher = "Springer Berlin Heidelberg", isbn = "978-3-642-23175-9", url = "https://publications.utah.edu/publications/Tri2012a/invariant.pdf", } @InProceedings{SCI:Vac2012a, author = "C. Vachet and B. Yvernault and K. Bhatt and R.G. Smith and G. Gerig and H.C. Hazlett and M.A. Styner", title = "Automatic corpus callosum segmentation using a deformable active Fourier contour model", booktitle = "Proceedings of Medical Imaging 2012: Biomedical Applications in Molecular, Structural, and Functional Imaging", volume = "8317, 831707", year = "2012", series = "SPIE", url = "https://publications.utah.edu/publications/vachet12/Vachet_SPIE2012_CCSeg.pdf", } @Article{SCI:Val2012a, author = "V. Valderrabano and G.I. Pangenstert and A.M. Müller and J. Paul and H.B. Henninger and A. Barg", title = "Mobile- and Fixed-Bearing Total Ankle Prostheses : Is There Really a Difference?", journal = "Foot and Ankle Clinics", volume = "17", number = "4", pages = "565--585", year = "2012", keywords = "Total ankle replacement, Osteoarthritis, Biomechanics, Survivorship of prosthesis components, 2-component total ankle replacement, 3-component total ankle replacement", } @InProceedings{SCI:Var2012a, author = "A. Vardhan and M.W. Prastawa and S. Gouttard and J. Piven and G. Gerig", title = "Quantifying regional growth patterns through longitudinal analysis of distances between multimodal {MR} intensity distributions", booktitle = "Proceedings of {IEEE} {ISBI} 2012", pages = "1156--1159", year = "2012", url = "https://publications.utah.edu/publications/vardhan12/AVardhan_ISBI_2012-final-subm.pdf", } @InProceedings{SCI:Wan2012a, author = "Y. Wan and H. Otsuna and C.-B. Chien and C.D. Hansen", title = "{FluoRender}: An Application of {2D} Image Space Methods for {3D} and {4D} Confocal Microscopy Data Visualization in Neurobiology Research", booktitle = "Proceedings of Pacific Vis 2012", pages = "201--208", year = "2012", location = "Incheon, Korea", keywords = "scidac", url = "https://publications.utah.edu/publications/wan12/Wan_PacificVis2012.pdf", } @InProceedings{SCI:Wan2012b, author = "Bo Wang and M.W. Prastawa and S.P. Awate and A. Irimia and M.C. Chambers and P.M. Vespa and J.D. Van Horn and G. Gerig", title = "Segmentation of Serial {MRI} of {TBI} patients using Personalized Atlas Construction and Topological Change Estimation", booktitle = "Proceedings of {IEEE} {ISBI} 2012", pages = "1152--1155", year = "2012", url = "https://publications.utah.edu/publications/wang12/BWang_ISBI_2012-final-subm.pdf", } @InProceedings{SCI:Wan2012c, author = "Bo Wang and M.W. Prastawa and A. Irimia and M.C. Chambers and P.M. Vespa and J.D. Van Horn and G. Gerig", title = "A Patient-Specific Segmentation Framework for Longitudinal {MR} Images of Traumatic Brain Injury", booktitle = "Proceedings of Medical Imaging 2012: Image Processing", pages = "831402-831402-7", year = "2012", publisher = "{SPIE}", url = "https://publications.utah.edu/publications/wang12/Wang_SPIE12_TBI_Seg.pdf", } @InProceedings{SCI:Wan2012d, author = "Y. Wan and H. Otsuna and C.-B. Chien and C.D. Hansen", title = "Interactive Extraction of Neural Structures with User-Guided Morphological Diffusion", booktitle = "Proceedings of the {IEEE} Symposium on Biological Data Visualization", pages = "1--8", year = "2012", url = "https://publications.utah.edu/publications/wan12/Wan_SBDV2012.pdf", } @Article{SCI:Wan2012e, author = "Y. Wan and A.K. Lewis and M. Colasanto and M. van Langeveld and G. Kardon and C.D. Hansen", title = "A Practical Workflow for Making Anatomical Atlases in Biological Research", journal = "{IEEE} Computer Graphics and Applications", volume = "32", number = "5", pages = "70--80", year = "2012", url = "https://publications.utah.edu/publications/wan12/Wan_CGA2012.pdf", } @Article{SCI:Wei2012a, author = "V.G. Weirs and N. Fabian and K. Potter and L. McNamara and T. Otahal", title = "Uncertainty in the Development and Use of Equation of State Models", journal = "International Journal for Uncertainty Quantification", pages = "255--270", year = "2012", keywords = "netl", url = "https://publications.utah.edu/publications/weirs12/Weirs_IJUQ2012_revised.pdf", } @InProceedings{SCI:Wid2012a, author = "W. Widanagamaachchi and C. Christensen and P.-T. Bremer and V. Pascucci", title = "Interactive Exploration of Large-scale Time-varying Data using Dynamic Tracking Graphs", booktitle = "2012 IEEE Symposium on Large Data Analysis and Visualization (LDAV)", pages = "9--17", year = "2012", url = "https://publications.utah.edu/publications/widanagamaachchi12/Widanagamaachchi_LDAV2012.pdf", } @Article{SCI:Wol2012a, author = "J.J. Wolff and H. Gu and G. Gerig and J.T. Elison and M. Styner and S. Gouttard and K.N. Botteron and S.R. Dager and G. Dawson and A.M. Estes and A. Evans and H.C. Hazlett and P. Kostopoulos and R.C. McKinstry and S.J. Paterson and R.T. Schultz and L. Zwaigenbaum and J. Piven", title = "Differences in White Matter Fiber Tract Development Present from 6 to 24 Months in Infants with Autism", title_url = "http://ajp.psychiatryonline.org/Article.aspx?ArticleID=668180", journal = "American Journal of Psychiatry ({AJP})", pages = "1--12", year = "2012", note = "Selected as an AJP Best of 2012 paper.", url = "https://publications.utah.edu/publications/wolff12/Wolff_AJP2012-abstract.pdf", url = "https://publications.utah.edu/publications/wolff12/Wolff_AJP2012-final.pdf", } @Article{SCI:Won2012a, author = "P.C. Wong and H.-W. Shen and C.R. Johnson and C. Chen and R.B. Ross", title = "The Top 10 Challenges in Extreme-Scale Visual Analytics", journal = "{IEEE} Computer Graphics and Applications", pages = "63--67", year = "2012", month = "July-August", keywords = "scidac, Large-scale systems, Visual analytics, computer graphics, extreme-scale visual analytics, high-performance computing, interaction, large-data visualization, user interfaces, visual analytics", url = "https://publications.utah.edu/publications/wong12/Wong_TheTop10Challenges2012.pdf", } @Article{SCI:Won2012b, author = "P.C. Wong and H. Shen and V. Pascucci", title = "Extreme-Scale Visual Analytics", journal = "IEEE Computer Graphics and Applications", volume = "32", number = "4", pages = "23--25", year = "2012", url = "https://publications.utah.edu/publications/wong12/Wong_CGA2012.pdf", } @InProceedings{SCI:Yan2012a, author = "C. Yang and I. Jensen and P. Rosen", title = "A Multiscale Approach to Network Event Identification using Geolocated Twitter Data", booktitle = "First IMC Workshop on Internet Visualization (WIV 2012)", pages = "(accepted)", year = "2012", url = "https://publications.utah.edu/publications/yang12/Yang_IMCWIV2012.pdf", } @Article{SCI:Zho2012a, author = "L. Zhou and M. Schott and C.D. Hansen", title = "Transfer Function Combinations", journal = "Computers and Graphics", volume = "36", number = "6", pages = "596--606", year = "2012", month = "October", keywords = "transfer function, volume rendering, classification, user interface, nih, scidac, kaust", url = "https://publications.utah.edu/publications/zhou12/Zhou_elsarticle-TFcombinations_CandG2012.pdf", } @InProceedings{SCI:Zhu2012a, author = "L. Zhu and Y. Gao and A. Yezzi and R.S. MacLeod and J. Cates and A. Tannenbaum", title = "Automatic Segmentation of the Left Atrium from MRI Images using Salient Feature and Contour Evolution", booktitle = "Proceedings of the 34th Annual International Conference of the {IEEE} {EMBS}", pages = "3211--214", year = "2012", url = "https://publications.utah.edu/publications/zhu12/Zhu_EMBC2012.pdf", } @Article{SCI:Zie2012a, author = "T. Ziemek and S. Creem-Regehr and W. Thompson and R.T. Whitaker", title = "Evaluating the effectiveness of orientation indicators with an awareness of individual differences", journal = "ACM Transactions on Applied Perception (TAP)", volume = "9", number = "2", pages = "Article 7", year = "2012", url = "https://publications.utah.edu/publications/ziemek12/Ziemek_TAP2012.pdf", } @Article{SCI:Zie2012b, author = "B.A. Zielinski and J.S. Anderson and A.L. Froehlich and M.B.D. Prigge and J.A. Nielsen and J.R. Cooperrider and A.N. Cariello and P.T. Fletcher and A.L. Alexander and Nicholas Lange and Erin D Bigler and Janet E Lainhart", title = "scMRI Reveals Large-Scale Brain Network Abnormalities in Autism", journal = "PloS one", volume = "7", number = "11", pages = "e49172", year = "2012", url = "https://publications.utah.edu/publications/zielinski12/Zielinski_PlosOne2012.pdf", } @Unpublished{SCI:Ahe2011a, author = "S. Ahern and A. Shoshani and K.L. Ma and A. Choudhary and T. Critchlow and S. Klasky and V. Pascucci", title = "Scientific Discovery at the Exascale: Report from the (DOE) (ASCR) 2011 Workshop on Exascale Data Management, Analysis, and Visualization", year = "2011", month = "January", note = "Office of Scientific and Technical Information (OSTI)", url = "https://publications.utah.edu/publications/Ahe2011a/Exascale-ASCR-Analysis2011.pdf", } @Article{SCI:Ako2011a, author = "N. Akoum and M. Daccarett and C. McGann and N. Segerson and G. Vergara and S. Kuppahally and T. Badger and N. Burgon and T. Haslam and E. Kholmovski and R.S. MacLeod and N.F. Marrouche", title = "Atrial fibrosis helps select the appropriate patient and strategy in catheter ablation of atrial fibrillation: a {DE-MRI} guided approach", journal = "Journal of Cardiovascular Electrophysiology", volume = "22", number = "1", pages = "16--22", year = "2011", url = "https://publications.utah.edu/publications/akoum11/Akoum_JCE2011.pdf", } @Article{SCI:Alt2011a, author = "I. Altrogge and T. Preusser and T. Kroeger and S. Haase and T. Paetz and R.M. Kirby", title = "Sensitivity Analysis for the Optimization of Radiofrequency Ablation in the Presence of Material Parameter Uncertainty", journal = "International Journal for Uncertainty Quantification", year = "2011", keywords = "netl, stochastic sensitivity analysis, stochastic partial di erential equations, stochastic nite element method, adaptive sparse grid, heat transfer, multiscale modeling, representation of uncertainty", url = "https://publications.utah.edu/publications/altrogge11/Altrogge_IJUQ2011.pdf", } @Article{SCI:And2011a, author = "J.R. Anderson and B.W. Jones and C.B. Watt and M.V. Shaw and J.-H. Yang and D. DeMill and J.S. Lauritzen and Y. Lin and K.D. Rapp and D. Mastronarde and P. Koshevoy and B. Grimm and T. Tasdizen and R.T. Whitaker and R.E. Marc", title = "Exploring the Retinal Connectome", journal = "Molecular Vision", volume = "17", pages = "355--379", year = "2011", keywords = "neuroscience, retina, vision, blindness, visus, crcns", url = "https://publications.utah.edu/publications/anderson11/Anderson_MolVis2011.pdf", } @Article{SCI:And2011b, author = "E.W. Anderson and K.C. Potter and L.E. Matzen and J.F. Shepherd and G.A. Preston and C.T. Silva", title = "A User Study of Visualization Effectiveness Using {EEG} and Cognitive Load", journal = "Computer Graphics Forum", volume = "30", number = "3", pages = "791--800", year = "2011", editor = "H. Hauser and H. Pfister and J.J. van Wijk", month = "June", note = "Awarded 2nd Best Paper!", url = "https://publications.utah.edu/publications/And2011b/Anderson_eurovis2011.pdf", } @InProceedings{SCI:And2011c, author = "N. Andrysco and P. Rosen and V. Popescu and B. Benes and K.R. Gurney", title = "Experiences in Disseminating Educational Visualizations", booktitle = "Lecture Notes in Computer Science (7th International Symposium on Visual Computing)", volume = "2", pages = "239--248", year = "2011", month = "September", url = "https://publications.utah.edu/publications/andrysco11/Andrysco.2011.ISVC.pdf", } @Article{SCI:And2011d, author = "J.S. Anderson and J.A. Nielsen and A.L. Froehlich and M.B. DuBray and T.J. Druzgal and A.N. Cariello and J.R. Cooperrider and B.A. Zielinski and C. Ravichandran and P.T. Fletcher and A.L. Alexander and E.D. Bigler and N. Lange and J.E. Lainhart", title = "Functional connectivity magnetic resonance imaging classification of autism", journal = "Brain", pages = "(published online)", year = "2011", url = "https://publications.utah.edu/publications/anderson11/Anderson_Brain2011.pdf", } @Article{SCI:And2011e, author = "J.R. Anderson and S. Mohammed and B.C. Grimm and B.W. Jones and P. Koshevoy and T. Tasdizen and R.T. Whitaker and R.E. Marc", title = "The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets", journal = "Journal of Microscopy", volume = "241", number = "1", pages = "13--28", year = "2011", keywords = "Annotation, automated electron microscopy, citizen science, computational methods, connectome, networks, visualization", url = "https://publications.utah.edu/publications/anderson11/Anderson_JM2011.pdf", } @Article{SCI:Ate2011a, author = "G.A. Ateshian and M.B. Albro and S.A. Maas and J.A. Weiss", title = "{F}inite element implementation of mechanochemical phenomena in neutral deformable porous media under finite deformation", journal = "Journal of Biomechanical Engineering", volume = "133", number = "8", year = "2011", url = "https://publications.utah.edu/publications/ateshian11/Ateshian_JBE2011.pdf", } @Article{SCI:Ben2011a, author = "J.C. Bennett and V. Krishnamoorthy and S. Liu and R.W. Grout and E.R. Hawkes and J.H. Chen and J. Shepherd and V. Pascucci and P.-T. Bremer", title = "Feature-Based Statistical Analysis of Combustion Simulation Data", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2011 {IEEE} Visualization Conference", volume = "17", number = "12", pages = "1822--1831", year = "2011", url = "https://publications.utah.edu/publications/bennett11/Bennett_VIS2011.pdf", } @TechReport{SCI:Ber2011a, author = "M. Berger and J.A. Levine and L.G. Nonato and G. Taubin and C.T. Silva", title = "An End-to-End Framework for Evaluating Surface Reconstruction", number = "UUSCI-2011-001", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-001.pdf", } @Article{SCI:Ber2011c, author = "M.L. Berlanga and S. Phan and E.A. Bushong and S. Lamont and S. Wu and O. Kwon and B.S. Phung and M. Terada and T. Tasdizen and E. Martone and M.H. Ellisman", title = "Three-dimensional reconstruction of serial mouse brain sections using high-resolution large-scale mosaics", journal = "Frontiers in Neuroscience Methods", volume = "5", pages = "(published online)", year = "2011", month = "March", url = "https://publications.utah.edu/publications/berlanga11/fnana-05-00017.pdf", } @InProceedings{SCI:Bha2011a, author = "H. Bhatia and S. Jadhav and P.-T. Bremer and G. Chen and J.A. Levine and L.G. Nonato and V. Pascucci", title = "Edge Maps: Representing Flow with Bounded Error", booktitle = "Proceedings of {IEEE} Pacific Visualization Symposium 2011", pages = "75--82", year = "2011", month = "March", location = "Hong Kong, China", note = "Won Best Paper Award!", url = "https://publications.utah.edu/publications/bhatia11/Bhatia_vfmaps_pacvis11.pdf", } @Article{SCI:Bha2011b, author = "H. Bhatia and S. Jadhav and P.-T. Bremer and G. Chen and J.A. Levine and L.G. Nonato and V. Pascucci", title = "Flow Visualization with Quantified Spatial and Temporal Errors using Edge Maps", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "18", number = "9", pages = "1383--1396", year = "2011", publisher = "{IEEE} Society", url = "https://publications.utah.edu/publications/bhatia11/Bhatia_TVCG2011_EdgeMaps.pdf", } @Article{SCI:Bro2011a, author = "C. Brownlee and V. Pegoraro and S. Shankar and P.S. McCormick and C.D. Hansen", title = "Physically-Based Interactive Flow Visualization Based on Schlieren and Interferometry Experimental Techniques", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "17", number = "11", pages = "1574--1586", year = "2011", keywords = "uintah, c-safe", url = "https://publications.utah.edu/publications/brownlee11/Brownlee_TVCG2011.pdf", } @Article{SCI:Bro2011b, author = "C. Brownlee and V. Pegoraro and S. Shankar and P.S. McCormick and C.D. Hansen", title = "Physically-Based Interactive Flow Visualization Based on Schlieren and Interferometry Experimental Techniques", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "17", number = "11", pages = "1574--1586", year = "2011", series = "IEEE Transactions on Visualization and Computer Graphics", publisher = "IEEE", month = "November", keywords = "Scalar Field Data, GPUs and Multi-core Architectures, Flow Visualization", url = "https://publications.utah.edu/publications/Bro2011b/brownlee_tvcg10.pdf", } @InProceedings{SCI:Bur2011a, author = "B.M. Burton and J.D. Tate and B. Erem and D.J. Swenson and D.F. Wang and D.H. Brooks and P.M. van Dam and R.S. MacLeod", title = "A Toolkit for Forward/Inverse Problems in Electrocardiography within the {SCIRun} Problem Solving Environment", booktitle = "Proceedings of the 2011 {IEEE} Int. Conf. Engineering and Biology Society ({EMBC})", pages = "267--270", year = "2011", url = "https://publications.utah.edu/publications/burton11/Burton_2011BMB_EMBC.pdf", } @Article{SCI:But2011a, author = "C.R. Butson and S.E. Cooper and J.M. Henderson and B. Wolgamuth and C.C. McIntyre", title = "Probabilistic Analysis of Activation Volumes Generated During Deep Brain Stimulation", journal = "NeuroImage", volume = "54", pages = "2096--2104", year = "2011", issn = "1095-9572", url = "https://publications.utah.edu/publications/But2011a/Butson_NeuroImage2011.pdf", } @Article{SCI:But2011b, author = "C.R. Butson and I.O. Miller and R.A. Normann and G.A. Clark", title = "Selective neural activation in a histologically derived model of peripheral nerve", journal = "Journal of Neural Engineering", volume = "8", number = "3", pages = "036009", year = "2011", month = "June", issn = "1741-2552", url = "https://publications.utah.edu/publications/But2011b/Butson_JNE2011.pdf", } @Article{SCI:Buz2011a, author = "G.T. Buzzard and D. Xiu", title = "Variance-based Global Sensitivity Analysis via Sparse-grid Interpolation and Cubature", journal = "Communications in Computational Physics", volume = "9", number = "3", pages = "542--567", year = "2011", keywords = "Stochastic collocation, sparse grids, sensitivity analysis, Smolyak, Sobol", url = "https://publications.utah.edu/publications/buzzard11/Buzzard_CiCP2011.pdf", } @Article{SCI:Can2011a, author = "C.D. Cantwell and S.J. Sherwin and R.M. Kirby and P.H.J. Kelly", title = "From h to p Efficiently: Strategy Selection for Operator Evaluation on Hexahedral and Tetrahedral Elements", journal = "Computers and Fluids", volume = "43", number = "1", pages = "23--28", year = "2011", url = "https://publications.utah.edu/publications/cantwell11/Cantwell_CF2011.pdf", } @Article{SCI:Can2011b, author = "C.D. Cantwell and S.J. Sherwin and R.M. Kirby and P.H.J. Kelly", title = "From h to p Efficiently: Selecting the Optimal Spectral/hp Discretisation in Three Dimensions", journal = "Mathematical Modelling of Natural Phenomena", volume = "6", number = "3", pages = "84--96", year = "2011", url = "https://publications.utah.edu/publications/cantwell11/Cantwell_MMNP2011.pdf", } @Article{SCI:Che2011b, author = "G. Chen and D. Palke and Z. Lin and H. Yeh and P. Vincent and R.S. Laramee and E. Zhang", title = "Asymmetric Tensor Field Visualization for Surfaces", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "17", number = "12", pages = "1979-1988", year = "2011", publisher = "IEEE", month = "Dec", url = "https://publications.utah.edu/publications/Che2011b/Chen_HybridTensorVis_Vis2011.pdf", url = "https://publications.utah.edu/publications/Che2011b/Chen_HybridTensorVis_Vis2011.mov", } @Article{SCI:Che2011c, author = "Guoning Chen and Qingqing Deng and Andrzej Szymczak and Robert S. Laramee and and Eugene Zhang", title = "Morse Set Classification and Hierarchical Refinement using Conley Index", journal = "IEEE Transactions on Visualization and Computer Graphics ({TVCG})", volume = "18", number = "5", pages = "767--782", year = "2011", month = "June", url = "https://publications.utah.edu/publications/Che2011c/Chen_fastMorseDecomp2011.pdf", } @InProceedings{SCI:Cho2011a, author = "A.N.M. Imroz Choudhury and P. Rosen", title = "Abstract Visualization of Runtime Memory Behavior", booktitle = "6th {IEEE} International Workshop on Visualizing Software for Understanding and Analysis ({VISSOFT} 2011)", pages = "22--29", year = "2011", url = "https://publications.utah.edu/publications/choudhury11/Choudhury.2011.VisSoft.pdf", } @InProceedings{SCI:Cua2011a, author = "A. Cuadros-Vargas and L.G. Nonato and V. Pascucci", title = "Combinatorial Laplacian Image Cloning", booktitle = "Proceedings of XXIV Sibgrapi – Conference on Graphics, Patterns and Images", pages = "236--241", year = "2011", url = "https://publications.utah.edu/publications/Cua2011a/paper-86877.pdf", } @Article{SCI:Dac2011a, author = "M. Daccarett and T.J. Badger and N. Akoum and N.S. Burgon and C. Mahnkopf and G.R. Vergara and E.G. Kholmovski and C.J. McGann and D.L. Parker and J. Brachmann and R.S. Macleod and N.F. Marrouche", title = "Association of left atrial fibrosis detected by delayed-enhancement magnetic resonance imaging and the risk of stroke in patients with atrial fibrillation", journal = "Journal of the American College of Cardiology", volume = "57", number = "7", pages = "831--838", year = "2011", keywords = "cibc, mri", url = "https://publications.utah.edu/publications/daccarett11/Daccarett_JACC2011a.pdf", } @Article{SCI:Dac2011b, author = "M. Daccarett and C.J. McGann and N.W. Akoum and R.S. MacLeod and N.F. Marrouche", title = "{MRI} of the left atrium: predicting clinical outcomes in patients with atrial fibrillation", journal = "Expert Review of Cardiovascular Therapy", volume = "9", number = "1", pages = "105--111", year = "2011", keywords = "cibc", url = "https://publications.utah.edu/publications/daccarett11/Daccarett.pdf", } @InProceedings{SCI:Dat2011a, author = "M. Datar and Y. Gur and B. Paniagua and M. Styner and R.T. Whitaker", title = "Geometric Correspondence for Ensembles of Nonregular Shapes", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011)", volume = "6892", pages = "368--375", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", keywords = "namic", url = "https://publications.utah.edu/publications/datar11/Datar_ShapeWorksMICCAI2011.pdf", } @Article{SCI:Dru2011a, author = "N.J. Drury and B.J. Ellis and J.A. Weiss and P.J. McMahon and R.E. Debski", title = "{F}inding consistent strain distributions in the glenohumeral capsule between two subjects: Implications for development of physical examinations", journal = "Journal of Biomechanics", volume = "44", number = "4", pages = "607-613", year = "2011", month = "February", url = "https://publications.utah.edu/publications/drury11/Drury_JBME2011.pdf", } @InProceedings{SCI:Dur2011a, author = "S. Durrleman and M.W. Prastawa and G. Gerig and S. Joshi", title = "Optimal data-driven sparse parameterization of diffeomorphisms for population analysis", booktitle = "Proceedings of the IPMI 2011 conference", volume = "6801/2011", pages = "123--134", year = "2011", series = "Springer LNCS", month = "July", url = "https://publications.utah.edu/publications/durrleman11/Durrleman_LNCS2011.pdf", } @InProceedings{SCI:Dur2011b, author = "S. Durrleman and X. Pennec and A. Trouvé and N. Ayache and J. Braga", title = "Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration", booktitle = "Journal of Human Evolution", pages = "74--88", year = "2011", month = "January", url = "https://publications.utah.edu/publications/Dur2011b/Durrleman_JHE2011.pdf", } @InProceedings{SCI:Edm2011a, author = "M. Edmunds and T. McLoughlin and R.S. Laramee and G. Chen and E. Zhang and N. Max", title = "Automatic Stream Surface Seeding", booktitle = "EUROGRAPHICS 2011 Short Papers", pages = "53--56", year = "2011", url = "https://publications.utah.edu/publications/edmunds11/Edmunds_EG11short2049_AutomaticStreamSurfaceSeeding.pdf", } @Article{SCI:Elk2011a, author = "J.M. Elkins and J.S. Stroud and M.J. Rudert and Y. Tochigi and D.R. Pedersen and B.J. Ellis and J.J. Callaghan and J.A. Weiss and T.D. Brown", title = "{T}he capsule's contribution to total hip construct stability - a finite element analysis", journal = "Journal of Orthopedic Research", volume = "29", number = "11", pages = "1642--1648", year = "2011", month = "November", note = "William Harris, MD Award", url = "https://publications.utah.edu/publications/elkins11/Elkins_JOR2011.pdf", } @PhdThesis{SCI:Ell2011a, author = "B.J. Ellis", title = "Finite element modeling of knee and shoulder ligaments", year = "2011", school = "Department of Bioengineering, University of Utah", note = "Ph.D. Thesis", url = "https://publications.utah.edu/publications/ellis11/BenEllis_Dissertation.pdf", } @InProceedings{SCI:Ere2011a, author = "B. Erem and D.H. Brooks and P.M. van Dam and J.G. Stinstra and R.S. MacLeod", title = "Spatiotemporal Estimation of Activation Times of Fractionated {ECGs} on Complex Heart Surfaces", booktitle = "Proceedings of the International Coference of the {IEEE} Engineering in Medicine and Biology Society ({EMBS})", pages = "5884--5887", year = "2011", url = "https://publications.utah.edu/publications/erem11/Erem_EMBS2011.pdf", } @Article{SCI:Eti2011b, author = "T. Etiene and L.G. Nonato and C. Scheidegger and J. Tierny and T.J. Peters and V. Pascucci and R.M. Kirby and C.T. Silva", title = "Topology Verfication for Isosurface Extraction", journal = "IEEE Transactions on Visualization and Computer Graphics", pages = "(accepted)", year = "2011", url = "https://publications.utah.edu/publications/etiene11/Etiene_TVCG2011.pdf", } @InCollection{SCI:Fis2011a, author = "J. Fishbaugh and S. Durrleman and G. Gerig", title = "Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data", booktitle = "Lecture Notes in Computer Science", pages = "401--408", year = "2011", series = "LNCS 6892", publisher = "Springer", keywords = "na-mic", url = "https://publications.utah.edu/publications/Fis2011a/fishbaugh_miccai2011.pdf", } @InProceedings{SCI:Fle2011a, author = "P.T. Fletcher", title = "Geodesic Regression on Riemannian Manifolds", booktitle = "Proceedings of the Third MICCIA International Workshop on Mathematical Foundations of Computational Anatomy (MFCA)", pages = "75--86", year = "2011", location = "Toronto, Canada", url = "https://publications.utah.edu/publications/fletcher11/Fletcher_MFCA2011.pdf", } @Article{SCI:Fle2011b, author = "P.T. Fletcher and J. Moeller and J. Phillips and S. Venkatasubramanian", title = "Horoball hulls and extents in positive definite space", journal = "Algorithms and Data Structures", volume = "6844/2011", pages = "386--398", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", url = "https://publications.utah.edu/publications/fletcher11/Fletcher_ADS2011.pdf", } @InProceedings{SCI:Fog2011a, author = "T. Fogal and J. Krüger", title = "Efficient {I/O} for Parallel Visualization", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2011)", pages = "81--90", year = "2011", editor = "T. Kuhlen and R. Pajarola and K. Zhou", url = "https://publications.utah.edu/publications/Fog2011a/Fogal_PracticalIO.pdf", } @Article{SCI:Fow2011a, author = "C. Fowlkes and K. Eckenrode and M. Bragdon and M.D. Meyer and Z. Wunderlich and L. Simirenko and C. Luengo and S. Keranen and C. Henriquez and D. Knowles and M. Biggin and M. Eisen and A. DePace", title = "A Conservered Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila", journal = "PLoS Genetics", volume = "7", number = "10:e1002346", pages = "17 pages", year = "2011", month = "October", url = "https://publications.utah.edu/publications/fowlkes11/Fowlkes_PLoS2011.pdf", } @Article{SCI:Fu2011a, author = "Z. Fu and W.-K. Jeong and Y. Pan and R.M. Kirby and R.T. Whitaker", title = "A fast iterative method for solving the Eikonal equation on triangulated surfaces", journal = "SIAM Journal of Scientific Computing", volume = "33", number = "5", pages = "2468--2488", year = "2011", url = "https://publications.utah.edu/publications/fu11/Fu_SIAM-JSC2011.pdf", } @Article{SCI:Gen2011a, author = "S.E. Geneser and J.D. Hinkle and R.M. Kirby and Bo Wang and B. Salter and S. Joshi", title = "Quantifying variability in radiation dose due to respiratory-induced tumor motion", journal = "Medical Image Analysis", volume = "15", number = "4", pages = "640--649", year = "2011", url = "https://publications.utah.edu/publications/geneser11/Geneser_MIA2011.pdf", } @Article{SCI:Ger2011c, author = "G. Gerig and I. Oguz and S. Gouttard and J. Lee and H. An and W. Lin and M. McMurray and K. Grewen and J. Johns and M.A. Styner", title = "Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse", journal = "Frontiers in Child and Neurodevelopmental Psychiatry", volume = "2", pages = "9 pages", year = "2011", editor = "Linda Mayes", issn = "1664-0640", url = "https://publications.utah.edu/publications/gerig11/Gerig_FCNP2011.pdf", } @Article{SCI:Ger2011d, author = "G. Gerig and J.H. Gilmore and W. Lin", title = "Brain Maturation of Newborns and Infants", journal = "Encyclopedia on Early Childhood Development (online): Brain Development in Children - According to Experts", journal_url = "http://www.child-encyclopedia.com/en-ca/child-brain/according-to-experts.html", pages = "1--6", year = "2011", publisher = "Centre of Excellence for Early Childhood Development and Strategic Knowledge Cluster on Early Child Development", location = "Montreal, Quebec", url = "https://publications.utah.edu/publications/gerig11/Gerig-Gilmore-LinANGxp1.pdf", } @InProceedings{SCI:Gey2011a, author = "T. Geymayer and A. Lex and M. Streit and D. Schmalstieg", title = "Visualizing the Effects of Logically Combined Filters", booktitle = "Proceedings of the Conference on Information Visualisation (IV '11)", pages = "47--52", year = "2011", publisher = "IEEE", url = "https://publications.utah.edu/publications/Gey2011a/2011_iv_filter-pipeline.pdf", } @Article{SCI:Gop2011a, author = "G. Gopalakrishnan and R.M. Kirby and S. Siegel and R. Thakur and W. Gropp and E. Lusk and B.R. de Supinski and M. Schultz and G. Bronevetsky", title = "Formal Analysis of {MPI-Based} Parallel Programs: Present and Future", journal = "Communications of the {ACM}", pages = "(accepted)", year = "2011", url = "https://publications.utah.edu/publications/gopalakrishnan11/Gopalakrishnan_ACM2011.pdf", } @InProceedings{SCI:Gru2011a, author = "J. Grueninger and H. Hoffman and U. Kloos and J. Krüger", title = "Multi-Resolution-Display System for Virtual Reality Setups", booktitle = "Proceedings of the 14th International Conference on Human-Computer Interaction, HCI International", volume = "6779/2011", pages = "180--189", year = "2011", series = "Lecture Notes in Computer Science", url = "https://publications.utah.edu/publications/Gru2011a/Gruninger_HCI2011.pdf", } @InProceedings{SCI:Gyu2011a, author = "Attila Gyulassy and J.A. Levine and V. Pascucci", title = "Visualization of Discrete Gradient Construction (Multimedia submission)", booktitle = "Proceedings of the 27th Symposium on Computational Geometry", pages = "289--290", year = "2011", publisher = "ACM", month = "June", location = "Paris, France", url = "https://publications.utah.edu/publications/gyulassy11/Gyulassy_SymCompGeo2011.pdf", } @InProceedings{SCI:Ha2011a, author = "L.K. Ha and J. Krüger and J. Comba and S. Joshi and C.T. Silva", title = "Optimal Multi-Image Processing Streaming Framework on Parallel Heterogeneous Systems", booktitle = "Proceedings of Eurographics Symposium on Parallel Graphics and Visualization 2011", pages = "1--10", year = "2011", note = "Awarded Best Paper!", url = "https://publications.utah.edu/publications/Ha2011a/Ha_MIP-egpgv2011.pdf", } @Article{SCI:Ha2011b, author = "L.K. Ha and M.W. Prastawa and G. Gerig and J.H. Gilmore and C.T. Silva", title = "Efficient Probabilistic and Geometric Anatomical Mapping Using Particle Mesh Approximation on GPUs", journal = "International Journal of Biomedical Imaging, Special Issue in Parallel Computation in Medical Imaging Applications", volume = "2011", pages = "16 pages", year = "2011", note = "Article ID 572187", url = "https://publications.utah.edu/publications/ha11/Ha_IJBI2011.pdf", } @InBook{SCI:Ha2011c, author = "L.K. Ha and J. Krüger and S. Joshi and C.T. Silva", title = "Multi-scale Unbiased Diffeomorphic Atlas Construction on Multi-GPUs", volume = "1", pages = "42", year = "2011", chapter = "10", publisher = "Morgan Kaufmann", url = "https://publications.utah.edu/publications/Ha2011c/Ha_GPUCG2011.pdf", } @Article{SCI:Hao2011b, author = "X. Hao and R.T. Whitaker and P.T. Fletcher", title = "Adaptive Riemannian Metrics for Improved Geodesic Tracking of White Matter", journal = "Information Processing in Medical Imaging (IPMI)", volume = "6801/2011", pages = "13--24", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", keywords = "namic", url = "https://publications.utah.edu/publications/hao11/Hao_IPMI2011.pdf", } @Article{SCI:Har2011a, author = "D.E. Hart and M. Berzins and C.E. Goodyer and P.K. Jimack", title = "Using Adjoint Error Estimation Techniques for Elastohydrodynamic Lubrication Line Contact Problems", journal = "International Journal for Numerical Methods in Fluids", volume = "67", pages = "1559--1570", year = "2011", note = "Published online 29 October", keywords = "EHL", url = "https://publications.utah.edu/publications/hart11/Hart_HBGJ10.pdf", } @Article{SCI:Haz2011a, author = "H.C. Hazlett and M. Poe and G. Gerig and M. Styner and C. Chappell and R.G. Smith and C. Vachet and J. Piven", title = "Early Brain Overgrowth in Autism Associated with an Increase in Cortical Surface Area Before Age 2", journal = "Arch of Gen Psych", volume = "68", number = "5", pages = "467--476", year = "2011", url = "https://publications.utah.edu/publications/hazlett11/Hazlett_AGP2011.pdf", } @Article{SCI:Hen2011a, author = "C.R. Henak and B.J. Ellis and M.D. Harris and A.E. Anderson and C.L. Peters and J.A. Weiss", title = "{R}ole of the acetabular labrum in load support across the hip joint", journal = "Journal of Biomechanics", volume = "44", number = "12", pages = "2201-2206", year = "2011", url = "https://publications.utah.edu/publications/henak11/Henak_JBM2011.pdf", } @InProceedings{SCI:Hog2011a, author = "L. Hogrebe and A. Paiva and E. Jurrus and C. Christensen and M. Bridge and J.R. Korenberg and T. Tasdizen", title = "Trace Driven Registration of Neuron Confocal Microscopy Stacks", booktitle = "{IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "1345--1348", year = "2011", url = "https://publications.utah.edu/publications/hogrebe11/Hogrebe_ISBI2011.pdf", } @Article{SCI:Iri2011a, author = "A. Irimia and M.C. Chambers and J.R. Alger and M. Filippou and M.W. Prastawa and Bo Wang and D. Hovda and G. Gerig and A.W. Toga and R. Kikinis and P.M. Vespa and J.D. Van Horn", title = "Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes", journal = "Journal of Neurotrauma", volume = "28", number = "11", pages = "2287--2306", year = "2011", month = "November", keywords = "namic", url = "https://publications.utah.edu/publications/irimia11/Irimia_JNeuro2011.pdf", } @Article{SCI:Isa2011a, author = "B.M. Isaacson and J.G. Stinstra and R.D. Bloebaum and COL P.F. Pasquina and R.S. MacLeod", title = "Establishing Multiscale Models for Simulating Whole Limb Estimates of Electric Fields for Osseointegrated Implants", journal = "IEEE Transactions on Biomedical Engineering", volume = "58", number = "10", pages = "2991--2994", year = "2011", url = "https://publications.utah.edu/publications/isaacson11/Isaacson_TBE2011.pdf", } @Article{SCI:Isa2011b, author = "S.A. Isaacson and R.M. Kirby", title = "Numerical Solution of Linear Volterra Integral Equations of the Second Kind with Sharp Gradients", journal = "Journal of Computational and Applied Mathematics", volume = "235", number = "14", pages = "4283--4301", year = "2011", url = "https://publications.utah.edu/publications/isaacson11/Isaacson_JCAM2011.pdf", } @Article{SCI:Ize2011a, author = "T. Ize and C.D. Hansen", title = "RTSAH Traversal Order for Occlusion Rays", journal = "Computer Graphics Forum", volume = "30", number = "2", pages = "297--305", year = "2011", publisher = "Wiley-Blackwell", month = "April", url = "https://publications.utah.edu/publications/Ize2011a/Ize_rtsah2011.pdf", } @InProceedings{SCI:Ize2011b, author = "T. Ize and C. Brownlee and C.D. Hansen", title = "Real-Time Ray Tracer for Visualizing Massive Models on a Cluster", booktitle = "Proceedings of the 2011 Eurographics Symposium on Parallel Graphics and Visualization", pages = "61--69", year = "2011", url = "https://publications.utah.edu/publications/ize11/Ize_EGPGV2011.pdf", } @InCollection{SCI:Jad2011a, author = "S. Jadhav and H. Bhatia and P.-T. Bremer and J.A. Levine and L.G. Nonato and V. Pascucci", title = "Consistent Approximation of Local Flow Behavior for 2D Vector Fields", booktitle = "Mathematics and Visualization", pages = "141--159", year = "2011", publisher = "Springer", month = "Nov", url = "https://publications.utah.edu/publications/Jad2011a/Jadhav_Topo2012_Local2DFlow.pdf", } @Article{SCI:Jak2011a, author = "J. Jakeman and R. Archibald and D. Xiu", title = "Characterization of Discontinuities in High-dimensional Stochastic Problmes on Adaptive Sparse Grids", journal = "Journal of Computational Physics", volume = "230", number = "10", pages = "3977--3997", year = "2011", keywords = "Adaptive sparse grids, Stochastic partial differential equations, Multivariate discontinuity detection, Generalized polynomial chaos method, High-dimensional approximation", url = "https://publications.utah.edu/publications/jakeman11/Jakeman_JCP2011.pdf", } @InProceedings{SCI:Jia2011b, author = "F. Jiao and Y. Gur and C.R. Johnson and S. Joshi", title = "Detection of crossing white matter fibers with high-order tensors and rank-k decompositions", booktitle = "Proceedings of the International Conference on Information Processing in Medical Imaging (IPMI 2011)", volume = "6801", pages = "538--549", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", url = "https://publications.utah.edu/publications/jiao11/Jiao_IPMI2011_Tensor_Decompositions.pdf", } @Article{SCI:Jim2011a, author = "P.K. Jimack and R.M. Kirby", title = "Towards the Development on an h-p-Refinement Strategy Based Upon Error Estimate Sensitivity", journal = "Computers and Fluids", volume = "46", number = "1", pages = "277--281", year = "2011", url = "https://publications.utah.edu/publications/jimack11/Jimack_CF2011.pdf", } @InProceedings{SCI:Jur2011a, author = "E. Jurrus and S. Watanabe and R. Guily and A.R.C. Paiva and M.H. Ellisman and E.M. Jorgensen and T. Tasdizen", title = "Semi-automated Neuron Boundary Detection and Slice Traversal Algorithm for Segmentation of Neurons from Electron Microscopy Images", booktitle = "Microscopic Image Analysis with Applications in Biology (MIAAB) Workshop", year = "2011", url = "https://publications.utah.edu/publications/jurrus11/Jurrus_MIAAB2011.pdf", } @Article{SCI:Kel2011a, author = "Y. Keller and Y. Gur", title = "A Diffusion Approach to Network Localization", journal = "{IEEE} Transactions on Signal Processing", volume = "59", number = "6", pages = "2642--2654", year = "2011", url = "https://publications.utah.edu/publications/keller11/sensor_ localization_one_column_sub.pdf", } @Unpublished{SCI:Key2011a, author = "D. Keyes and V. Taylor and T. Hey and S. Feldman and G. Allen and P. Colella and P. Cummings and F. Darema and J. Dongarra and T. Dunning and M. Ellisman and I. Foster and W. Gropp and C.R. Johnson and C. Kamath and R. Madduri and M. Mascagni and S.G. Parker and P. Raghavan and A. Trefethen and S. Valcourt and A. Patra and F. Choudhury and C. Cooper and P. McCartney and M. Parashar and T. Russell and B. Schneider and J. Schopf and N. Sharp", title = "Advisory Committee for CyberInfrastructure Task Force on Software for Science and Engineering", year = "2011", note = "NSF Report", url = "https://publications.utah.edu/publications/Key2011a/TaskForceReport_Software.pdf", } @InProceedings{SCI:Kim2011a, author = "S.H. Kim and V. Fonov and J. Piven and J. Gilmore and C. Vachet and G. Gerig and D.L. Collins and M. Styner", title = "Spatial Intensity Prior Correction for Tissue Segmentation in the Developing human Brain", booktitle = "Proceedings of {IEEE} {ISBI} 2011", pages = "2049--2052", year = "2011", url = "https://publications.utah.edu/publications/kim11/Kim_ISBI2011.pdf", } @Article{SCI:Kir2011a, author = "R.M. Kirby and B. Cockburn and S.J. Sherwin", title = "To {CG} or to {HDG:} A Comparative Study", journal = "Journal of Scientific Computing", year = "2011", note = "published online", url = "https://publications.utah.edu/publications/kirby11/Kirby_JSC2011.pdf", } @Article{SCI:Kni2011a, author = "R.C. Knickmeyer and C. Kang and S. Woolson and K.J. Smith and R.M. Hamer and W. Lin and G. Gerig and M. Styner and J.H. Gilmore", title = "Twin-Singleton Differences in Neonatal Brain Structure", journal = "Twin Research and Human Genetics", volume = "14", number = "3", pages = "268--276", year = "2011", issn = "1832-4274", url = "https://publications.utah.edu/publications/knickmeyer11/Knickmeyer_nihms309699.pdf", } @InProceedings{SCI:Kno2011a, author = "A. Knoll and S. Thelen and I. Wald and C.D. Hansen and H. Hagen and M.E. Papka", title = "Full-Resolution Interactive {CPU} Volume Rendering with Coherent {BVH} Traversal", booktitle = "Proceedings of {IEEE} Pacific Visualization 2011", pages = "3--10", year = "2011", url = "https://publications.utah.edu/publications/knoll11/PacificVis2011.pdf", } @Article{SCI:Kop2011a, author = "B.H. Kopell and J. Halverson and C.R. Butson and M. Dickinson and J. Bobholz and H. Harsch and C. Rainey and D. Kondziolka and R. Howland and E. Eskandar and K.C. Evans and D.D. Dougherty", title = "Epidural cortical stimulation of the left dorsolateral prefrontal cortex for refractory major depressive disorder", journal = "Neurosurgery", volume = "69", number = "5", pages = "1015--1029", year = "2011", month = "November", issn = "1524-4040", url = "https://publications.utah.edu/publications/Kop2011a/Kopell_Neurosurgery2011.pdf", } @InProceedings{SCI:Kum2011a, author = "S. Kumar and V. Vishwanath and P. Carns and B. Summa and G. Scorzelli and V. Pascucci and R. Ross and J. Chen and H. Kolla and R. Grout", title = "{PIDX}: Efficient Parallel {I/O} for Multi-resolution Multi-dimensional Scientific Datasets", booktitle = "Proceedings of The {IEEE} International Conference on Cluster Computing", pages = "103--111", year = "2011", month = "September", url = "https://publications.utah.edu/publications/kumar11/Kumar_ICCC2011.pdf", } @InProceedings{SCI:Len2011a, author = "Z. Leng and J.R. Korenberg and B. Roysam and T. Tasdizen", title = "A rapid {2-D} centerline extraction method based on tensor voting", booktitle = "2011 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro", pages = "1000--1003", year = "2011", url = "https://publications.utah.edu/publications/leng11/Leng_ISBI2011.pdf", } @Article{SCI:Lex2011a, author = "A. Lex and H. Schulz and M. Streit and C. Partl and D. Schmalstieg", title = "VisBricks: Multiform Visualization of Large, Inhomogeneous Data", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '11)", volume = "17", number = "12", year = "2011", url = "https://publications.utah.edu/publications/Lex2011a/2011_infovis_visbricks.pdf", } @Article{SCI:Li2011a, author = "G. Li and R. Palmer and M. DeLisi and G. Gopalakrishnan and R.M. Kirby", title = "Formal Specification of {MPI} 2.0: Case Study in Specifying a Practical Concurrent Programming {API}", journal = "Science of Computer Programming", volume = "76", pages = "65--81", year = "2011", url = "https://publications.utah.edu/publications/li11/Li_SCP2011.pdf", } @Article{SCI:Li2011b, author = "J. Li and J. Li and D. Xiu", title = "An Efficient Surrogate-based Method for Computing Rare Failure Probability", journal = "Journal of Computational Physics", volume = "230", number = "24", pages = "8683--8697", year = "2011", keywords = "Rare events, Failure probability, Importance sampling, Cross-entropy", url = "https://publications.utah.edu/publications/li11/Li_JCP2011.pdf", } @TechReport{SCI:Lin2011a, author = "L. Lins and D. Koop and J. Freire and C.T. Silva", title = "DEFOG: A System for Data-Backed Visual Composition", number = "UUSCI-2011-003", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-003.pdf", } @Article{SCI:Liu2011a, author = "W. Liu and S. Awate and J. Anderson and D. Yurgelun-Todd and P.T. Fletcher", title = "Monte Carlo expectation maximization with hidden Markov models to detect functional networks in resting-state fMRI", journal = "Machine Learning in Medical Imaging", volume = "7009/2011", pages = "59--66", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", url = "https://publications.utah.edu/publications/liu11/Liu_MLMI2011.pdf", } @Article{SCI:Lui2011a, author = "J. Luitjens and M. Berzins", title = "Scalable parallel regridding algorithms for block-structured adaptive mesh renement", journal = "Concurrency And Computation: Practice And Experience", volume = "23", number = "13", pages = "1522--1537", year = "2011", publisher = "John Wiley & Sons, Ltd.", issn = "1532--0634", keywords = "adaptive mesh refinement, regridding, remeshing, scalability", url = "https://publications.utah.edu/publications/Lui2011a/Luitjens-Berzins_CCPE2011.pdf", } @PhdThesis{SCI:Lui2011b, author = "J.P. Luitjens", title = "The Scalability of Parallel Adaptive Mesh Refinement Within Uintah", year = "2011", school = "School of Computing, University of Utah", note = "Advisor: Martin Berzins", url = "https://publications.utah.edu/publications/Lui2011b/JLuitjens_PhDThesis2011.pdf", } @Article{SCI:Lui2011c, author = "J. Luitjens and M. Berzins", title = "Scalable parallel regridding algorithms for block-structured adaptive mesh refinement", journal = "Concurrency and Computation: Practice and Experience", volume = "23", number = "13", pages = "1522--1537", year = "2011", month = "September", url = "https://publications.utah.edu/publications/Lui2011c/Luitjens_CCPE2011.pdf", } @TechReport{SCI:Maa2011a, author = "S.A. Maas and B.J. Ellis and D.S. Rawlins and L.T. Edgar and C.R. Henak and J.A. Weiss", title = "Implementation and Verification of a Nodally-Integrated Tetrahedral Element in FEBio", number = "UUSCI-2011-007", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "MRL", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-007.pdf", } @InCollection{SCI:Mac2011a, author = "R.S. MacLeod and J.J.E. Blauer", title = "Atrial Fibrillation", booktitle = "Multimodal Cardiovascular Imaging: Principles and Clinical Applications", year = "2011", editor = "O. Pahlm and G. Wagner", chapter = "25", publisher = "McGraw Hill", isbn = "0071613463", keywords = "ablation, carma, cvrti, 5P41-RR012553-10", url = "https://publications.utah.edu/publications/macleod13/MacLeod_AfibChapter2013.pdf", } @InProceedings{SCI:Man2011a, author = "J. Mandel and J.D. Beezley and A. Kochanski and V.Y. Kondratenko and L. Zhang and E. Anderson and J. Daniels II and C.T. Silva and C.R. Johnson", title = "A wildland fire modeling and visualization environment", title_url = "http://ams.confex.com/ams/9FIRE/webprogram/Paper192277.html", booktitle = "Proceedings of the Ninth Symposium on Fire and Forest Meteorology", pages = "(published online)", year = "2011", keywords = "vistrails, wildland fire modeling, openwfm.org", url = "https://publications.utah.edu/publications/mandel11/Mandel_9fire2011.pdf", } @Article{SCI:Mar2011a, author = "T. Martin and E. Cohen and R.M. Kirby", title = "Direct Isosurface Visualization of Hex-Based High-Order Geometry and Attribute Representations", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "PP", number = "99", pages = "1--14", year = "2011", issn = "1077-2626", url = "https://publications.utah.edu/publications/martin11/Martin_TVCG2011.pdf", } @Article{SCI:Mcg2011a, author = "C.J. McGann and E.G. Kholmovski and J.J. Blauer and S. Vijayakumar and T.S. Haslam and J.E. Cates and E.V. DiBella and N.S. Burgon and B. Wilson and A.J. Alexander and M.W. Prastawa and M. Daccarett and G. Vergara and N.W. Akoum and D.L. Parker and R.S. MacLeod and N.F. Marrouche", title = "Dark Regions of No-Reflow on Late Gadolinium Enhancement Magnetic Resonance Imaging Result in Scar Formation After Atrial Fibrillation Ablation", journal = "Journal of the American College of Cardiology", volume = "58", number = "2", pages = "177--185", year = "2011", url = "https://publications.utah.edu/publications/mcgann11/McGann_JACC2011.pdf", } @InProceedings{SCI:Men2011a, author = "Q. Meng and M. Berzins and J. Schmidt", title = "Using Hybrid Parallelism to improve memory use in Uintah", booktitle = "Proceedings of the TeraGrid 2011 Conference", year = "2011", publisher = "ACM", month = "July", location = "Salt Lake City, Utah", keywords = "Uintah, C-SAFE, parallel computing", url = "https://publications.utah.edu/publications/Men2011a/Meng_Tgrid11.pdf", } @Article{SCI:Mir2011a, author = "H. Mirzaee and Liangyue and J.K. Ryan and R.M. Kirby", title = "Smoothness-Increasing Accuracy-Conserving ({SIAC}) Postprocessing for Discontinuous Galerkin Solutions Over Structured Triangular Meshes", journal = "{SIAM} Journal of Numerical Analysis", volume = "49", number = "5", pages = "1899--1920", year = "2011", url = "https://publications.utah.edu/publications/mirzaee11/Mirzaee_JNA2011.pdf", } @Article{SCI:Mir2011b, author = "H. Mirzaee and J.K. Ryan and R.M. Kirby", title = "Efficient Implementation of Smoothness-Increasing Accuracy-Conserving ({SIAC}) Filters for Discontinuous Galerkin Solutions", journal = "Journal of Scientific Computing", pages = "(in press)", year = "2011", url = "https://publications.utah.edu/publications/mirzaee11/Mirzaee_JSC2011.pdf", } @Article{SCI:Mlo2011a, author = "M.J. Mlodzianoski and J.M. Schreiner and S.P. Callahan and K. Smolková and A. Dlasková and J. Šantorová and P. Ježek and J. Bewersdorf", title = "Sample drift correction in 3D fluorescence photoactivation localization microscopy", journal = "Optics Express", volume = "19", number = "16", pages = "15009--15019", year = "2011", url = "https://publications.utah.edu/publications/mlodzianoski11/Mlodzianoski_OptExpress2011.pdf", } @Article{SCI:Mur2011a, author = "C. Muralidhara and A.M. Gross and R.R. Gutell and O. Alter", title = "Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal {RNA}", journal = "{PLoS} {ONE}", volume = "6", number = "4", pages = "e18768", year = "2011", publisher = "Public Library of Science", month = "April", url = "https://publications.utah.edu/publications/muralidhara11/Muralidhara_PLoSOne2011.pdf", url = "https://publications.utah.edu/publications/muralidhara11/Muralidhara_PLoSOne2011-appendix.pdf", } @Article{SCI:Nar2011a, author = "A. Narayan and D. Xiu", title = "Distributional Sensitivity for Uncertainty Quantification", journal = "Communications in Computational Physics", volume = "10", number = "1", pages = "140--160", year = "2011", keywords = "Uncertainty quantification, epistemic uncertainty, distributional sensitivity, generalized polynomial chaos", url = "https://publications.utah.edu/publications/narayan11/Narayan_CiCP2011.pdf", } @Article{SCI:Nel2011a, author = "B. Nelson and R. Haimes and R.M. Kirby", title = "{GPU}-Based Interactive Cut-Surface Extraction From High-0rder Finite Element Fields", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({IEEE} Visualization Issue)", volume = "17", number = "12", pages = "1803--1811", year = "2011", url = "https://publications.utah.edu/publications/nelson11/GPU-BasedInteractiveCut-SurfaceExtractionFromHigh-OrderFiniteElementFields.pdf", } @Unpublished{SCI:Ode2011a, author = "J.T. Oden and O. Ghattas and J.L. King and B.I. Schneider and K. Bartschat and F. Darema and J. Drake and T. Dunning and D. Estep and S. Glotzer and M. Gurnis and C.R. Johnson and D.S. Katz and D. Keyes and S. Kiesler and S. Kim and J. Kinter and G. Klimeck and C.W. McCurdy and R. Moser and C. Ott and A. Patra and L. Petzold and T. Schlick and K. Schulten and V. Stodden and J. Tromp and M. Wheeler and S.J. Winter and C. Wu and K. Yelick", title = "Cyber Science and Engineering: A Report of the National Science Foundation Advisory Committee for Cyberinfrastructure Task Force on Grand Challenges", year = "2011", note = "NSF Report", url = "https://publications.utah.edu/publications/Ode2011a/TaskForceReport_GrandChallenges.pdf", } @Article{SCI:Pan2011a, author = "Y. Pan and W.-K. Jeong and R.T. Whitaker", title = "Markov surfaces: A probabilistic framework for user-assisted three-dimensional image segmentation", journal = "Computer Vision and Image Understanding", volume = "115", number = "10", pages = "1375--1383", year = "2011", url = "https://publications.utah.edu/publications/pan11/Pan_markovsurface2012.pdf", } @Book{SCI:Pas2011a, author = "Valerio Pascucci and Xavier Tricoche and Hans Hagen and Julien Tierny", title = "Topological Methods in Data Analysis and Visualization: Theory, Algorithms, and Applications (Mathematics and Visualization)", title_url = "http://www.amazon.com/Topological-Methods-Data-Analysis-Visualization/dp/3642150136/ref=sr_1_5?ie=UTF8&s=books&qid=1296389542&sr=1-5", year = "2011", publisher = "Springer", isbn = "978-3642150135", } @InProceedings{SCI:Pet2011a, author = "T. Peterka and R. Ross and A. Gyulassy and V. Pascucci and W. Kendall and H.-W. Shen and T.-Y. Lee and A. Chaudhuri", title = "Scalable Parallel Building Blocks for Custom Data Analysis", booktitle = "Proceedings of the 2011 {IEEE} Symposium on Large-Scale Data Analysis and Visualization ({LDAV})", pages = "105--112", year = "2011", month = "October", url = "https://publications.utah.edu/publications/Pet2011a/Peterka_LDAV2011.pdf", } @InProceedings{SCI:Phi2011a, author = "S. Philip and B. Summa and P.-T. Bremer and and V. Pascucci", title = "Parallel Gradient Domain Processing of Massive Images", booktitle = "Proceedings of the 2011 Eurographics Symposium on Parallel Graphics and Visualization", pages = "11--19", year = "2011", url = "https://publications.utah.edu/publications/philip11/parallel-panorama.pdf", } @InProceedings{SCI:Phi2011b, author = "S. Philip and B. Summa and P-T Bremer and V. Pascucci", title = "Hybrid CPU-GPU Solver for Gradient Domain Processing of Massive Images", booktitle = "Proceedings of 2011 International Conference on Parallel and Distributed Systems (ICPADS)", pages = "244--251", year = "2011", url = "https://publications.utah.edu/publications/philip11/hybrid-panorama.pdf", } @Article{SCI:Qui2011a, author = "T.A. Quinn and S. Granite and M.A. Allessie and C. Antzelevitch and C. Bollensdorff and G. Bub and R.A.B. Burton and E. Cerbai and P.S. Chen and M. Delmar and D. DiFrancesco and Y.E. Earm and I.R. Efimov and M. Egger and E. Entcheva and M. Fink and R. Fischmeister and M.R. Franz and A. Garny and W.R. Giles and T. Hannes and S.E. Harding and P.J. Hunter and s and G. Iribe and J. Jalife and C.R. Johnson and R.S. Kass and I. Kodama and G. Koren and P. Lord and V.S. Markhasin and S. Matsuoka and A.D. McCulloch and G.R. Mirams and G.E. Morley and S. Nattel and D. Noble and S.P. Olesen and A.V. Panfilov and N.A. Trayanova and U. Ravens and S. Richard and D.S. Rosenbaum and Y. Rudy and F. Sachs and F.B. Sachse and D.A. Saint and U. Schotten and O. Solovyova and P. Taggart and L. Tung and A. Varr{\`o} and P.G. Volders and K. Wang and J.N. Weiss and E. Wettwer and E. White and R. Wilders and R.L. Winslow and P. Kohl", title = "Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing", journal = "Progress in Biophysics and Molecular Biology", volume = "107", number = "1", pages = "4--10", year = "2011", publisher = "Elsevier", month = "October", keywords = "Minimum Information Standard; Cardiac electrophysiology; Data sharing; Reproducibility; Integration; Computational modelling", url = "https://publications.utah.edu/publications/Qui2011a/MICEE_ PBMB2011.pdf", } @InProceedings{SCI:Rei2011a, author = "W. Reich and Dominic Schneider and Christian Heine and Alexander Wiebel and Guoning Chen and Gerik Scheuermann", title = "Combinatorial Vector Field Topology in 3 Dimensions", booktitle = "Mathematical Methods in Biomedical Image Analysis ({MMBIA}) Proceedings {IEEE} {MMBIA} 2012", pages = "47--59", year = "2011", month = "November", url = "https://publications.utah.edu/publications/Rei2011a/Reich_TopoInVis2011_3dMorse.pdf", } @Article{SCI:Ros2011a, author = "P. Rosen and V. Popescu and K. Hayward and C. Wyman", title = "Non-Pinhole Approximations for Interactive Rendering", journal = "IEEE Computer Graphics and Applications", volume = "99", year = "2011", url = "https://publications.utah.edu/publications/rosen11/CG_CGA-2010-01-0001.R1_Rosen.pdf", } @Article{SCI:Ros2011b, author = "P. Rosen and V. Popescu", title = "An Evaluation of 3-D Scene Exploration Using a Multiperspective Image Framework", journal = "The Visual Computer", volume = "27", number = "6-8", pages = "623--632", year = "2011", publisher = "Springer-Verlag New York, Inc.", keywords = "Interactive 3-D scene exploration, Navigation, Occlusions, User study, Visual interfaces", url = "https://publications.utah.edu/publications/Ros2011b/Rosen_CGI2011.pdf", } @InProceedings{SCI:Sad2011a, author = "N. Sadeghi and M.W. Prastawa and P.T. Fletcher and J.H. Gilmore and W. Lin and G. Gerig", title = "Statistical Growth Modeling of Longitudinal {DT-MRI} for Regional Characterization of Early Brain Development", booktitle = "Proceedings of the Medical Image Computing and Computer Assisted Intervention ({MICCAI}) 2011 Workshop on Image Analysis of Human Brain Development", pages = "1507--1510", year = "2011", keywords = "namic", url = "https://publications.utah.edu/publications/sadeghi/Sadeghi_MICCIA2011.pdf", } @Article{SCI:Sal2011a, author = "B. Salter and B. Wang and M. Sadinski and S. Ruhnau and V. Sarkar and J. Hinkle and Y. Hitchcock and K. Kokeny and S. Joshi", title = "WE-E-BRC-06: Comparison of Two Methods of Contouring Internal Target Volume on Multiple 4DCT Data Sets from the Same Subjects: Maximum Intensity Projection and Combination of 10 Phases", journal = "Medical Physics", volume = "38", number = "6", pages = "3820", year = "2011", url = "https://publications.utah.edu/publications/salter11/Salter_MedPhys_WE-E-BRC-06.pdf", } @Article{SCI:Sam2011a, author = "R. Samuel and H.J. Sant and F. Jiao and C.R. Johnson and B.K. Gale", title = "Microfluidic laminate-based phantom for diffusion tensor-magnetic resonance imaging", journal = "Journal of Micromech. Microeng.", volume = "21", pages = "095027--095038", year = "2011", url = "https://publications.utah.edu/publications/samuel11/Samuel_JMM2011.pdf", } @Article{SCI:Sch2011a, author = "M. Schott and A.V.P. Grosset and T. Martin and V. Pegoraro and S.T. Smith and C.D. Hansen", title = "Depth of Field Effects for Interactive Direct Volume Rendering", journal = "Computer Graphics Forum", volume = "30", number = "3", pages = "941--950", year = "2011", editor = "H. Hauser and H. Pfister and J.J. van Wijk", publisher = "Wiley-Blackwell", month = "jun", url = "https://publications.utah.edu/publications/Sch2011a/Schott_EuroVis11.pdf", url = "https://publications.utah.edu/publications/Sch2011a/Schott_EuroVis11DepthOfFieldDVRVideo.mov", } @InProceedings{SCI:Sch2011b, author = "M. Schulz and J.A. Levine and P.-T. Bremer and T. Gamblin and V. Pascucci", title = "Interpreting Performance Data Across Intuitive Domains", booktitle = "International Conference on Parallel Processing", pages = "206--215", year = "2011", publisher = "IEEE", location = "Taipei, Taiwan", url = "https://publications.utah.edu/publications/schulz11/Schulz_ICPP2011.pdf", } @TechReport{SCI:Sey2011a, author = "M. Seyedhosseini and A.R.C. Paiva and T. Tasdizen", title = "Multi-scale Series Contextual Model for Image Parsing", number = "UUSCI-2011-004", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-004.pdf", } @InProceedings{SCI:Sey2011b, author = "M. Seyedhosseini and A.R.C. Paiva and T. Tasdizen", title = "Fast {AdaBoost} training using weighted novelty selection", booktitle = "Proc. {IEEE} Intl. Joint Conf. on Neural Networks", pages = "1245--1250", year = "2011", address = "San Jose, CA, USA", month = "August", url = "https://publications.utah.edu/publications/seyedhosseini11/Seyedhosseini_NeuralNet2011.pdf", url = "https://publications.utah.edu/publications/seyedhosseini11/Seyedhosseini_NeuralNet2011-poster.pdf", } @InProceedings{SCI:Sey2011c, author = "M. Seyedhosseini and R. Kumar and E. Jurrus and R. Guily and M. Ellisman and H. Pfister and T. Tasdizen", title = "Detection of Neuron Membranes in Electron Microscopy Images using Multi-scale Context and Radon-like Features", booktitle = "Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011", volume = "6891", pages = "670--677", year = "2011", series = "Lecture Notes in Computer Science (LNCS)", url = "https://publications.utah.edu/publications/seyedhosseini11/Seyedhosseini_MICCAI2011.pdf", } @Article{SCI:Shi2011a, author = "F. Shi and D. Shen and P.-T. Yap and Y. Fan and J.-Z. Cheng and H. An and L.L. Wald and G. Gerig and J.H. Gilmore and W. Lin", title = "CENTS: Cortical Enhanced Neonatal Tissue Segmentation", journal = "Human Brain Mapping HBM", volume = "32", number = "3", pages = "382--396", year = "2011", month = "March", note = "ePub 5 Aug 2010", url = "https://publications.utah.edu/publications/shi2011/Shi_HBM2011a.pdf", } @Article{SCI:Ste2011a, author = "M. Steinberger and M. Waldner and M. Streit and A. Lex and D. Schmalstieg", title = "Context-Preserving Visual Links", journal = "IEEE Transactions on Visualization and Computer Graphics (InfoVis '11)", volume = "17", number = "12", year = "2011", url = "https://publications.utah.edu/publications/Ste2011a/2011_infovis_context-preserving-links.pdf", } @Article{SCI:Sum2011a, author = "B. Summa and G. Scorzelli and M. Jiang and P.-T. Bremer and V. Pascucci", title = "Interactive Editing of Massive Imagery Made Simple: Turning Atlanta into Atlantis", journal = "ACM Transactions on Graphics", volume = "30", number = "2", pages = "7:1--7:13", year = "2011", month = "April", url = "https://publications.utah.edu/publications/summa10/Summa_atlantis2010.pdf", } @Article{SCI:Swe2011a, author = "D.J. Swenson and S.E. Geneser and J.G. Stinstra and R.M. Kirby and R.S. MacLeod", title = "Cardiac Position Sensitivity Study in the Electrocardiographic Forward Problem Using Stochastic Collocation and Boundary Element Methods", journal = "Annals of Biomedical Engineering", volume = "39", number = "12", pages = "2900--2910", year = "2011", url = "https://publications.utah.edu/publications/swenson11/Swenson_ABE2011.pdf", } @Article{SCI:Sze2011a, author = "M. Szegedi and J. Hinkle and S. Joshi and V. Sarkar and P. Rassiah-Szegedi and B. Wang and B. Salter", title = "WE-E-BRC-05: Voxel Based Four Dimensional Tissue Deformation Reconstruction (4DTDR) Validation Using a Real Tissue Phantom", journal = "Medical Physics", volume = "38", pages = "3819", year = "2011", url = "https://publications.utah.edu/publications/szegedi11/Szegedi_MedPhys_WE-E-BRC-05.pdf", } @InProceedings{SCI:Tam2011a, author = "G. Tamm and A. Schiewe and J. Krüger", title = "{ZAPP} – A management framework for distributed visualization systems", booktitle = "Proceedings of {CGVCVIP} 2011 : {IADIS} International Conference on Computer Graphics, Visualization, Computer Vision And Image Processing", pages = "(accepted)", year = "2011", url = "https://publications.utah.edu/publications/Tam2011a/Tamm_CGVCVIP2011.pdf", } @InProceedings{SCI:Tat2011a, author = "J.D. Tate and J.G. Stinstra and T. Pilcher and A. Poursaid and E. Saarel and R.S. MacLeod", title = "Measuring Defibrillator Surface Potentials for Simulation Verification", booktitle = "Proceedings of the {IEEE} Engineering in Medicine and Biology Society {EMBS} 33rd Annual International Conference", pages = "239 - 242", year = "2011", issn = "1557-170X", keywords = "Electric potential, Electric shock, Electrodes;Estimation, Lead;Surface reconstruction, Torso, Algorithms, Body Surface Potential Mapping, Computer Simulation, Defibrillators, Implantable, Humans, Models, Cardiovascular, Therapy, Computer-Assisted", url = "https://publications.utah.edu/publications/tate11/Tate_EMBS2011.pdf", } @InProceedings{SCI:Tat2011g, author = "J.D. Tate and J.G. Stinstra and T.A. Pilcher and R.S. MacLeod", title = "Measurement of Defibrillator Surface Potentials for Simulation Verification", booktitle = "2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society", journal = "Computing in Cardiology", pages = "853--856", year = "2011", publisher = "IEEE", month = "Aug", url = "https://publications.utah.edu/publications/Tat2011g/Tate_CinC2010.pdf", } @InProceedings{SCI:Tho2011a, author = "D. Thompson and J.A. Levine and J.C. Bennett and P.-T. Bremer and A. Gyulassy and V. Pascucci and P.P. Pebay", title = "Analysis of Large-Scale Scalar Data Using Hixels", booktitle = "Proceedings of the 2011 {IEEE} Symposium on Large-Scale Data Analysis and Visualization ({LDAV})", pages = "23--30", year = "2011", location = "Providence, RI", keywords = "Petascale Visualization, Scalar Field Data, Topology- Based Techniques, Ensemble Visualization", url = "https://publications.utah.edu/publications/thompson11/Thompson_LDAV2011.pdf", } @Article{SCI:Tra2011a, author = "L.T. Tran and M. Berzins", title = "IMPICE Method for Compressible Flow Problems in Uintah", journal = "International Journal For Numerical Methods In Fluids", year = "2011", note = "Published online 20 July", url = "https://publications.utah.edu/publications/tran11/IMPICERevision.pdf", } @TechReport{SCI:Tra2011b, author = "L.T. Tran and M. Berzins", title = "Defect Sampling in Global Error Estimation for ODEs and Method-Of-Lines {PDEs} Using Adjoint Methods", number = "UUSCI-2011-006", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "CSAFE", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-006.pdf", } @Article{SCI:Tri2011a, author = "X. Tricoche and C. Garth and A. Sanderson", title = "Visualization of topological structures in area-preserving maps", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "17", number = "12", pages = "1765--1774", year = "2011", month = "Dec", url = "https://publications.utah.edu/publications/Tri2011a/Tricoche_TVCG2011.pdf", } @Article{SCI:Tsu2011a, author = "P. Tsuji and D. Xiu and L. Ying", title = "A Fast Method for High-frequency Acoustic Scattering from Random Scatterers", journal = "International Journal for Uncertainty Quantification", volume = "1", number = "2", pages = "99--117", year = "2011", keywords = "acoustic scattering, random domains, uncertainty quantification, boundary integral equations, fast algorithms, quasi-Monte Carlo methods", url = "https://publications.utah.edu/publications/tsuji11/Tsuji_IJUQ2011.pdf", } @Article{SCI:Tus2011a, author = "N.J. Tustison and S.P. Awate and G. Song and T.S. Cook and J.C. Gee", title = "Point Set Registration Using Havrda–Charvat–Tsallis Entropy Measures", journal = "IEEE Transactions on Medical Imaging", volume = "30", number = "2", pages = "451--460", year = "2011", url = "https://publications.utah.edu/publications/tustison11/Tustison_TMI2011.pdf", } @Article{SCI:Ver2011a, author = "G.R. Vergara and S. Vijayakumar and E.G. Kholmovski and J.J. Blauer and M.A. Guttman and C. Gloschat and G. Payne and K. Vij and N.W. Akoum and M. Daccarett and C.J. McGann and R.S. Macleod and N.F. Marrouche", title = "Real-time magnetic resonance imaging-guided radiofrequency atrial ablation and visualization of lesion formation at 3 Tesla", journal = "Heart Rhythm", volume = "8", number = "2", pages = "295--303", year = "2011", keywords = "cibc, ablation, mri", url = "https://publications.utah.edu/publications/vergara11/Vergara_HeartRhythm2011.pdf", } @TechReport{SCI:Vo2011a, author = "H.T. Vo and J. Bronson and B. Summa and J.L.D. Comba and J. Freire and B. Howe and V. Pascucci and C.T. Silva", title = "Parallel Visualization on Large Clusters using MapReduce", number = "UUSCI-2011-002", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/vo11/UUSCI-2011-002.pdf", } @InProceedings{SCI:Vo2011b, author = "H.T. Vo and J. Bronson and B. Summa and J.L.D. Comba and J. Freire and B. Howe and V. Pascucci and C.T. Silva", title = "Parallel Visualization on Large Clusters using MapReduce", booktitle = "Proceedings of the 2011 {IEEE} Symposium on Large-Scale Data Analysis and Visualization ({LDAV})", pages = "81--88", year = "2011", keywords = "MapReduce, Hadoop, cloud computing, large meshes, volume rendering, gigapixels", url = "https://publications.utah.edu/publications/vo11/Vo_LDAV2011.pdf", } @Article{SCI:Vo2011c, author = "H.T. Vo and C.T. Silva and L.F. Scheidegger and V. Pascucci", title = "Simple and Efficient Mesh Layout with Space-Filling Curves", journal = "Journal of Graphics, GPU, and Game Tools", pages = "25--39", year = "2011", issn = "2151-237X", url = "https://publications.utah.edu/publications/Vo2011c/Vo_JGT2011.pdf", } @Article{SCI:Wan2011a, author = "Y. Wang and A. Gupta and Z. Liu and H. Zhang and M.L. Escolar and J.H. Gilmore and S. Gouttard and P. Fillard and E. Maltbie and G. Gerig and M. Styner", title = "DTI registration in atlas based fiber analysis of infantile Krabbe disease", journal = "Neuroimage", pages = "(in print)", year = "2011", url = "https://publications.utah.edu/publications/wang11/Wang_NeuroImage2011.pdf", } @Article{SCI:Wan2011b, author = "D. Wang and R.M. Kirby and C.R. Johnson", title = "Finite Element Based Discretization and Regularization Strategies for 3D Inverse Electrocardiography", journal = "IEEE Transactions for Biomedical Engineering", volume = "58", number = "6", pages = "1827--1838", year = "2011", url = "https://publications.utah.edu/publications/wang11/Wang_TBME2011.pdf", } @TechReport{SCI:Wan2011c, author = "Bei Wang and B. Summa and V. Pascucci and M. Vejdemo-Johansson", title = "Branching and Circular Features in High Dimensional Data", number = "UUSCI-2011-005", year = "2011", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2011-005.pdf", } @Article{SCI:Wan2011d, author = "Bei Wang and B. Summa and V. Pascucci and M. Vejdemo-Johansson", title = "Branching and Circular Features in High Dimensional Data", journal = "IEEE Transactions of Visualization and Computer Graphics (TVCG)", volume = "17", number = "12", pages = "1902--1911", year = "2011", keywords = "Dimensionality reduction, circular coordinates, visualization, topological analysis", url = "https://publications.utah.edu/publications/Wan2011d/Wang_TVCG2011.pdf", } @InProceedings{SCI:Wan2011e, author = "D. Wang and R.M. Kirby and R.S. Macleod and C.R. Johnson", title = "An optimization framework for inversely estimating myocardial transmembrane potentials and localizing ischemia", booktitle = "Proceedings of the International Conference of the {IEEE} Engineering in Medicine and Biology Society ({EMBS})", pages = "1680--1683", year = "2011", url = "https://publications.utah.edu/publications/wang11/Wang_EMBS2011.pdf", } @Article{SCI:Wil2011a, author = "S. Williams and M. Petersen and P.-T. Bremer and M. Hecht and V. Pascucci and J. Ahrens and M. Hlawitschka and B. Hamann", title = "Adaptive Extraction and Quantification of Geophysical Vortices", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2011 {IEEE} Visualization Conference", volume = "17", number = "12", pages = "2088--2095", year = "2011", url = "https://publications.utah.edu/publications/williams11/Williams_VIS2011.pdf", } @Article{SCI:Yan2011a, author = "C. Yang and D. Xiu and R.M. Kirby", title = "Visualization of Covariance and Cross-covariance Field", journal = "International Journal for Uncertainty Quantification", volume = "3", number = "1", pages = "25--38", year = "2011", keywords = "netl", url = "https://publications.utah.edu/publications/yang11/Yang_IJUQ2011.pdf", } @Article{SCI:Zhu2011a, author = "H. Zhu and L. Kong and R. Li and M.S. Styner and G. Gerig and W. Lin and J.H. Gilmore", title = "FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics", journal = "NeuroImage", volume = "56", number = "3", pages = "1412--1425", year = "2011", url = "https://publications.utah.edu/publications/zhu2011/Zhu_NeuroImage2011.pdf", } @Article{SCI:Adl2010a, author = "G. Adluru and T. Tasdizen and M.C. Schabel and E.V.R. DiBella", title = "Reconstruction of 3D Dynamic Contrast-Enhanced Magnetic Resonance Imaging Using Nonlocal Means", journal = "Journal of Magnetic Resonance Imaging", volume = "32", pages = "1217--1227", year = "2010", url = "https://publications.utah.edu/publications/adluru10/Adluru_JMRI_10.pdf", } @InProceedings{SCI:Adl2010b, author = "G. Adluru and T. Tasdizen and R. Whitaker and E. DiBella", title = "Improving Undersampled MRI Reconstruction Using Non-Local Means", booktitle = "Proceedings of the 2010 International Conference on Pattern Recognition", pages = "4000--4003", year = "2010", url = "https://publications.utah.edu/publications/adluru10/Adluru_ICPR_10.PDF", } @Article{SCI:And2010a, author = "A.E. Anderson and B.J. Ellis and S.A. Maas and J.A. Weiss", title = "Effects of idealized joint geometry on finite element predictions of cartilage contact stresses in the hip", journal = "Journal of Biomechanics", volume = "43", number = "7", pages = "1351--1357", year = "2010", month = "May", keywords = "mrl", url = "https://publications.utah.edu/publications/And2010a/anderson_jbiomech_2010.pdf", } @Article{SCI:And2010b, author = "E.W. Anderson and G.A. Preston and C.T. Silva", title = "Using Python for Signal Processing and Visualization", journal = "IEEE Computing in Science and Engineering", volume = "12", number = "4", pages = "90--95", year = "2010", url = "https://publications.utah.edu/publications/anderson10/Anderson_python_processing2010.pdf", } @Article{SCI:And2010c, author = "J.R. Anderson and B.C. Grimm and S. Mohammed and B.W. Jones and T. Tasdizen and J. Spaltenstein and P. Koshevoy and R.T. Whitaker and R.E. Marc", title = "The Viking Viewer: Scalable Multiuser Annotation and Summarization of Large Volume Datasets", journal = "Journal of Microscopy", volume = "241", number = "1", pages = "13--28", year = "2010", url = "https://publications.utah.edu/publications/anderson10/Anderson_JMicro2010.pdf", } @Article{SCI:Ate2010a, author = "G.A. Ateshian and S.A. Maas and J.A. Weiss", title = "Finite element algorithm for frictionless contact of porous permeable media under finite deformation and sliding", journal = "Journal of Biomechanical Engineering", volume = "132", number = "6", year = "2010", note = "Cover article", keywords = "mrl", url = "https://publications.utah.edu/publications/ateshian10/ateshian_jbme_2010.pdf", } @Article{SCI:Awa2010a, author = "S.P. Awate and P.A. Yushkevich and Z. Song and D.J. Licht and J.C. Gee", title = "Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development", journal = "NeuroImage", volume = "53", number = "2", pages = "450--459", year = "2010", url = "https://publications.utah.edu/publications/awate10/Awate_NeuroImage2010.pdf", } @Article{SCI:Bad2010a, author = "T.J. Badger and M. Daccarett and N.W. Akoum and Y.A. Adjei-Poku and N.S. Burgon and T.S. Haslam and S. Kalvaitis and S. Kuppahally and G. Vergara and L. McMullen and P.A. Anderson and E. Kholmovski and R.S. Macleod and N.F. Marrouche", title = "Evaluation of left atrial lesions after initial and repeat atrial fibrillation ablation: lessons learned from delayed-enhancement MRI in repeat ablation procedures", journal = "Circulation. Arrhythmia and Electrophysiology", volume = "3", number = "3", pages = "249--259", year = "2010", keywords = "cibc", url = "https://publications.utah.edu/publications/badger10/Badger_CircArrhythmElectrophysiol2010.pdf", } @Article{SCI:Ber2010a, author = "M. Berger and L.G. Nonato and V. Pascucci and C.T. Silva", title = "Fiedler Trees for Multiscale Surface Analysis", journal = "Computer & Graphics", volume = "34", number = "3", pages = "272--281", year = "2010", month = "June", note = "Special Issue of Sha", url = "https://publications.utah.edu/publications/Ber2010a/Berger_htpaper2010.pdf", } @InProceedings{SCI:Ber2010b, author = "M. Berzins and J. Luitjens and Q. Meng and T. Harman and C.A. Wight and J.R. Peterson", title = "Uintah: A Scalable Framework for Hazard Analysis", booktitle = "Proceedings of the Teragrid 2010 Conference, TG 10", pages = "(published online)", year = "2010", month = "July", note = "Awarded Best Paper in the Science Track!", isbn = "978-1-60558-818-6", keywords = "Uintah, csafe", url = "https://publications.utah.edu/publications/Ber2010b/Tgrid10PAPPSv4.pdf", } @Article{SCI:Ber2010c, author = "M. Berzins", title = "Nonlinear Data-Bounded Polynomial Approximations and their Applications in ENO Methods", journal = "Numerical Algorithms", volume = "55", number = "2", pages = "171", year = "2010", keywords = "Data bounded polynomials, Essentially non-oscillatory methods", url = "https://publications.utah.edu/publications/berzins10/Berzins_NA1020a.pdf", } @InCollection{SCI:Bla2010a, author = "J.J.E. Blauer and J. Cates and C.J. McGann and E.G. Kholmovski and A. Alexander and M.W. Prastawa and S. Joshi and N.F. Marrouche and R.S. MacLeod", title = "MRI Based Injury Characterization Immediately Following Ablation of Atrial Fibrillation", booktitle = "Computing in Cardiology", volume = "37", pages = "165--168", year = "2010", issn = "0276−6574", url = "https://publications.utah.edu/publications/Bla2010a/Blauer_CinC2010.pdf", } @InProceedings{SCI:Bro2010a, author = "C. Brownlee and V. Pegoraro and S. Shankar and P. McCormick and C.D. Hansen", title = "Physically-Based Interactive Schlieren Flow Visualization", booktitle = "Proceedings of {IEEE} Pacific Visualization 2010", year = "2010", note = "Won Best Paper Award!", url = "https://publications.utah.edu/publications/brownlee10/Brownlee_PacVis2010.pdf", } @InCollection{SCI:Bro2010c, author = "J.R. Bronson and J.A. Levine and R.T. Whitaker", title = "Particle Systems for Adaptive, Isotropic Meshing of {CAD} Models", booktitle = "Proceedings of the 19th International Meshing Roundtable", pages = "279-296", year = "2010", publisher = "Springer", note = "Awarded Best Paper", url = "https://publications.utah.edu/publications/Bro2010c/Bronson_IMR2010.pdf", } @Article{SCI:Cha2010a, author = "A. Chaturvedi and C.R. Butson and S.F. Lempka and S.E. Cooper and C.C. McIntyre", title = "Patient-specific models of deep brain stimulation: influence of field model complexity on neural activation predictions", journal = "Brain Stimulation", volume = "3", number = "2", pages = "65--67", year = "2010", publisher = "Elsevier Inc.", month = "April", issn = "1935-861X", keywords = "Action Potentials, Action Potentials: physiology, Computer Simulation, Deep Brain Stimulation, Deep Brain Stimulation: instrumentation, Deep Brain Stimulation: methods, Humans, Male, Middle Aged, Models, Neurological, Parkinson Disease, Parkinson Disease: therapy, Subthalamic Nucleus, Subthalamic Nucleus: physiology", url = "https://publications.utah.edu/publications/Cha2010a/Chaturvedi_BrainStim2010.pdf", } @Article{SCI:Cho2010a, author = "A.N.M. Imroz Choudhury and M.D. Steffen and J.E. Guilkey and S.G. Parker", title = "Enhanced Understanding of Particle Simulations Through Deformation-Based Visualization", journal = "Computer Modeling in Engineering & Sciences", volume = "63", number = "2", pages = "117--136", year = "2010", keywords = "csafe", url = "https://publications.utah.edu/publications/Cho2010a/Choudhury_particle-deformation.CMES2010.pdf", } @Article{SCI:Cui2010a, author = "J. Cui and P. Rosen and V. Popescu and C. Hoffmann", title = "A Curved Ray Camera for Handling Occlusions through Continuous Multiperspective Visualization", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Visualization 2010)", pages = "1235--1242", year = "2010", month = "November/December", url = "https://publications.utah.edu/publications/cui10/Cui_Vis2010.pdf", } @Article{SCI:Dam2010a, author = "E.B. Dam and P.T. Fletcher and S.M. Pizer", title = "Automatic shape model building based on principal geodesic analysis bootstrapping", journal = "Medical Image Analysis", volume = "12", number = "2", pages = "136--151", year = "2010", note = "Epub Feb 2 2010", url = "https://publications.utah.edu/publications/dam10/Dam_MIA2010.pdf", } @Article{SCI:Dan2010a, author = "J. Daniels and E.W. Anderson and L.G. Nonato and C.T. Silva", title = "Interactive Vector Field Feature Identification", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2010 {IEEE} Visualization Conference", volume = "16", number = "6", pages = "1560--1568", year = "2010", url = "https://publications.utah.edu/publications/daniels10/Daniels_Vis2010.pdf", } @Article{SCI:Dav2010a, author = "B.C. Davis and P.T. Fletcher and E. Bullitt and S. Joshi", title = "Population Shape Regression from Random Design Data", journal = "International Journal of Computer Vision", volume = "90", number = "1", pages = "255--266", year = "2010", month = "October", note = "Marr Prize Special Issue", url = "https://publications.utah.edu/publications/davis10/Davis_Manifold_Kernel_Regression_IJCV2010.pdf", } @Article{SCI:Dru2010a, author = "N.J. Drury and B.J. Ellis and J.A. Weiss and P.J. McMahon and R.E. Debski", title = "The impact of glenoid labrum thickness and modulus on labrum and glenohumeral capsule function", journal = "Journal of Biomechanical Engineering", volume = "132", number = "12", pages = "121003--121010", year = "2010", note = "Awarded 2010 Skalak Best Paper!", url = "https://publications.utah.edu/publications/drury10/drury_jbme_2010.pdf", } @InProceedings{SCI:Dur2010a, author = "S. Durrleman and X. Pennec and A. Trouvé and N. Ayache and J. Braga", title = "Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration", booktitle = "Proceedings of the MICCAI Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data", pages = "(in press)", year = "2010", month = "September", location = "Beijing, China", url = "https://publications.utah.edu/publications/durrleman10/Durrleman_STIA10.pdf", } @Article{SCI:Dur2010b, author = "S. Durrleman and P. Fillard and X. Pennec and A. Trouvé and N. Ayache", title = "Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents", journal = "NeuroImage", volume = "55", number = "3", pages = "1073--1090", year = "2010", url = "https://publications.utah.edu/publications/durrleman10/Durrleman_NImg10.pdf", } @Article{SCI:Els2010a, author = "M. El-Sayed and R.G. Steen and M.D. Poe and T.C. Bethea and G. Gerig and J. Lieberman and L. Sikich", title = "Deficits in gray matter volume in psychotic youth with schizophrenia-spectrum disorders are not evident in psychotic youth with mood disorders", journal = "J Psychiatry Neurosci", year = "2010", month = "July", } @Article{SCI:Els2010b, author = "M. El-Sayed and R.G. Steen and M.D. Poe and T.C. Bethea and G. Gerig and J. Lieberman and L. Sikich", title = "Brain volumes in psychotic youth with schizophrenia and mood disorders", journal = "Journal of Psychiatry and Neuroscience", volume = "35", number = "4", pages = "229--236", year = "2010", month = "July", url = "https://publications.utah.edu/publications/elsayed10/El-Sayed_JPN2010b.pdf", } @TechReport{SCI:Eti2010a, author = "T. Etiene and L.G. Nonato and C.E. Scheidegger and J. Tierny and T.J. Peters and V. Pascucci and R.M. Kirby and C.T. Silva", title = "Topology Verification for Isosurface Extraction", number = "UUSCI-2010-003", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-003.pdf", } @Article{SCI:Fle2010a, author = "P.T. Fletcher and R.T. Whitaker and R. Tao and M.B. DuBray and A. Froehlich and C. Ravichandran and A.L. Alexander and E.D. Bigler and N. Lange and J.E. Lainhart", title = "Microstructural connectivity of the arcuate fasciculus in adolescents with high-functioning autism", journal = "NeuroImage", volume = "51", number = "3", pages = "1117--1125", year = "2010", month = "July", note = "Epub Feb 2 2010", url = "https://publications.utah.edu/publications/fletcher10/Fletcher_Neuroimage2010.pdf", } @InProceedings{SCI:Fog2010a, author = "T. Fogal and J. Krüger", title = "Tuvok, an Architecture for Large Scale Volume Rendering", booktitle = "Proceedings of the 15th International Workshop on Vision, Modeling, and Visualization", pages = "139--146", year = "2010", month = "November", url = "https://publications.utah.edu/publications/Fog2010a/Fogal_Tuvok2010.pdf", } @InProceedings{SCI:Fog2010b, author = "T. Fogal and H. Childs and S. Shankar and J. Krüger and R.D. Bergeron and P. Hatcher", title = "Large Data Visualization on Distributed Memory Multi-GPU Clusters", booktitle = "Proceedings of High Performance Graphics 2010", pages = "57--66", year = "2010", url = "https://publications.utah.edu/publications/Fog2010b/Fogal_MultiGPU2010.pdf", } @Article{SCI:Gen2010a, author = "S.E. Geneser and J.D. Hinkle and R.M. Kirby and Brian Wang and B. Salter and S. Joshi", title = "Quantifying Variability in Radiation Dose Due to Respiratory-Induced Tumor Motion", journal = "Medical Image Analysis", volume = "15", number = "4", pages = "640--649", year = "2010", url = "https://publications.utah.edu/publications/geneser10/MEDIA-D-09-00276_abstract.pdf", } @Article{SCI:Ger2010a, author = "S. Gerber and T. Tasdizen and P.T. Fletcher and S. Joshi and R.T. Whitaker and the Alzheimers Disease Neuroimaging Initiative (ADNI)", title = "Manifold modeling for brain population analysis", journal = "Medical Image Analysis", volume = "14", number = "5", pages = "643--653", year = "2010", series = "Special Issue on the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2009", note = "Awarded MICCAI 2010, Best of the Journal Issue Award", issn = "1361-8415", keywords = "Neurological image analysis; Population analysis; Brain MRI; Manifold learning; Computer aided clinical diagnosis", url = "https://publications.utah.edu/publications/gerber10/Gerber_MICCAI2010.pdf", } @Article{SCI:Ger2010b, author = "S. Gerber and P.-T. Bremer and V. Pascucci and R.T. Whitaker", title = "Visual Exploration of High Dimensional Scalar Functions", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "16", number = "6", pages = "1271--1280", year = "2010", series = "IEEE Transactions on Visualization and Computer Graphics", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/Ger2010b/Gerber_hdviz2010.pdf", } @Article{SCI:Gil2010a, author = "J.H. Gilmore and C. Kang and D.D. Evans and H.M. Wolfe and M.D. Smith and J.A. Lieberman and W. Lin and R.M. Hamer and M. Styner and G. Gerig", title = "Prenatal and Neonatal Brain Structure and White Matter Maturation in Children at High Risk for Schizophrenia", journal = "American Journal of Psychiatry", volume = "167", number = "9", pages = "1083--1091", year = "2010", month = "September", note = "Epub 2010 Jun 1", url = "https://publications.utah.edu/publications/gilmore10/Gilmore_AJP2010.pdf", } @Article{SCI:Gil2010b, author = "J.H. Gilmore and J.E. Schmitt and R.C. Knickmeyer and J.K. Smith and W. Lin and M. Styner and G. Gerig and M.C. Neale", title = "Genetic and environmental contributions to neonatal brain structure: A twin study", journal = "Human Brain Mapping", volume = "31", number = "8", pages = "1174--1182", year = "2010", note = "ePub 8 Jan 2010", url = "https://publications.utah.edu/publications/gilmore10/Gilmore_HBM2010.pdf", } @Article{SCI:Gor2010a, author = "K. Gorczowski and M. Styner and J.Y. Jeong and J.S. Marron and J. Piven and H.C. Hazlett and S.M. Pizer and G. Gerig", title = "Multi-object analysis of volume, pose, and shape using statistical discrimination", journal = "IEEE Trans Pattern Anal Mach Intell.", volume = "32", number = "4", pages = "652--661", year = "2010", month = "April", url = "https://publications.utah.edu/publications/gorczowski10/Gorczowski_PAMI2010.pdf", } @Article{SCI:Gra2010a, author = "M. Grabherr and P. Russell and M.D. Meyer and E. Mauceli and J. Alföldi and F. Di Palma and K. Lindblad-Toh", title = "Genome-wide synteny through highly sensitive sequence alignment: Satsuma", journal = "Bioinformatics", volume = "26", number = "9", pages = "1145--1151", year = "2010", url = "https://publications.utah.edu/publications/grabherr10/Grabherr_Satsuma2010.pdf", } @Article{SCI:Guo2010a, author = "X. Guo and J. Li and D. Xiu and A. Alexeenko", title = "Uncertainty Quantification Models for Microscale Squeeze-Film Damping", journal = "International Journal for Numerical Methods in Engineering", volume = "84", number = "10", pages = "1257--1272", year = "2010", keywords = "uncertainty quantification, squeeze-film damping, gPC expansion, rarefied flow", url = "https://publications.utah.edu/publications/guo10/Guo_IJNME2010.pdf", } @Article{SCI:Ha2010a, author = "L. Ha and M.W. Prastawa and G. Gerig and J.H. Gilmore and C.T. Silva and S. Joshi", title = "Image Registration Driven by Combined Probabilistic and Geometric Descriptors", journal = "Med Image Comput Comput Assist Interv.", volume = "13", number = "2", pages = "602--609", year = "2010", url = "https://publications.utah.edu/publications/ha10/Ha_ImageReg2010.pdf", } @InProceedings{SCI:Ha2010b, author = "L.K. Ha and J. Krüger and S. Joshi and C.T. Silva", title = "Multi-scale Unbiased Diffeomorphic Atlas Construction on Multi-GPUs", booktitle = "GPU Computing Gems", volume = "1", year = "2010", url = "https://publications.utah.edu/publications/Ha2010b/Ha_MultiDiff_GPUGems2010.pdf", } @InProceedings{SCI:Ha2010c, author = "L.K. Ha and M.W. Prastawa and G. Gerig and J.H. Gilmore and C.T. Silva and S. Joshi", title = "Image Registration Driven by Combined Probabilistic and Geometric Descriptors", booktitle = "Proceedings of Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010", volume = "6362/2010", pages = "602--609", year = "2010", series = "Lecture Notes in Computer Science (LNCS)", keywords = "netl", url = "https://publications.utah.edu/publications/ha10/Ha_LNCS2010.pdf", } @Article{SCI:Hen2010a, author = "H.B. Henninger and C.J. Underwood and G.A. Ateshian and J.A. Weiss", title = "Effect of sulfated glycosaminoglycan digestion on the transverse permeability of medial collateral ligament.", journal = "Journal of Biomechanics", volume = "43", pages = "2567--2573", year = "2010", url = "https://publications.utah.edu/publications/henninger10/henninger_j_biomech_2010.pdf", } @InProceedings{SCI:Hij2010a, author = "Y. Hijazi and A. Knoll and M. Schott and A. Kensler and C.D. Hansen and H. Hagen", title = "CSG Operations of Arbitary Primitives with Interval Arithmetic and Real-Time Ray Casting", booktitle = "Scientific Visualization: Advanced Concepts", journal = "DROPS - Dagstuhl Research Online Publication Server", pages = "78-89", year = "2010", editor = "Hans Hagen", publisher = "Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik", keywords = "Implicit Surface, Constructive Solid Geometry, Interval Arithmetic, Ray Casting, Data processing Computer science", url = "https://publications.utah.edu/publications/Hij2010a/Hijazi_CSG-Operations2010.pdf", } @Article{SCI:Isa2010a, author = "B.M. Isaacson and J.G. Stinstra and R.S. MacLeod and P.F. Pasquina and R.D. Bloebaum", title = "Developing a Quantitative Measurement System for Assessing Heterotopic Ossification and Monitoring the Bioelectric Metrics from Electrically Induced Osseointegration in the Residual Limb of Service Members", journal = "Annals of Biomedical Engineering", volume = "38", number = "9", pages = "2968-–2978", year = "2010", keywords = "cibc", url = "https://publications.utah.edu/publications/isaacson10/Isaacson_ABE2010a.pdf", } @InProceedings{SCI:Iye2010b, author = "S.K. Iyer and E. DiBella and T. Tasdizen", title = "Edge enhanced spatio-temporal constrained reconstruction of undersampled dynamic contrast enhanced radial {MRI}", booktitle = "{IEEE} International Symposium on Biomedical Imaging ({ISBI}): From Nano to Macro", pages = "704--707", year = "2010", url = "https://publications.utah.edu/publications/iyer10/Iyer_ISBI2010.pdf", } @TechReport{SCI:Jad2010a, author = "S. Jadhav and H. Bhatia and P.-T. Bremer and J.A. Levine and L.G. Nonato and V. Pascucci", title = "Consistent Approximation of Local Flow Behavior for 2D Vector Fields using Edge Maps", number = "UUSCI-2010-004", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-004.pdf", } @Article{SCI:Jak2010a, author = "J. Jakeman and M. Eldred and D. Xiu", title = "Numerical Approach for Quantification of Epistemic Uncertainty", journal = "Journal of Computational Physics", volume = "229", number = "12", pages = "4648--4663", year = "2010", keywords = "Uncertainty quantification, Epistemic uncertainty, Generalized polynomial chaos, Stochastic collocation, Encapsulation problem", url = "https://publications.utah.edu/publications/jakeman10/Jakeman_JCP2010.pdf", } @InProceedings{SCI:Jia2010a, author = "F. Jiao and J.M. Phillips and J.G. Stinstra and J. Kueger and R. Varma and E. Hsu and J. Korenberg and C.R. Johnson", title = "Metrics for Uncertainty Analysis and Visualization of Diffusion Tensor Images", booktitle = "Proceedings of the 5th international conference on Medical imaging and augmented reality (MIAR)", pages = "179--190", year = "2010", publisher = "Springer-Verlag", address = "Berlin, Heidelberg", month = "September", location = "Beijing, China", url = "https://publications.utah.edu/publications/jiao10/Jiao_fiber-uncertainty.pdf", } @Article{SCI:Jim2010a, author = "P.K. Jimack and R.M. Kirby", title = "Towards the Development on an h-p-Refinement Strategy Based Upon Error Estimate Sensitivity", journal = "Computers and Fluids", volume = "46", number = "1", pages = "277--281", year = "2010", url = "https://publications.utah.edu/publications/jimack10/ICFDpaperJimackKirbyRevised_abstract.pdf", } @Article{SCI:Jol2010a, author = "M. Jolley and J. Stinstra and J. Tate and S. Pieper and R.S. Macleod and L. Chu and P. Wang and J.K. Triedman", title = "Finite element modeling of subcutaneous implantable defibrillator electrodes in an adult torso", journal = "Heart Rhythm", volume = "7", number = "5", pages = "692--698", year = "2010", month = "May", url = "https://publications.utah.edu/publications/Jol2010a/Jolley_HeartRhythm2010.pdf", } @Article{SCI:Jur2010a, author = "E. Jurrus and A.R.C. Paiva and S. Watanabe and J.R. Anderson and B.W. Jones and R.T. Whitaker and E.M. Jorgensen and R.E. Marc and T. Tasdizen", title = "Detection of Neuron Membranes in Electron Microscopy Images Using a Serial Neural Network Architecture", title_url = "http://www.sciencedirect.com/science/article/B6W6Y-50BB5M8-1/2/9991cfd9d938393ae5775578a69c03e6", journal = "Medical Image Analysis", volume = "14", number = "6", pages = "770--783", year = "2010", url = "https://publications.utah.edu/publications/jurrus10/Jurrus_MIA2010.pdf", } @InProceedings{SCI:Kru2010a, author = "J. Krüger", title = "A New Sampling Scheme for Slice Based Volume RenderingA new sampling scheme for slice based volume rendering", booktitle = "Proceedings of {IEEE/EG} International Symposium on Volume Graphics (2010)", pages = "1--4", year = "2010", url = "https://publications.utah.edu/publications/Kru2010a/Krueger_vg2010.pdf", } @InProceedings{SCI:Kum2010a, author = "S. Kumar and V. Vishwanath and P. Carns and V. Pascucci and R. Latham and T. Peterka and M. Papka and R. Ross", title = "Towards Efficient Access of Multi-dimensional, Multi-resolution Scientific Data", booktitle = "Proceedings of the 5th Petascale Data Storage Workshop, Supercomputing 2010", pages = "(in press)", year = "2010", url = "https://publications.utah.edu/publications/kumar10/pdsw10-paper21.pdf", } @Article{SCI:Kup2010a, author = "S.S. Kuppahally and N. Akoum and N.S. Burgon and T.J. Badger and E.G. Kholmovski and S. Vijayakumar and S.N. Rao and J. Blauer and E.N. Fish and E.V. Dibella and R.S. Macleod and C. McGann and S.E. Litwin and N.F. Marrouche", title = "Left atrial strain and strain rate in patients with paroxysmal and persistent atrial fibrillation: relationship to left atrial structural remodeling detected by delayed-enhancement MRI", journal = "Circ Cardiovasc Imaging", volume = "3", number = "3", pages = "231--239", year = "2010", keywords = "cvrti", url = "https://publications.utah.edu/publications/kuppahally10/Kuppahally_CircCardImaging2010.pdf", } @Article{SCI:Kup2010b, author = "S.S. Kuppahally and N. Akoum and T.J. Badger and N.S. Burgon and T. Haslam and E. Kholmovski and R.S. Macleod and C. McGann and N.F. Marrouche", title = "Echocardiographic left atrial reverse remodeling after catheter ablation of atrial fibrillation is predicted by preablation delayed enhancement of left atrium by magnetic resonance imaging", journal = "American Heart Journal", volume = "160", number = "5", pages = "877--884", year = "2010", url = "https://publications.utah.edu/publications/Kup2010b/Kuppahally_AHJ2010.pdf", } @Article{SCI:Lan2010a, author = "N. Lange and M.B. Dubray and J.E. Lee and M.P. Froimowitz and A. Froehlich and N. Adluru and B. Wright and C. Ravichandran and P.T. Fletcher and E.D. Bigler and A.L. Alexander and J.E. Lainhart", title = "Atypical diffusion tensor hemispheric asymmetry in autism", journal = "Autism Research", volume = "3", number = "6", pages = "350--358", year = "2010", url = "https://publications.utah.edu/publications/lange10/Lange_AutismRes2010a.pdf", } @Article{SCI:Lev2010a, author = "J.A. Levine and D.J. Swenson and Z. Fu and R.S. MacLeod and R.T. Whitaker", title = "A Comparison of Delaunay Based Meshing Algorithms for Electrophysiological Cardiac Simulations", journal = "Virtual Physiological Human", pages = "181--183", year = "2010", url = "https://publications.utah.edu/publications/levine10/Levine_VPH2010.pdf", } @InProceedings{SCI:Lex2010a, author = "A. Lex and M. Streit and E. Kruijff and D. Schmalstieg", title = "Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context", booktitle = "Proceeding of the IEEE Symposium on Pacific Visualization (PacificVis '10)", pages = "57--64", year = "2010", isbn = "424466856", url = "https://publications.utah.edu/publications/Lex2010a/05429609.pdf", } @Article{SCI:Lex2010b, author = "A. Lex and M. Streit and C. Partl and K. Kashofer and D. Schmalstieg", title = "Comparative Analysis of Multidimensional, Quantitative Data", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "16", number = "6", pages = "1027--1035", year = "2010", url = "https://publications.utah.edu/publications/Lex2010b/2010_infovis_matchmaker.pdf", } @Article{SCI:Li2010b, author = "J. Li and D. Xiu", title = "Evaluation of Failure Probability via Surrogate Models", journal = "Journal of Computational Physics", volume = "229", number = "23", pages = "8966--8980", year = "2010", keywords = "Failure probability, Sampling, Polynomial chaos, Stochastic computation", url = "https://publications.utah.edu/publications/li10/Li_JCP2010.pdf", } @Article{SCI:Liu2010a, author = "W. Liu and P. Zhu and J.S. Anderson and D. Yurgelun-Todd and P.T. Fletcher", title = "Spatial Regularization of Functional Connectivity Using High-Dimensional Markov Random Fields", journal = "Medical Image Computing and Computer-Assisted Intervention (MICCAI 2010)", volume = "14", pages = "363--370", year = "2010", url = "https://publications.utah.edu/publications/liu10/MRF_connectivity_miccai2010.pdf", } @Article{SCI:Liu2010b, author = "Z. Liu and C. Goodlett and G. Gerig and M. Styner", title = "Evaluation of DTI Property Maps as Basis of DTI Atlas Building", journal = "SPIE Medical Imaging", volume = "7623, 762325", year = "2010", month = "February", } @Article{SCI:Liu2010c, author = "Z. Liu and Y. Wang and G. Gerig and S. Gouttard and R. Tao and T. Fletcher and M.A. Styner", title = "Quality control of diffusion weighted images", journal = "SPIE Medical Imaging", volume = "7628, 76280J", year = "2010", month = "February", } @InProceedings{SCI:Liv2010a, author = "Y. Livnat and P. Gesteland and J. Benuzillo and W. Pettey and D. Bolton and F. Drews and H. Kramer and M. Samare", title = "A Novel Workbench for Epidemic investigation and Analysis of Search Strategies in public health practice", booktitle = "Proceedings of AMIA 2010 Annual Symposium", pages = "647--651", year = "2010", url = "https://publications.utah.edu/publications/livnat10/Epinome_AMIA_2010.pdf", } @InProceedings{SCI:Liz2010a, author = "M.A.S. Lizier and M.F. Siqueira and J.D. Daniels II and C.T. Silva and L.G. Nonato", title = "Template-based Remeshing for Image Decomposition", booktitle = "Proceedings of the 23rd SIBGRAPI Conference on Graphics, Patterns and Images", pages = "95--102", year = "2010", url = "https://publications.utah.edu/publications/lizier10/Lizier_SIBGRAPI2010.pdf", } @InProceedings{SCI:Lui2010a, author = "J. Luitjens and M. Berzins", title = "Improving the Performance of Uintah: A Large-Scale Adaptive Meshing Computational Framework", booktitle = "Proceedings of the 24th {IEEE} International Parallel and Distributed Processing Symposium ({IPDPS10})", pages = "1--10", year = "2010", location = "Atlanta, GA", keywords = "csafe, c-safe, scirun, uintah, fires, explosions, simulation", url = "https://publications.utah.edu/publications/luitjens10/Luitjens_ipdps2010.pdf", } @InBook{SCI:Lui2010b, author = "J. Luitjens and J. Guilkey and T. Harman and B. Worthen and S.G. Parker", title = "Adaptive Computations in the Uintah Framework", booktitle = "Advanced Computational Infastructures for Parallel/Distributed Adapative Applications", year = "2010", chapter = "1", publisher = "Wiley Press", url = "https://publications.utah.edu/publications/luitjens10/Luitjens_Uintah2010a.pdf", } @PhdThesis{SCI:Lui2010c, author = "J. Luitjens", title = "The Scalability of Parallel Adaptive Mesh Refinement Within Uintah", year = "2010", school = "School of Computing, University of Utah", url = "https://publications.utah.edu/publications/Lui2010c/Luitjens_PhDThesis2010.pdf", } @Article{SCI:Mah2010a, author = "C. Mahnkopf and T.J. Badger and N.S. Burgon and M. Daccarett and T.S. Haslam and C.T. Badger and C.J. McGann and N. Akoum and E. Kholmovski and R.S. Macleod and N.F. Marrouche", title = "Evaluation of the left atrial substrate in patients with lone atrial fibrillation using delayed-enhanced {MRI}: implications for disease progression and response to catheter ablation", journal = "Heart Rhythm", volume = "7", number = "10", pages = "1475--1481", year = "2010", keywords = "af, atrial fibrillation, ablation", url = "https://publications.utah.edu/publications/mahnkopf10/mahnkopf2010.pdf", } @InProceedings{SCI:Mar2010a, author = "C. Marc and C. Vachet and J.E. Blocher and G. Gerig and J.H. Gilmore and M.A. Styner", title = "Changes of MR and DTI appearance in early human brain development", booktitle = "Proceedings of SPIE Medical Imaging 7623, 762324", year = "2010", } @TechReport{SCI:Men2010a, author = "Q. Meng and J. Luitjens and M. Berzins", title = "Dynamic Task Scheduling for Scalable Parallel AMR in the Uintah Framework", number = "UUSCI-2010-001", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "csafe, c-safe, uintah, scirun, fluid structure, amr, mpm", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-001.pdf", } @InProceedings{SCI:Men2010b, author = "Q. Meng and J. Luitjens and M. Berzins", title = "Dynamic Task Scheduling for the Uintah Framework", booktitle = "Proceedings of the 3rd {IEEE} Workshop on Many-Task Computing on Grids and Supercomputers ({MTAGS10})", pages = "1--10", year = "2010", url = "https://publications.utah.edu/publications/Men2010b/Meng_TaskSchedulingUintah2010.pdf", } @Article{SCI:Mey2010a, author = "M.D. Meyer and T. Munzner and A. DePace and H. Pfister", title = "{MulteeSum}: A Tool for Comparative Spatial and Temporal Gene Expression Data", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of {InfoVis} 2010)", volume = "16", number = "6", pages = "908--917", year = "2010", url = "https://publications.utah.edu/publications/meyer10/Meyer_multeesum2010.pdf", } @Article{SCI:Mey2010b, author = "M.D. Meyer and B. Wong and M. Styczynski and T. Munzner and H. Pfister", title = "Pathline: A Tool for Comparative Functional Genomics", journal = "Computer Graphics Forum", volume = "29", number = "3", pages = "1043--1052", year = "2010", publisher = "Wiley-Blackwell", month = "Aug", url = "https://publications.utah.edu/publications/Mey2010b/Meyer_Pathline2010.pdf", } @Article{SCI:Mir2010a, author = "H. Mirzaee and J.K. Ryan and R.M. Kirby", title = "Quantificiation of Errors Introduced in the Numerical Approximation and Implementation of Smoothness-Increasing Accuracy Conserving (SIAC) Filtering of Discontinuous Galerkin (DG) Fields", journal = "Journal of Scientific Computing", volume = "45", pages = "447-470", year = "2010", url = "https://publications.utah.edu/publications/mirzaee10/Mirzaee_JSC2010.pdf", } @InProceedings{SCI:Pai2010a, author = "A.R.C. Paiva and T. Tasdizen", title = "Fast Semi-Supervised Image Segmentation by Novelty Selection", booktitle = "Proceedings of {IEEE} International Conference on Acoustics, Speech and Signal Processing", pages = "1054--1057", year = "2010", month = "March", location = "Dallas, Texas", url = "https://publications.utah.edu/publications/paiva10/Paiva_ICASSP2010.pdf", } @InCollection{SCI:Pai2010b, author = "A.R.C. Paiva and I. Park and J.C. Principe", title = "Inner products for representation and learning in the spike train domain", booktitle = "Statistical Signal Processing for Neuroscience and Neurotechnology", pages = "265--309", year = "2010", editor = "Karim G. Oweiss", chapter = "8", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Pai2010b/2010d.pdf", } @InCollection{SCI:Pai2010c, author = "A.R.C. Paiva and I. Park and J.C. Principe", title = "Optimization in Reproducing Kernel Hilbert Spaces of Spike Trains", booktitle = "Computational Neuroscience", pages = "3--29", year = "2010", editor = "W. Chaovalitwongse et al.", publisher = "Springer", isbn = "978-0-387-88629-9", url = "https://publications.utah.edu/publications/Pai2010c/Paiva_2010a.pdf", } @Article{SCI:Pai2010d, author = "A.R.C. Paiva and I. Park and J.C. Principe", title = "A comparison of binless spike train measures", journal = "Neural Computing and Applications", volume = "19", number = "3", pages = "405--419", year = "2010", url = "https://publications.utah.edu/publications/paiva10/Paiva_2010b.pdf", } @InProceedings{SCI:Pai2010e, author = "A.R.C. Paiva and T. Tasdizen", title = "Detection of Salient Image Points using Manifold Structure", booktitle = "Proc. {IEEE} Intl. Conference on Pattern Recognition", pages = "1389--1392", year = "2010", location = "Istanbul, Turkey", url = "https://publications.utah.edu/publications/paiva10/Paiva_2010h.pdf", } @InProceedings{SCI:Pai2010f, author = "A.R.C. Paiva and E. Jurrus and T. Tasdizen", title = "Using Sequential Context for Image Analysis", booktitle = "Proc. {IEEE} Intl. Conference on Pattern Recognition", pages = "2800--2803", year = "2010", location = "Istanbul, Turkey", url = "https://publications.utah.edu/publications/paiva10/Paiva_2010g.pdf", } @InProceedings{SCI:Pan2010a, author = "Y. Pan and R.T. Whitaker and A. Cheryauka and D. Ferguson", title = "Regularized {3D} Iterative Reconstruction on a Mobile {C-ARM} {CT}", booktitle = "Proceedings of The First {CT} Meeting", pages = "(accepted)", year = "2010", location = "Salt Lake City, UT", keywords = "Cone-beam CT, iterative reconstruction, SART, GPU, TV regularization", url = "https://publications.utah.edu/publications/pan10/Pan_First_CT_Meeting.pdf", } @InProceedings{SCI:Pan2010b, author = "Y. Pan and R.T. Whitaker and A. Cheryauka and D. Ferguson", title = "TV-regularized Iterative Image Reconstruction on a Mobile C-ARM CT", booktitle = "Proceedings of SPIE Medical Imaging 2010", volume = "7622", pages = "(published online)", year = "2010", location = "San Diego, CA", url = "https://publications.utah.edu/publications/pan10/Pan_SPIE2010.pdf", } @Article{SCI:Pau2010a, author = "F.V. Paulovich and C.T. Silva and L.G. Nonato", title = "Two-Phase Mapping for Projecting Massive Data Sets", booktitle = "{IEEE} Tr", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "16", number = "6", pages = "1281--1290", year = "2010", month = "Nov", url = "https://publications.utah.edu/publications/Pau2010a/Paulovich_TVCG2010.pdf", } @Article{SCI:Peg2010a, author = "V. Pegoraro and M. Schott and S.G. Parker", title = "A Closed-Form Solution to Single Scattering for General Phase Functions and Light Distributions", journal = "Computer Graphics Forum", volume = "29", number = "4", pages = "1365--1374", year = "2010", publisher = "Wiley-Blackwell", month = "Aug", url = "https://publications.utah.edu/publications/Peg2010a/Pegoraro_EGSR2010.pdf", } @InProceedings{SCI:Pil2010a, author = "T.A. Pilcher and J.D. Tate and J.G. Stinstra and E.V. Saarel and M.D. Puchalski and and R.S. MacLeod", title = "Partially extracted defibrillator coils and pacing leads alter defibrillation thresholds", booktitle = "Proceedings of the 15th International Academy of Cardiology World Congress of Cardiology", year = "2010", url = "https://publications.utah.edu/publications/pilcher10/Pilcher_2010.pdf", } @Article{SCI:Pot2010a, author = "K. Potter and J.M. Kniss and R. Riesenfeld and C.R. Johnson", title = "Visualizing Summary Statistics and Uncertainty", journal = "Computer Graphics Forum", volume = "29", number = "3", pages = "823--831", year = "2010", publisher = "Wiley-Blackwell", month = "Aug", url = "https://publications.utah.edu/publications/Pot2010a/Potter_EuroVis10.pdf", } @InProceedings{SCI:Pra2010a, author = "M.W. Prastawa and N. Sadeghi and J.H. Gilmore and W. Lin and G. Gerig", title = "A new framework for analyzing white matter maturation in early brain development", booktitle = "Proceedings of the 2010 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro", pages = "97--100", year = "2010", month = "April", isbn = "978-1-4244-4125-9", url = "https://publications.utah.edu/publications/prastawa10/ISBI2010_Prastawa_EarlyMaturationMeasures.pdf", url = "https://publications.utah.edu/publications/prastawa10/sadeghi_prastawa_isbi_2010.pdf", } @Article{SCI:Ree2010a, author = "S.P. Reese and S.A. Maas and J.A. Weiss", title = "Micromechanical models of helical superstructures in ligament and tendon fibers predict large poisson's ratios", journal = "Journal of Biomechanics", volume = "43", number = "7", pages = "1394--1400", year = "2010", keywords = "mrl", url = "https://publications.utah.edu/publications/reese10/reese_jbme_2010.pdf", } @InProceedings{SCI:Sad2010a, author = "N. Sadeghi and M.W. Prastawa and J.H. Gilmore and W. Lin and G. Gerig", title = "Spatio-Temporal Analysis of Early Brain Development", booktitle = "Proceedings {IEEE} Asilomar Conference on Signals, Systems and Computers", pages = "777--781", year = "2010", url = "https://publications.utah.edu/publications/sadeghi10/sadeghi_asilomar2010.pdf", } @Article{SCI:Sad2010b, author = "N. Sadeghi and M.W. Prastawa and J.H. Gilmore and W. Lin and G. Gerig", title = "Towards Analysis of Growth Trajectory through Multi-modal Longitudinal MR Imaging", journal = "SPIE Medical Imaging 2010: Image Processing", volume = "7623, 76232U", pages = "(published online)", year = "2010", editor = "Benoit M. Dawant and David R. Haynor", month = "March", url = "https://publications.utah.edu/publications/sadeghi10/SPIE2010_Sadeghi_EarlyLongitudinal.pdf", } @Article{SCI:Sam2010a, author = "A.A. Samsonov and J.V. Velikina and Y.K. Jung and E.G. Kholmovski and C.R. Johnson and W.F. Block", title = "POCS-enhanced correction of motion artifacts in parallel MRI", journal = "Magnetic Resonance in Medicine", volume = "63", number = "4", pages = "1104--1110", year = "2010", month = "May", url = "https://publications.utah.edu/publications/samsonov10/Samsonov_POCS2010.pdf", } @InProceedings{SCI:San2010a, author = "Allen R. Sanderson and Scott Kruger and and Stephane Either", title = "Visualization and Analysis Tools for Assisting in Evaluating Fusion Simulations", booktitle = "Proceedings of the Sherwood Fusion Theory Conference", year = "2010", url = "https://publications.utah.edu/publications/sanderson10/ARS_Sherwood2010.pdf", url = "https://publications.utah.edu/publications/sanderson10/ARS_SherwoodPoster2010.pdf", } @Article{SCI:San2010b, author = "A.R. Sanderson and G. Chen and X. Tricoche and D. Pugmire and S. Kruger and J. Breslau", title = "Analysis of Recurrent Patterns in Toroidal Magnetic Fields", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "16", number = "6", pages = "1431-1440", year = "2010", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/San2010b/ARS_Fusion_Vis2010.pdf", } @InProceedings{SCI:Sch2010a, author = "J. Schmidt and M. Berzins", title = "Development of the Uintah Gateway for Fluid-Structure-Interaction Problems", booktitle = "Proceedings of the Teragrid 2010 Conference", year = "2010", publisher = "ACM", keywords = "Uintah, csafe", url = "https://publications.utah.edu/publications/Sch2010a/UintahGateway.pdf", } @TechReport{SCI:Sch2010b, author = "C.E. Scheidegger and T. Etiene and L.G. Nonato and C.T. Silva", title = "Edge Flows: Stratified Morse Theory for Simple, Correct Isosurface Extraction", number = "UUSCI-2010-002", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-002.pdf", } @TechReport{SCI:Sch2010c, author = "M. Schott and P. Grosset and T. Martin and V. Pegoraro and C.D. Hansen", title = "Depth of Field Effects for Interactive Direct Volume Rendering", number = "UUSCI-2010-005", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-005.pdf", } @Article{SCI:Sch2010d, author = "C. Schlimper and O. Nemitz and U. Dorenbeck and J. Scorzin and R.T. Whitaker and T. Tasdizen and M. Rumpf and K. Schaller", title = "Restoring three-dimensional magnetic resonance angiography images with mean curvature motion", journal = "Neurological Research", volume = "32", number = "1", pages = "87--93", year = "2010", month = "February", note = "Epub 2009 Nov 26", url = "https://publications.utah.edu/publications/schlimper10/Schlimper_NeuroRes2010.pdf", } @Article{SCI:Seg2010a, author = "N.M. Segerson and M. Daccarett and T.J. Badger and A. Shabaan and N. Akoum and E.N. Fish and S. Rao and N.S. Burgon and Y. Adjei-Poku and E. Kholmovski and S. Vijayakumar and E.V. DiBella and R.S. MacLeod and N.F. Marrouche", title = "Magnetic resonance imaging-confirmed ablative debulking of the left atrial posterior wall and septum for treatment of persistent atrial fibrillation: rationale and initial experience", journal = "Journal of Cardiovascular Electrophysiology", volume = "21", number = "2", pages = "126--132", year = "2010", keywords = "cvrti", url = "https://publications.utah.edu/publications/segerson10/Segerson_JCardElect2010.pdf", } @InProceedings{SCI:Sey2010a, author = "M. Seyedhosseini and A.R.C. Paiva and T. Tasdizen", title = "Image Parsing with a Three-State Series Neural Network Classifier", booktitle = "Proc. {IEEE} Intl. Conference on Pattern Recognition", pages = "4508--4511", year = "2010", location = "Istanbul, Turkey", url = "https://publications.utah.edu/publications/seyedhosseini10/Seyedhosseini_2010a.pdf", } @InProceedings{SCI:Sil2010a, author = "C. Silva and E. Anderson and E. Santos and J. Freire", title = "Using VisTrails and Provenance for Teaching Scientific Visualization", booktitle = "EUROGRAPHICS 2010 Educator Program", year = "2010", note = "Awarded Best Paper!", keywords = "vistrails, provenance, workflows", url = "https://publications.utah.edu/publications/silva10/vistrails-teaching-eurographics2010.pdf", } @Article{SCI:Sin2010a, author = "N.P. Singh and P.T. Fletcher and J.S. Preston and L. Ha and R. King and J.S. Marron and M. Wiener and S. Joshi", title = "Multivariate Statistical Analysis of Deformation Momenta Relating Anatomical Shape to Neuropsychological Measures", journal = "Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010, Lecture Notes in Computer Science (LCNS)", volume = "6363/2010", pages = "529-537", year = "2010", url = "https://publications.utah.edu/publications/singh10/Singh_MICCAI2010.pdf", } @Article{SCI:Ste2010a, author = "M. Steffen and R.M. Kirby and M. Berzins", title = "Decoupling and Balancing of Space and Time Errors in the Material Point Method (MPM)", journal = "International Journal for Numerical Methods in Engineering", volume = "82", number = "10", pages = "1207--1243", year = "2010", keywords = "c-safe, W-7405-ENG-48", url = "https://publications.utah.edu/publications/steffen09/steffen_09_IJNME_mpm_preprint.pdf", } @Article{SCI:Sti2010a, author = "J.G. Stinstra and R.S. MacLeod and C.S. Henriquez", title = "Incorporating Histology into a 3D Microscopic Computer Model of Myocardium to Study Propagation at a Cellular Level", journal = "Annals of Biomedical Engineering (ABME)", volume = "38", number = "4", pages = "3399--1414", year = "2010", url = "https://publications.utah.edu/publications/stinstra10/Stinstra_ABME2010.pdf", } @Article{SCI:Swe2010a, author = "D. Swenson and J.A. Levine and Z. Fu and J.D. Tate and R.S. MacLeod", title = "The Effect of Non-Conformal Finite Element Boundaries on Electrical Monodomain and Bidomain Simulations", journal = "Computing in Cardiology", volume = "37", pages = "97--100", year = "2010", publisher = "IEEE", issn = "0276-6547", url = "https://publications.utah.edu/publications/Swe2010a/Swenson_CinC2010.pdf", } @Article{SCI:Tas2010a, author = "T. Tasdizen and P. Koshevoy and B.C. Grimm and J.R. Anderson and B.W. Jones and C.B. Watt and R.T. Whitaker and R.E. Marc", title = "Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy", journal = "Journal of Neuroscience Methods", volume = "193", number = "1", pages = "132--144", year = "2010", url = "https://publications.utah.edu/publications/tasdizen10/Tasdizen_JNM2010.pdf", } @Article{SCI:Tat2010b, author = "J.D. Tate and J.G. Stinstra and T.A. Pilcher and R.S. MacLeod", title = "Implantable Cardioverter Defibrillator Predictive Simulation Validation", journal = "Computing in Cardiology", pages = "853-–856", year = "2010", month = "September", url = "https://publications.utah.edu/publications/tate10/Tate_CinC2010b.pdf", } @InProceedings{SCI:Tch2010a, author = "R. Tchoua and S. Klasky and N. Podhorszki and B. Grimm and A. Khan and E. Santos and C.T. Silva and P. Mouallem and M. Vouk", title = "Collaborative Monitoring and Analysis for Simulation Scientists", booktitle = "Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010)", pages = "235--244", year = "2010", keywords = "collaboration, simulation", url = "https://publications.utah.edu/publications/tchoua10/Tchoua_CTS2010.pdf", } @TechReport{SCI:Tie2010a, author = "J. Tierny and J. Daniels II and L.G. Nonato and V. Pascucci and C.T. Silva", title = "Interactive Quadrangulation with Reeb Atlases and Connectivity Textures", number = "UUSCI-2010-006", year = "2010", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2010-006.pdf", } @Article{SCI:Tus2010a, author = "N.J. Tustison and S.P. Awate and J. Cai and T.A. Altes and G.W. Miller and E.E. de Lange and J.P. Mugler 3rd and J.C. Gee", title = "Pulmonary kinematics from tagged hyperpolarized helium-3 MRI", journal = "Journal of Magnetic Resonance Imaging, JMRI", volume = "31", number = "5", pages = "1236--1241", year = "2010", url = "https://publications.utah.edu/publications/tustison10/Tustison_JMRI2010.pdf", } @Article{SCI:Tut2010a, author = "C. Tuttle and L.G. Nonato and C.T. Silva", title = "{PedVis:} A Structured, Space-Efficient Technique for Pedigree Visualization", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "16", number = "6", pages = "1063--1072", year = "2010", month = "Nov", url = "https://publications.utah.edu/publications/Tut2010a/Tuttle_TVCG2010.pdf", } @Unpublished{SCI:Van2010a, author = "A. van Dam and J. Foley and J. Guttag and P. Hanrahan and C.R. Johnson and R. Katz and H. Kelly and P. Lee and D.E. Shaw", title = "{CRA-E} White Paper: Creating Environments for Computational Researcher Education", year = "2010", month = "August", note = "Computing Research Association (CRA)", url = "https://publications.utah.edu/publications/Van2010a/CRA-E-Researcher-Education.pdf", } @Article{SCI:Vo2010a, author = "H.T. Vo and D.K. Osmari and B. Summa and J.L.D. Comba and V. Pascucci and C.T. Silva", title = "Streaming-Enabled Parallel Dataflow Architecture for Multicore Systems", journal = "Computer Graphics Forum", volume = "29", number = "3", pages = "1073--1082", year = "2010", url = "https://publications.utah.edu/publications/vo10/Vo_CGF2010a.pdf", } @Article{SCI:Vo2010b, author = "H.T. Vo and D.K. Osmari and B. Summa and J.L.D. Comba and V. Pascucci and C.T. Silva", title = "Streaming-Enabled Parallel Dataflow Architecture for Multicore Systems", journal = "Computer Graphics Forum", volume = "29", number = "3", pages = "1073--1082", year = "2010", publisher = "Wiley-Blackwell", month = "Aug", url = "https://publications.utah.edu/publications/Vo2010b/Vo_CGF2010.pdf", } @Article{SCI:Vos2010a, author = "P.E.J. Vos and S.J. Sherwin and R.M. Kirby", title = "h-p Efficiently: Implementing Finite and Spectral/hp Element Methods to Achieve Optimal Performance for Low- and High-Order Discretisations", journal = "Journal of Computational Physics", volume = "229", number = "13", pages = "5161--5181", year = "2010", url = "https://publications.utah.edu/publications/vos10/HtoPEfficiently_abstract.pdf", } @InProceedings{SCI:Wal2010b, author = "M. Waldner and W. Puff and A. Lex and M. Streit and D. Schmalstieg", title = "Visual Links across Applications", booktitle = "Proceedings of the Conference on Graphics Interface (GI '10)", pages = "129--136", year = "2010", publisher = "Canadian Human-Computer Communications Society", isbn = "1568817125", url = "https://publications.utah.edu/publications/Wal2010b/p129-waldner.pdf", } @Article{SCI:Wan2010a, author = "D.F. Wang and R.M. Kirby and C.R. Johnson", title = "Resolution Strategies for the Finite-Element-Based Solution of the {ECG} Inverse Problem", journal = "{IEEE} Transactions on Biomedical Engineering", volume = "57", number = "2", pages = "220--237", year = "2010", month = "February", url = "https://publications.utah.edu/publications/wang10/Wang_TBME2010.pdf", } @InProceedings{SCI:Wan2010b, author = "Y. Wan and C.D. Hansen", title = "Fast Volumetric Data Exploration with Importance-Based Accumulated Transparency Modulation", booktitle = "Proceedings of {IEEE/EG} International Symposium on Volume Graphics 2010", pages = "61--68", year = "2010", url = "https://publications.utah.edu/publications/Wan2010b/wan_vg2010_fast.pdf", } @InProceedings{SCI:Wan2010c, author = "D.F. Wang and R.M. Kirby and R.S. MacLeod and C.R. Johnson", title = "A New Family of Variational-Form-Based Regularizers for Reconstructing Epicardial Potentials from Body-Surface Mapping", booktitle = "Computing in Cardiology, 2010", pages = "93--96", year = "2010", url = "https://publications.utah.edu/publications/wang10/Wang_CinC2010.pdf", } @InProceedings{SCI:Wol2010a, author = "C.H. Wolters and S. Lew and R.S. MacLeod and M.S. H{\"a}m{\"a}l{\"a}inen", title = "Combined {EEG/MEG} source analysis using calibrated finite element head models", booktitle = "Proc. of the 44th Annual Meeting, DGBMT", year = "2010", address = "Rostock-Warnem{\"u}nde, Germany, Oct.5-8, 2010", note = "to appear, http://conference.vde.com/bmt-2010", url = "https://publications.utah.edu/publications/wolters10/BMT-paper-WoltersEtAl-Final.pdf", } @Article{SCI:Zha2010a, author = "H. Zhang and S.P. Awate and S.R. Das and J.H. Woo and E.R. Melhem and J.C. Gee and P.A. Yushkevich", title = "A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features", journal = "Medical Image Analysis", volume = "14", number = "5", pages = "666--673", year = "2010", url = "https://publications.utah.edu/publications/zhang10/Zhang_MIA2010.pdf", } @Article{SCI:And2009a, author = "J.R. Anderson and B.W. Jones and J.-H. Yang and M.V. Shaw and C.B. Watt and P. Koshevoy and J. Spaltenstein and E. Jurrus and Kannan U.V. and R.T. Whitaker and D. Mastronarde and T. Tasdizen and R.E. Marc", title = "A Computational Framework for Ultrastructural Mapping of Neural Circuitry", title_url = "http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000074", journal = "PLoS Biology", volume = "7", number = "3", pages = "e74", year = "2009", keywords = "ucnia, crcns, ir-tweak, ir-tools, ncr toolset, neural circuit reconstruction, electron microscopy registration", url = "https://publications.utah.edu/publications/anderson09/Anderson_PLoSBio2009.pdf", } @InProceedings{SCI:And2009b, author = "J. Anderson and B. Jones and J. Yang and M. Shaw and C. Watt and P. Koshevoy and J. Spaltenstein and E. Jurrus and Kannan U.V. and R.T. Whitaker and D. Mastronarde and T. Tasdizen and R. Marc", title = "Ultra Structural Mapping of Neural Circuitry: A Computational Framework", booktitle = "{IEEE} International Symposium on Biomedical Engineering ({ISBI} 2009)", pages = "1135--1137", year = "2009", keywords = "crcns, neural circuitry", url = "https://publications.utah.edu/publications/anderson09/Anderson_ISBI2009.pdf", } @Article{SCI:Arc2009a, author = "R. Archibald and A. Gelb and R. Saxena and D. Xiu", title = "Discontinuity Detection in Multivariate Space for Stochastic Simulations", journal = "Journal of Computational Physics", volume = "228", number = "7", pages = "2676--2689", year = "2009", keywords = "Stochastic partial differential equations, Multivariate edge detection, Generalized polynomial chaos method", url = "https://publications.utah.edu/publications/archibald09/Archibald_JCP2009.pdf", } @Article{SCI:Bad2009a, author = "T.J. Badger and R.S. Oakes and M. Daccarett and N.S. Burgon and N. Akoum and E.N. Fish and J.J. Blauer and S.N. Rao and Y. Adjei-Poku and E.G. Kholmovski and S. Vijayakumar and E.V. Di Bella and R.S. MacLeod and N.F. Marrouche", title = "Temporal Left Atrial Lesion Formation After Ablation of Atrial Fibrillation", journal = "Heart Rhythm", volume = "6", number = "2", pages = "161--168", year = "2009", month = "February", url = "https://publications.utah.edu/publications/badger09/TemporalLeftAtrialLession.pdf", } @Article{SCI:Bad2009b, author = "T.J. Badger and Y.A. Adjei-Poku and N.S. Burgon and S. Kalvaitis and A. Shaaban and D.N. Sommers and J.J.E. Blauer and E.N. Fish N. Akoum and T.S. Haslem and E.G. Kholmovski and R.S. MacLeod and D.G. Adler and N.F. Marrouche", title = "Initial Experience of Assessing Esophageal Tissue Injury and Recovery Using Delayed-Enhancement MRI After Atrial Fibrillation Ablation", journal = "Circulation: Arrhythmia and Electrophysiology", volume = "2", pages = "620--625", year = "2009", url = "https://publications.utah.edu/publications/badger09/Badger_CAE2009a.pdf", } @TechReport{SCI:Ber2009a, author = "M. Berzins", title = "Data Bounded Polynomials and Preserving Positivity in High Order ENO and WENO Methods", number = "UUSCI-2009-003", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-003.pdf", } @Article{SCI:Bet2009a, author = "E.W. Bethel and C.R. Johnson and S. Ahern and J. Bell and P.-T. Bremer and H. Childs and E. Cormier-Michel and M. Day and E. Deines and P.T. Fogal and C. Garth and C.G.R. Geddes and H. Hagen and B. Hamann and C.D. Hansen and J. Jacobsen and K.I. Joy and J. Krüger and J. Meredith and P. Messmer and G. Ostrouchov and V. Pascucci and K. Potter and Prabhat and D. Pugmire and O. Rubel and A.R. Sanderson and C.T. Silva and D. Ushizima and G.H. Weber and B. Whitlock and K. Wu", title = "Occam's Razor and Petascale Visual Data Analysis", journal = "Journal of Physics: Conference Series", volume = "180", number = "012084", pages = "(published online)", year = "2009", series = "Journal of Physics: Conference Series", url = "https://publications.utah.edu/publications/Bet2009a/Bethel_IOPScience2009.pdf", } @Article{SCI:Bro2009a, author = "J. Brouillat and C. Bouville and B. Loos and C.D. Hansen and K. Bouatouch", title = "A Bayesian Monte Carlo Approach to Global Illumination", journal = "Computer Graphics Forum Journal, Early View", volume = "28", number = "8", pages = "2315--2329", year = "2009", month = "October", url = "https://publications.utah.edu/publications/brouillat09/Brouillat_CGF2009.pdf", } @Article{SCI:Cal2009a, author = "M. Callahan and M.J. Cole and J.F. Shepherd and J.G. Stinstra and C.R. Johnson", title = "A Meshing Pipeline for Biomedical Models", journal = "Engineering with Computers", volume = "25", number = "1", pages = "115-130", year = "2009", publisher = "SpringerLink", url = "https://publications.utah.edu/publications/callahan09/scirun_meshing.pdf", } @InProceedings{SCI:Cho2009a, author = "A.N.M. Imroz Choudhury and S.G. Parker", title = "Ray Tracing NPR-Style Feature Lines", booktitle = "Proceedings of the 7th International Symposium on Non-Photorealistic Animation and Rendering ({NPAR}) 2009", pages = "5--14", year = "2009", keywords = "ray-tracing", url = "https://publications.utah.edu/publications/choudhury09/NPR-lines.NPAR09.pdf", } @Article{SCI:Dan2009a, author = "J.D. Daniels and C.T. Silva and E. Cohen", title = "Semi-Regular Quadrilateral-only Remeshing from Simplified Base Domains", journal = "Computer Graphics Forum", volume = "28", number = "5", pages = "1427--1435", year = "2009", series = "Computer Graphics Forum", publisher = "Wiley-Blackwell", month = "July", keywords = "meshing", url = "https://publications.utah.edu/publications/Dan2009a/sgp2009_quadMap.pdf", } @Article{SCI:Dan2009b, author = "J.D. Daniels and C.T. Silva and E. Cohen", title = "Localized Quadrilateral Coarsening", journal = "Computer Graphics Forum", volume = "28", number = "5", pages = "1437--1444", year = "2009", publisher = "Wiley-Blackwell", month = "July", keywords = "meshing", url = "https://publications.utah.edu/publications/Dan2009b/sgp2009_qCoarsen.pdf", } @InProceedings{SCI:Dat2009a, author = "M. Datar and J. Cates and P.T. Fletcher and S. Gouttard and G. Gerig and R.T. Whitaker", title = "Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging", booktitle = "Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009", volume = "5762", pages = "167--174", year = "2009", series = "Lecture Notes in Computer Science LNCS", url = "https://publications.utah.edu/publications/datar09/Datar_LNCS2009.pdf", } @Article{SCI:Die2009a, author = "C. Deitrich and C.E. Scheidegger and J. Schreiner and J. Comba and L.P. Nedel and C.T. Silva", title = "Edge Transformations for Improving Mesh Quality of Marching Cubes", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "15", number = "1", pages = "150--159", year = "2009", month = "Sept/Oct", keywords = "meshing", url = "https://publications.utah.edu/publications/dietrich09/tvcg2009.pdf", } @Article{SCI:Dur2009a, author = "S. Durrleman and X. Pennec and A. Trouvé and G. Gerig and N. Ayache", title = "Spatiotemporal atlas estimation for developmental delay detection in longitudinal datasets", journal = "Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009", volume = "5761", pages = "297--304", year = "2009", series = "Lecture Notes in Computer Science LNCS", url = "https://publications.utah.edu/publications/durrleman09/Durrleman_MICCAI2009.pdf", } @InProceedings{SCI:Ell2009a, author = "T. Ellkvist and L. Stromback and L. Lins and J. Freire", title = "A First Study on Strategies for Generating Workflow Snippets", booktitle = "Proceedings of the ACM SIGMOD Intenational Workshop on Keyword Search on Structured Data (KEYS)", pages = "15--20", year = "2009", isbn = "978-1-60558-570-3", keywords = "data searching", url = "https://publications.utah.edu/publications/ellkvist09/workflowsnippets-keys2009.pdf", } @InProceedings{SCI:Ell2009b, author = "T. Ellkvist and D. Koop and J. Freire and C.T. Silva and L. Stromback", title = "Using Mediation to Achieve Provenance Interoperability", booktitle = "Proceedings of the {IEEE} International Workshop on Scientific Workflows, 2009", pages = "291--298", year = "2009", isbn = "978-0-7695-3708-5", keywords = "workflow management, provenance, vistrails", url = "https://publications.utah.edu/publications/ellkvist09/provinterop-swf2009.pdf", } @Unpublished{SCI:Ell2009c, author = "M. Ellisman and R. Stevens and M. Colvin and T. Schlick and E. Delong and G. Olsen and J. George and G. Karniakadis and C.R. Johnson and N. Sematova", title = "Scientific Grand Challenges: Opportunities in biology at the Extreme Scale of Computing", year = "2009", month = "August", note = "DOE Office of Advanced Scientific Computing Research", url = "https://publications.utah.edu/publications/Ell2009c/Ellisman_BiologyReport2009.pdf", } @Article{SCI:Eti2009a, author = "T. Etiene and C.E. Scheidegger and L.G. Nonato and R. Kirby and C.T. Silva", title = "Verifiable Visualization for Isosurface Extraction", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1227--1234", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/etiene2009/verifiable-vis.pdf", } @Article{SCI:Fle2009a, author = "P.T. Fletcher PT and S. Venkatasubramanian and S. Joshi", title = "The geometric median on Riemannian manifolds with application to robust atlas estimation", journal = "Neuroimage", volume = "45", number = "1", pages = "S143--S152", year = "2009", month = "March", url = "https://publications.utah.edu/publications/fletcher09/Fletcher_NeuroImage2009.pdf", } @InProceedings{SCI:Fle2009b, author = "P.T. Fletcher and J. Moeller and J.M. Phillips and S. Venkatasubramanian", title = "Computing Hulls In Positive Definite Space", booktitle = "In Proceedings of the 19th Fall Workshop on Computational Geometry", year = "2009", month = "November", url = "https://publications.utah.edu/publications/fletcher09/Fletcher_WorksCompGeo2009.pdf", } @InProceedings{SCI:Fog2009b, author = "T. Fogal and J. Krüger", title = "Size Matters - Revealing Small Scale Structures in Large Datasets", booktitle = "Proceedings of the World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany", volume = "25/13", pages = "41--44", year = "2009", series = "IFMBE Proceedings", publisher = "Springer Berlin Heidelberg", url = "https://publications.utah.edu/publications/Fog2009b/Fogal_IFMBE2009b.pdf", } @Article{SCI:Fre2009a, author = "J. Freire", title = "Provenance Management: Challenges and Opportunities", journal = "Datenbanksysteme in Business, Technologie und Web (BTW)", pages = "4", year = "2009", } @Article{SCI:Gao2009a, author = "W. Gao and W. Lin and Y. Chen and G. Gerig and J.K. Smith and V. Jewells and J.H. Gilmore", title = "Temporal and Spatial Development of Axonal Maturation and Myelination of White Matter in the Developing Brain", journal = "American Journal of Neuroradiology (AJNR)", volume = "30", pages = "290--296", year = "2009", url = "https://publications.utah.edu/publications/gao09/Gao_AJNR2009.pdf", } @Article{SCI:Gen2009a, author = "S.E. Geneser and R.M. Kirby and Brian Wang and B. Salter and S. Joshi", title = "Incorporating patient breathing variability into a stochastic model of dose deposition for stereotactic body radiation therapy", journal = "Information Processing in Medical Imaging", volume = "5636", pages = "688--700", year = "2009", series = "Lecture Notes in Computer Science LNCS", url = "https://publications.utah.edu/publications/geneser09/Geneser_LNCS2009.pdf", } @InCollection{SCI:Ger2009a, author = "S. Gerber and T. Tasdizen and S. Joshi and R.T. Whitaker", title = "On the Manifold Structure of the Space of Brain Images", booktitle = "Medical Image Computing and Computer-Assisted Intervention (MICCAI 2009)", pages = "305--312", year = "2009", publisher = "Springer", url = "https://publications.utah.edu/publications/Ger2009a/brainmanifold.pdf", } @InProceedings{SCI:Ger2009b, author = "S. Gerber and T. Tasdizen and R.T. Whitaker", title = "Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds", booktitle = "Proceedings of the 2009 International Conference on Computer Vison (ICCV 2009)", pages = "529--536", year = "2009", month = "September", issn = "1550-5499", url = "https://publications.utah.edu/publications/Ger2009b/kmm_iccv09.pdf", } @Article{SCI:Goo2009a, author = "C. Goodlett and P.T. Fletcher and J.H. Gilmore and G. Gerig", title = "Group analysis of DTI fiber tract statistics with application to neurodevelopment", journal = "Neuroimage", volume = "45", number = "1 (suppl 1)", pages = "S133--S142", year = "2009", url = "https://publications.utah.edu/publications/goodlett09/Goodlett_NeuroImage2009.pdf", } @Article{SCI:Goo2009b, author = "C. Goodlett and P.T. Fletcher and J.H. Gilmore and G. Gerig", title = "Group Analysis of DTI Fiber Tract Statistics with Application to Neurodevelopment", journal = "NeuroImage", volume = "45", pages = "S133--S142", year = "2009", month = "December", url = "https://publications.utah.edu/publications/Goo2009b/DTI_population.pdf", } @Article{SCI:Gou2009a, author = "S. Gouttard and M.W. Prastawa and E. Bullitt and W. Lin and C. Goodlett and G. Gerig", title = "Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties", journal = "Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009", volume = "5761", pages = "321--328", year = "2009", series = "Lecture Notes in Computer Science LNCS", url = "https://publications.utah.edu/publications/gouttard09/Gouttard_MICCAI2009.pdf", } @TechReport{SCI:Gui2009a, author = "J. Guilkey and T. Harman and J. Luitjens and J. Schmidt and J. Thornock and J.D. de St. Germain and S. Shankar and J. Peterson and C. Brownlee", title = "Uintah User Guide Version 1.1", number = "UUSCI-2009-007", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "csafe, c-safe, uintah, scirun, fire simulation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-007.pdf", } @InProceedings{SCI:Ha2009a, author = "L.K. Ha and J. Krüger and T. Fletcher and S. Joshi and C.T. Silva", title = "Fast Parallel Unbiased Diffeomorphic Atlas Construction on Multi-Graphics Processing Units", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization 2009", year = "2009", url = "https://publications.utah.edu/publications/Ha2009a/Ha_egpgv2009.pdf", } @Article{SCI:Ha2009b, author = "L.K. Ha and J. Krüger and C.T. Silva", title = "Fast 4-way parallel radix sorting on GPUs", journal = "Computer Graphic Forum", year = "2009", url = "https://publications.utah.edu/publications/Ha2009b/Ha_CGF2009.pdf", } @InCollection{SCI:Han2009a, author = "C.D. Hansen and C.R. Johnson and V. Pascucci and C.T. Silva", title = "Visualization for Data-Intensive Science", booktitle = "The Fourth Paradigm: Data-Intensive Science", pages = "153--164", year = "2009", editor = "S. Tansley and T. Hey and K. Tolle", publisher = "Microsoft Research", url = "https://publications.utah.edu/publications/hansen09/Vis-Book-Chapter-Aug09.pdf", } @Article{SCI:Haz2009a, author = "H.C. Hazlett and M.D. Poe and A.A. Lightbody and G. Gerig and J.R. MacFall and A.K. Ross and J. Provenzale and A. Martin and A.L. Reiss and J. Piven", title = "Teasing apart the heterogeneity of autism: Same behavior, different brains in toddlers with fragile X syndrome and autism", journal = "Journal of Neurodevelopmental Disorders", volume = "1", number = "1", pages = "81--90", year = "2009", url = "https://publications.utah.edu/publications/hazlett09/Hazlett_NeurodevelopDisord2009.pdf", } @Article{SCI:Hen2009a, author = "H.B. Henninger and S.A. Maas and J.H. Shepherd and S. Joshi and J.A. Weiss", title = "Transversely Isotropic Distribution of Sulfated Glycosaminoglycans in Human Medial Collateral Ligament: A Quantitative Analysis", journal = "Journal of Structural Biology", volume = "165", pages = "176-183", year = "2009", keywords = "mrl", url = "https://publications.utah.edu/publications/henninger09/henninger_jsb_2009.pdf", } @Article{SCI:Hen2009c, author = "H.B. Henninger and S.P. Reese and A.E. Anderson and J.A. Weiss", title = "Validation of computational models in biomechanics", journal = "Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine", volume = "224", number = "7", pages = "801--812", year = "2009", publisher = "SAGE Publications", url = "https://publications.utah.edu/publications/Hen2009c/henninger_pime_j_eng_med_2010_validation.pdf", } @Article{SCI:Hin2009a, author = "J. Hinkle and P.T. Fletcher and Brian Wang and B. Salter and S. Joshi", title = "4D MAP image reconstruction incorporating organ motion", journal = "Information Processing in Medical Imaging", volume = "5636", pages = "676--687", year = "2009", series = "Lecture Notes in Computer Science LNCS", url = "https://publications.utah.edu/publications/hinkle09/Hinkle_LCNS2009.pdf", } @Article{SCI:Isa2009a, author = "B.M. Isaacson and J.G. Stinstra and R.S. MacLeod and J.B. Webster and J.P. Beck and R.D. Bloebaum", title = "Bioelectric Analyses of an Osseointegrated Intelligent Implant Design System for Amputees", title_url = "http://www.jove.com/index/Details.stp?ID=1237", journal = "JoVE", volume = "29", year = "2009", url = "https://publications.utah.edu/publications/isaacson09/JoVE_Protocol_1237.pdf", } @Article{SCI:Jeo2009a, author = "W.-K. Jeong and J. Beyer and M. Hadwiger and A. Vazquez and H. Pfister and R.T. Whitaker", title = "Scalable and Interactive Segmentation and Visualization of Neural Processes in {EM} Datasets", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1505--1514", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/jeong09/Jeong_TVCG2009.pdf", } @Article{SCI:Jur2009a, author = "E. Jurrus and M. Hardy and T. Tasdizen and P.T. Fletcher and P. Koshevoy and C.-B. Chien and W. Denk and R.T. Whitaker", title = "Axon Tracking in Serial Block-Face Scanning Electron Microscopy", journal = "Medical Image Analysis (MEDIA)", volume = "13", number = "1", pages = "180--188", year = "2009", publisher = "Elsevier", month = "February", keywords = "CRCNS, neuron tracking", } @TechReport{SCI:Jur2009b, author = "E. Jurrus and A.R.C. Paiva and S. Watanabe and R.T. Whitaker and E.M. Jorgensen and T. Tasdizen", title = "Serial Neural Network Classifier for Membrane Detection using a Filter Bank.", number = "UUSCI-2009-006", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/jurrus09/UUSCI-2009-006.pdf", } @InProceedings{SCI:Jur2009c, author = "E. Jurrus and A.R.C. Paiva and S. Watanabe and R. Whitaker and E.M. Jorgensen and T. Tasdizen", title = "Serial Neural Network Classifier for Membrane Detection using a Filter Bank", booktitle = "Proc. Workshop on Microscopic Image Analysis with Applications in Biology", year = "2009", location = "Bethesda, MD, USA", url = "https://publications.utah.edu/publications/jurrus09/Jurrus_2009e.pdf", } @Article{SCI:Kno2009a, author = "A. Knoll and I. Wald and C.D. Hansen", title = "Coherent Multiresolution Isosurface Ray Tracing", journal = "The Visual Computer", volume = "25", number = "3", pages = "209--225", year = "2009", url = "https://publications.utah.edu/publications/knoll08/cohoctiso.pdf", } @Article{SCI:Kno2009b, author = "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald and H. Hagen", title = "Fast Ray Tracing of Arbitrary Implicit Surfaces with Interval and Affine Arithmetic", journal = "Computer Graphics Forum", volume = "28", number = "1", pages = "26--40", year = "2009", keywords = "rt, irt, interactive ray-tracing", url = "https://publications.utah.edu/publications/knoll09/CGF-implicits-2009.pdf", } @Article{SCI:Kno2009c, author = "A. Knoll and Y. Hijazi and R. Westerteiger and M. Schott and C.D. Hansen and H. Hagen", title = "Volume Ray Casting with Peak Finding and Differential Sampling", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1571--1578", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/knoll09/Knoll_avrc2009.pdf", } @Article{SCI:Kno2009d, author = "A. Knoll and Y. Hijazi and R. Westerteiger and M. Schott and C.D. Hansen and Hans Hagen", title = "Volume Ray Casting with Peak Finding and Differential Sampling", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "15", number = "6", pages = "1571-1578", year = "2009", url = "https://publications.utah.edu/publications/knoll09/Knoll_TVCG2009.pdf", } @InProceedings{SCI:Kru2009a, author = "J. Krüger and T. Fogal", title = "Focus and Context - Visualization without the Complexity", booktitle = "Proceedings of the World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany", volume = "25/13", pages = "44--48", year = "2009", series = "IFMBE Proceedings", publisher = "Springer Berlin Heidelberg", url = "https://publications.utah.edu/publications/Kru2009a/Fogal_IFMBE2009a.pdf", } @Article{SCI:Lew2009a, author = "S. Lew and C.H. Wolters and T. Dierkes and C. R{\"o}er and R.S. MacLeod", title = "Accuracy and run-time comparison for different potential approaches and iterative solvers in finite element method based EEG source analysis", journal = "Applied Numerical Mathematics", volume = "59", pages = "1970--1988", year = "2009", url = "https://publications.utah.edu/publications/lew09/Lew_ANM2009.pdf", } @Article{SCI:Lew2009b, author = "S. Lew and C.H. Wolters and A. Anwander and S. Makeig and R.S. MacLeod", title = "Improved EEG Source Analysis Using Low-Resolution Conductivity Estimation in a Four-Compartment Finite Element Head Model", journal = "Human Brain Mapping", volume = "30", pages = "2862--2878", year = "2009", keywords = "EEG, source analysis, realistic four-compartment head modeling, in vivo conductivity estimation, brain and skull conductivity, cerebrospinal fluid, simulated annealing, finite element method, somatosensory-evoked potentials, T1- and PD-weighted MRI", url = "https://publications.utah.edu/publications/lew09/Lew_HBM2009.pdf", } @Article{SCI:Li2009a, author = "J. Li and D. Xiu", title = "A Generalized Polynomial Chaos Based Ensemble Kalman Filter with High Accuracy", journal = "Journal of Computational Physics", volume = "228", number = "15", pages = "5454--5469", year = "2009", keywords = "Kalman filter, Data assimilation, Polynomial chaos, Uncertainty quantification", url = "https://publications.utah.edu/publications/li09/Li_JCP2009.pdf", } @InProceedings{SCI:Liu2009a, author = "Z. Liu and H. Zhu and B.L. Marks and L.M. Katz and C.B. Goodlett and G. Gerig and M. Styner", title = "Voxel-wise group analysis of {DTI}", booktitle = "Proceedings of the {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, 2009", pages = "807--810", year = "2009", url = "https://publications.utah.edu/publications/liu09/Liu_ISBI2009.pdf", } @TechReport{SCI:Lui2009a, author = "J. Luitjens and M. Berzins", title = "Uintah: A Scalable Adaptive Framework for Emerging Petascale Platforms", number = "UUSCI-2009-002", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-002.pdf", } @TechReport{SCI:Maa2009a, author = "S.A. Maas and B.J. Ellis and D.S. Rawlins and J.A. Weiss", title = "A Comparison of FEBio, ABAQUS, and NIKE3D Results for a Suite of Verification Problems", number = "UUSCI-2009-009", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", keywords = "mrl, MRL, FEBio, ABAQUS, NIKE3D", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-009.pdf", } @Article{SCI:Mac2009a, author = "R.S. MacLeod and J.G. Stinstra and S. Lew and R.T. Whitaker and D.J. Swenson and M.J. Cole and J. Krüger and D.H. Brooks and C.R. Johnson", title = "Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples", journal = "Philosophical Transactions of The Royal Society A, Mathematical, Physical & Engineering Sciences", volume = "367", number = "1896", pages = "2293--2310", year = "2009", url = "https://publications.utah.edu/publications/Mac2009a/MacLeod_TRSA2009.pdf", } @Article{SCI:Mak2009a, author = "C.B. Maks and C.R. Butson and B.L. Walter and J.L. Vitek and C.C. McIntyre", title = "Deep brain stimulation activation volumes and their association with neurophysiological mapping and therapeutic outcomes", journal = "Journal of Neurology, Neurosurgery, and Psychiatry", volume = "80", number = "6", pages = "659--666", year = "2009", month = "June", issn = "1468-330X", keywords = "Brain Mapping, Brain Mapping: methods, Cerebral,Cerebral: physiology, Computer-Assisted, Computer-Assisted: methods, Deep Brain Stimulation, Deep Brain Stimulation: methods, Diffusion Magnetic Resonance Imaging, Diffusion Magnetic Resonance Imaging: methods, Dominance, Electrodes, Humans, Image Processing, Imaging, Implanted, Magnetic Resonance Imaging, Magnetic Resonance Imaging: methods, Nerve Net, Nerve Net: physiopathology, Neurologic Examination, Neurons, Neurons: physiology, Parkinson Disease, Parkinson Disease: physiopathology, Parkinson Disease: therapy, Substantia Nigra, Substantia Nigra: physiopathology, Subthalamic Nucleus, Subthalamic Nucleus: physiopathology, Synaptic Transmission, Synaptic Transmission: physiology, Thalamus, Thalamus: physiopathology, Three-Dimensional, Tomography, Treatment Outcome, X-Ray Computed, X-Ray Computed: methods", url = "https://publications.utah.edu/publications/Mak2009a/Maks_JNNP2009.pdf", } @Article{SCI:Mar2009a, author = "H.G. Martinez and S.I. Prajapati and C.A. Estrada and F. Jimenez and M.P. Quinones and I. Wu and A. Bahadur and A. Sanderson and C.R. Johnson and M. Shim and C. Keller and S.S. Ahuja", title = "Microscopic Computed Tomography Based Virtual Histology for Visualization and Morphometry of Atherosclerosis in Diabetic Apolipoprotein E Mutant Mice", journal = "Circulation: Journal of the American Heart Association", volume = "120", number = "9", pages = "821--822", year = "2009", keywords = "virtual histology, diabetes, tomography, morphometry", url = "https://publications.utah.edu/publications/martinez09/Prajapati-etal-CIRCULATION.pdf", } @Article{SCI:Mar2009b, author = "H. Martinez and S. Prajapati and C. Estrada and F. Jimenez and I. Wu and A. Bahadur and A. Sanderson and C.R. Johnson and M. Shim and C. Keller and S. Ahuja", title = "Microscopic Computed Tomography–Based Virtual Histology for Visualization and Morphometry of Atherosclerosis in Diabetic Apolipoprotein E Mutant Mice", journal = "Circulation", volume = "120", number = "821--822", year = "2009", url = "https://publications.utah.edu/publications/martinez09/Martinez_Circulation2009.pdf", } @Article{SCI:Mar2009c, author = "Y. Marzouk and D. Xiu", title = "A Stochastic Collocation Approach to Bayesian Inference in Inverse Problems", journal = "Communications in Computational Physics", volume = "6", number = "4", pages = "826--847", year = "2009", keywords = "Inverse problems, Bayesian inference, stochastic collocation, generalized polynomial", url = "https://publications.utah.edu/publications/marzouk09/Marzouk_CiCP2009.pdf", } @Article{SCI:Mey2009a, author = "M.D. Meyer and T. Munzner and H. Pfister", title = "{MizBee}: A Multiscale Synteny Browser", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of {InfoVis} 2009)", volume = "15", number = "6", pages = "897--904", year = "2009", note = "Honorable Mention for Best Paper Award", url = "https://publications.utah.edu/publications/meyer09/Meyer_Mizbee2009.pdf", } @InProceedings{SCI:Mil2009a, author = "M. Milanic and V. Jazbinsek and D.F. Wang and J. Sinstra and R.S. Macleod and D.H. Brooks and R. Hren", title = "Evaluation of Approaches of Solving Electrocardiographic Imaging Problem", booktitle = "Proceeding of Computers in Cardiology 2010", year = "2009", month = "September", location = "Park City, Utah", url = "https://publications.utah.edu/publications/milanic09/Milanic_CinC2009.pdf", } @Article{SCI:Mio2009a, author = "S. Miocinovic and S.F. Lempka and G.S. Russo and C.B. Maks and C.R. Butson and K.E. Sakaie and J.L. Vitek and C.C. McIntyre", title = "Experimental and theoretical characterization of the voltage distribution generated by deep brain stimulation", journal = "Experimental Neurology", volume = "216", number = "1", pages = "166--176", year = "2009", publisher = "Elsevier Inc.", month = "March", issn = "1090--2430", url = "https://publications.utah.edu/publications/Mio2009a/Miocinovic_ExpNeurol2009.pdf", } @TechReport{SCI:Mir2009a, author = "H. Mirzaee and C. Eskilsson and S.J. Sherwin and R.M. Kirby", title = "Comparison of Consistent Integration Versus Adaptive Quadrature for Taming Aliasing Errors", number = "UUSCI-2009-008", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-008.pdf", } @Article{SCI:Moo2009a, author = "S.M. Moore and B.J. Ellis and J.A. Weiss and P.J. McMahon and R.E. Debski", title = "The Glenohumeral Capsule Should be Evaluated as a Sheet of Fibrous Tissue: A Validated Finite Element Model", journal = "Annals of Biomedical Engineering", volume = "38", number = "1", pages = "66--76", year = "2009", keywords = "mrl", url = "https://publications.utah.edu/publications/moore09/Moore_ABE_2009.pdf", } @Article{SCI:Mos2009a, author = "M.W. Mosconi and H. Cody-Hazlett and M.D. Poe and G. Gerig and R. Gimpel-Smith and J. Piven", title = "Longitudinal study of amygdala volume and joint attention in 2- to 4-year-old children with autism", journal = "Arch Gen Psychiatry", volume = "66", number = "5", pages = "509--516", year = "2009", url = "https://publications.utah.edu/publications/mosconi09/Mosconi_GenPsy2009.pdf", } @Article{SCI:Muk2009a, author = "N. Mukherjee and C. Kang and H.M. Wolfe and B.S. Hertzberg and J.K. Smith and W. Lin and G. Gerig and R.M. Hamer and J.H. Gilmore", title = "Discordance of Prenatal and Neonatal Brain Development in Twins", journal = "Early Human Development", volume = "85", number = "3", pages = "171--175", year = "2009", url = "https://publications.utah.edu/publications/mukherjee09/Mukherjee_EHD2009.pdf", } @InProceedings{SCI:Mul2009a, author = "H Müller and R Reihs and S Sauer and K Zatloukal and M Streit and A Lex and B Schlegl and D Schmalstieg", title = "Connecting Genes with Diseases", booktitle = "Information Visualisation, 2009 13th International Conference", pages = "323--330", year = "2009", month = "July", url = "https://publications.utah.edu/publications/Mul2009a/2009_ivbi_connecting-genes.pdf", } @Article{SCI:Oak2009a, author = "R.S. Oakes and T.J. Badger and E.G. Kholmovski and N. Akoum and N.S. Burgon and E.N. Fish and J.J. Blauer and S.N. Rao and E.V. DiBella and N.M. Segerson and M. Daccarett and J. Windfelder and C.J. McGann and D.L. Parker and R.S. MacLeod and N.F. Marrouche", title = "Detection and quantification of left atrial structural remodeling with delayed-enhancement magnetic resonance imaging in patients with atrial fibrillation", journal = "Circulation", volume = "119", number = "13", pages = "1758--1767", year = "2009", keywords = "cvrti", url = "https://publications.utah.edu/publications/oaks09/Oaks_Circ2009.pdf", } @Article{SCI:Ogu2009a, author = "I. Oguz and M. Niethammer and J. Cates and R.T. Whitaker and P.T. Fletcher and C. Vachet and M. Styner", title = "Cortical Correspondence with Probabilistic Fiber Connectivity", journal = "Information Processing in Medical Imaging (IPMI)", volume = "5636", pages = "651--663", year = "2009", series = "Lecture Notes in Computer Science (LCNS)", url = "https://publications.utah.edu/publications/oguz09/Oguz_IPMI2009.pdf", } @Article{SCI:Omb2009a, author = "L. Omberg and J.R. Meyerson and K. Kobayashi and L.S. Drury and J.F.X. Diffley and O. Alter", title = "Global Effects of DNA Replication and DNA Replication Origin Activity on Eukaryotic Gene Expression", title_url = "http://www.alterlab.org/verification_of_prediction/", journal = "Nature Molecular Systems Biology", volume = "5", number = "312", pages = "(published online)", year = "2009", month = "October", url = "https://publications.utah.edu/publications/omberg09/Omberg_msb200970.pdf", url = "https://publications.utah.edu/publications/omberg09/Omberg_msb200970-supp.pdf", } @Article{SCI:Pai2009a, author = "A.R.C. Paiva and I. Park and J.C. Principe", title = "A Reproducing Kernel Hilbert Space Framework for Spike Train Signal Processing", journal = "Neural Computation", volume = "21", number = "2", pages = "424--449", year = "2009", url = "https://publications.utah.edu/publications/paiva09/Paiva_2009a.pdf", } @Article{SCI:Pan2009a, author = "Y. Pan and R.T. Whitaker and A. Cheryauka and D. Ferguson", title = "Feasibility of GPU-Assisted Iterative Image Reconstruction for Mobile C-ARM CT", booktitle = "Proceedings of SPIE Medical Imaging 2009", journal = "Progress in biomedical optics and imaging", volume = "10", number = "3", year = "2009", issn = "1605-7422", url = "https://publications.utah.edu/publications/pan09/GPU_RECON_A4.pdf", } @InProceedings{SCI:Pan2009b, author = "Y. Pan and W.-K. Jeong and R.T. Whitaker", title = "Markov Surfaces: A Probabilistic Framework for User-Assisted Three Dimensional Image Segmentation", booktitle = "Proceedings of MICCAI 2009 workshop on Probabilistic Models for Medical Image Analysis", year = "2009", location = "London, UK", url = "https://publications.utah.edu/publications/pan09/Pan_MICCAI2009.pdf", } @InCollection{SCI:Par2009a, author = "S.G. Parker and K. Damevski and A. Khan and A. Swaminathan and C.R. Johnson", title = "The SCIJump Framework for Parallel and Distributed Scientific Computing", booktitle = "Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications", pages = "149--170", year = "2009", editor = "Manish Parashar and Xiaolin Li and Sumir Chandra", publisher = "Wiley-Blackwell", url = "https://publications.utah.edu/publications/Par2009a/Parker_SCIJump-chapter2011.pdf", } @Article{SCI:Peg2009a, author = "V. Pegoraro and S.G. Parker", title = "An Analytical Solution to Single Scattering in Homogeneous Participating Media", journal = "Computer Graphics Forum (Proceedings of the 30th Eurographics Conference)", volume = "28", number = "2", pages = "329--335", year = "2009", url = "https://publications.utah.edu/publications/pegoraro09/Pegoraro_CGF09.pdf", } @InProceedings{SCI:Peg2009b, author = "V. Pegoraro and M. Schott and S.G. Parker", title = "An Analytical Approach to Single Scattering for Anisotropic Media and Light Distributions", booktitle = "Proceedings of the 35th Graphics Interface Conference", pages = "71--77", year = "2009", url = "https://publications.utah.edu/publications/pegoraro09/Pegoraro_GIF09.pdf", } @Article{SCI:Pha2009a, author = "N.S. Phatak and S.A. Maas and A.I. Veress and N.A. Pack and E.V. DiBella and J.A. Weiss", title = "Strain Measurement in the Left Ventricle During Systole with Deformable Image Registration", journal = "Medical Image Analysi", volume = "13", number = "2", pages = "354--361", year = "2009", keywords = "mrl, cardiology", url = "https://publications.utah.edu/publications/phatak09/phatak_med_image_anal_2009.pdf", } @Article{SCI:Pot2009a, author = "K. Potter and A. Wilson and P.-T. Bremer and D. Williams and C. Doutriaux and V. Pascucci and C.R. Johhson", title = "Visualization of Uncertainty and Ensemble Data: Exploration of Climate Modeling and Weather Forecast Data with Integrated ViSUS-CDAT Systems", journal = "J. Phys.: Conf. Ser.", volume = "180", number = "012089", pages = "012089", year = "2009", publisher = "IOP Publishing", month = "July", url = "https://publications.utah.edu/publications/Pot2009a/Potter_SciDAC2009.pdf", } @InProceedings{SCI:Pot2009b, author = "K. Potter and A. Wilson and P.-T. Bremer and D. Williams and C. Doutriaux and V. Pascucci and C.R. Johnson", title = "Ensemble-Vis: A Framework for the Statistical Visualization of Ensemble Data", booktitle = "Proceedings of the 2009 {IEEE} International Conference on Data Mining Workshops", pages = "233--240", year = "2009", url = "https://publications.utah.edu/publications/potter09/potterICDM09.pdf", } @Article{SCI:Pra2009a, author = "M.W. Prastawa and E. Bullitt and G. Gerig", title = "Simulation of brain tumors in MR images for evaluation of segmentation efficacy", journal = "Med Image Anal", volume = "13", number = "2", pages = "297--311", year = "2009", url = "https://publications.utah.edu/publications/prastawa09/Prastawa_MIA2009.pdf", } @Article{SCI:Pre2009a, author = "J.S. Preston and T. Tasdizen and C.M. Terry and A.K. Cheung and R.M. Kirby", title = "Using the stochastic collocation method for the uncertainty quantification of drug concentration due to depot shape variability", journal = "IEEE Transactions on Biomedical Engineering", volume = "56", number = "3", pages = "609--620", year = "2009", note = "Epub 2008 Dec 2", url = "https://publications.utah.edu/publications/preston09/Preston_TBE2009.pdf", } @Article{SCI:Rai2009a, author = "E.J. Rainis and S.A. Maas and H.B. Henninger and P.J. McMahon and J.A. Weiss and R.E. Debski", title = "Material properties of the axillary pouch of the glenohumeral capsule: Is isotropic material symmetry appropriate?", journal = "Journal of Biomechanical Engineering", volume = "131", number = "13", pages = "(7 pages)", year = "2009", keywords = "mrl", url = "https://publications.utah.edu/publications/rainis09/Rainis_JBME2009.pdf", } @InProceedings{SCI:San2009a, author = "E. Santos and D. Koop and H.T. Vo and E. Anderson and J. Freire and C.T. Silva", title = "Using Workflow Medleys to Streamline Exploratory Tasks", booktitle = "21st International Conference on Scientific and Statistical Database Management (SSDBM)", pages = "292--301", year = "2009", url = "https://publications.utah.edu/publications/santos09/medleys-ssdbm2009.pdf", } @Article{SCI:San2009b, author = "E. Santos and L. Lins and J.P. Ahrens and J. Freire and C.T. Silva", title = "{VisMashup:} Streamlining the Creation of Custom Visualization Applications", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1539--1546", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/santos09/Santos_mashup-vis2009.pdf", } @Article{SCI:San2009c, author = "A.R. Sanderson and M.D. Meyer and R.M. Kirby and C.R. Johnson", title = "A Framework for Exploring Numerical Solutions of Advection Reaction Diffusion Equations using a GPU Based Approach", journal = "Journal of Computing and Visualization in Science", volume = "12", pages = "155--170", year = "2009", url = "https://publications.utah.edu/publications/sanderson09/Sanderson_CVS2009.pdf", } @Article{SCI:Sat2009a, author = "D. Sato and Y. Xie and J.N. Weiss and Z. Qu and A. Garfinkel and A.R. Sanderson", title = "Acceleration of Cardiac Tissue Simulation with Graphic Processing Units", journal = "Medical and Biological Engineering and Computing", year = "2009", note = "Published online Aug 5, 2009", url = "https://publications.utah.edu/publications/Sat2009a/Sato_MBEC2009.pdf", } @Article{SCI:Sch2009a, author = "M. Schott and V. Pegoraro and C.D. Hansen and K. Boulanger and K. Bouatouch", title = "A Directional Occlusion Shading Model for Interactive Direct Volume Rendering", journal = "Computer Graphics Forum", volume = "28", number = "3", pages = "855--862", year = "2009", publisher = "Wiley-Blackwell", month = "jun", url = "https://publications.utah.edu/publications/Sch2009a/EuroVis09DirectionalOcclusionShading.pdf", } @PhdThesis{SCI:Sch2009b, author = "J.M. Schreiner", title = "Uniform and Adaptive (Re)meshing of Surfaces", year = "2009", school = "School of Computing, University of Utah", month = "June", note = "Ph.D. Thesis", keywords = "meshing, mesh generation", url = "https://publications.utah.edu/publications/schreiner09/JohnSchreiner_dissertation.pdf", } @Article{SCI:Seg2009a, author = "N.M. Segerson and M. Daccarett and T.J. Badger and A. Shabaan and N. Akoum and E.N. Fish and S. Rao and N.S. Burgon and Y. Adjei-Poku and E.G. Kholmovski and S. Vijayakumar and E.V.R. Dibella and R.S. Macleod and N.F. Marrouche", title = "Magnetic Resonance Imaging-Confirmed Ablative Debulking of the Left Atrial Posterior Wall and Septum for Treatment of Persistent Atrial Fibrillation: Rationale and Initial Experience", journal = "Journal of Cardiovascular Electrophysiology", volume = "21", number = "2", pages = "126--132", year = "2009", keywords = "atrial fibrillation, radiofrequency ablation, debulking, magnetic resonance imaging, delayed enhancement, complex fractionated electrograms", url = "https://publications.utah.edu/publications/segerson09/Segerson_JCEP2009.pdf", } @Article{SCI:She2009a, author = "J.F. Shepherd and C.R. Johnson", title = "Hexahedral Mesh Generation for Biomedical Models in SCIRun", journal = "Engineering with Computers", volume = "25", number = "1", pages = "97--114", year = "2009", url = "https://publications.utah.edu/publications/shepherd09/Shepherd_EngComp2009.pdf", } @Article{SCI:Shi2009a, author = "F. Shi and P.T. Yap and Y. Fan and J.Z. Cheng and L.L. Wald and G. Gerig and W. Lin and D. Shen", title = "Cortical Enhanced Tissue Segmentation of Neonatal Brain MR Images Acquired by a Dedicated Phased Array Coil", journal = "Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition", pages = "39--45", year = "2009", url = "https://publications.utah.edu/publications/shi09/Shi_nihms188810.pdf", } @PhdThesis{SCI:Ste2009a, author = "M. Steffen", title = "Analysis-Guided Improvements of the Material Point Method", year = "2009", school = "School of Computing, University of Utah", url = "https://publications.utah.edu/publications/Ste2009a/Steffen_PhDThesis2009.pdf", } @InProceedings{SCI:Str2009a, author = "M. Streit and A. Lex and H. Müller and D. Schmalstieg", title = "Gaze-Based Focus Adaption in an Information Visualization System", booktitle = "Proceedings of the Conference on Computer Graphics and Visualization and Image Processing (CGVCVIP '09)", year = "2009", url = "https://publications.utah.edu/publications/Str2009a/2009_cgvcvip_gaze-based.pdf", } @Article{SCI:Str2009b, author = "M. Streit and A. Lex and M. Kalkusch and K. Zatloukal and D. Schmalstieg", title = "Caleydo: Connecting Pathways with Gene Expression", journal = "Bioinformatics", volume = "25", number = "20", pages = "2760--2761", year = "2009", url = "https://publications.utah.edu/publications/Str2009b/Bioinformatics-2009-Streit-2760-1.pdf", } @InCollection{SCI:Tao2009a, author = "R. Tao and P.T. Fletcher and R.T. Whitaker", title = "A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI", booktitle = "Lecture Notes in Computer Science", pages = "664--675", year = "2009", publisher = "Springer", url = "https://publications.utah.edu/publications/Tao2009a/Tao_IPMI2009t.pdf", } @Article{SCI:Tas2009a, author = "T. Tasdizen", title = "Principal neighborhood dictionaries for nonlocal means image denoising", journal = "IEEE Transactions on Image Processing", volume = "18", number = "12", pages = "2649--2660", year = "2009", note = "Epub 2009 Jul 24", url = "https://publications.utah.edu/publications/tasdizen09/Tasdizen_IP2009.pdf", } @Article{SCI:Tat2009a, author = "J.D. Tate and J.G. Stinstra and T. Pilcher and and R.S. MacLeod", title = "Measuring Implantable Cardioverter Defibrillators {(ICDs)} During Implantation Surgery: Verification of a Simulation", journal = "Computers in Cardiology", pages = "473--476", year = "2009", issn = "0276-6547", url = "https://publications.utah.edu/publications/tate09/Tate_CinC2009.pdf", } @Article{SCI:Tie2009a, author = "J. Tierny and A. Gyulassy and E. Simon and V. Pascucci", title = "Loop Surgery for Volumetric Meshes: Reeb Graphs Reduced to Contour Trees", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1177--1184", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/tierny2009/loop-surgery.pdf", } @Article{SCI:Tra2009a, author = "L.T. Tran and J. Kim and M. Berzins", title = "Solving Time-Dependent PDEs using the Material Point Method, A Case Study from Gas Dynamics", journal = "International Journal for Numerical Methods in Fluids", volume = "62", number = "7", pages = "709--732", year = "2009", url = "https://publications.utah.edu/publications/tran09/Tran_IJNMF2009.pdf", } @InProceedings{SCI:Uv2009a, author = "Kannan U.V. and A.R.C. Paiva and E. Jurrus and T. Tasdizen", title = "Automatic Markup of Neural Cell Membranes Using Boosted Decision Stumps", booktitle = "Proceedings of the {IEEE} International Symposium on Biomedical Engineering ({ISBI} 2009)", pages = "1039--1042", year = "2009", location = "Boston, MA", keywords = "crcns, neural networks", url = "https://publications.utah.edu/publications/uv09/KannanUV_ISBI2009.pdf", } @InProceedings{SCI:Uv2009b, author = "Kannan UV and M. Kim and D. Gerszewski and J.R. Anderson and M. Hall", title = "Assembling Large Mosaics of Electron Microscope Images using GPU", booktitle = "Proceedings of the 2009 Symposium on Application Accelerators in High Performance Computing (SAAHPC'09)", year = "2009", keywords = "crcns, electron microscopy, mosaics, retina, eye", url = "https://publications.utah.edu/publications/kannanuv09/Venkataraju_SAAHPC09.pdf", } @InProceedings{SCI:Vo2009a, author = "A. Vo and S. Vakkalanka and M. Delisi and G. Gopalakrishnan and R.M. Kirby and R. Thakur", title = "Formal Verification of Practical MPI Programs", booktitle = "Proceedings of 14th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP)", pages = "261--270", year = "2009", month = "February 14-18", location = "Raleigh, NC", url = "https://publications.utah.edu/publications/vo09/Vo_ACM-SIGPLAN_PPoPP2009.pdf", } @TechReport{SCI:Vo2009b, author = "H.T. Vo and D.K. Osmari and B. Summa and J.L.D. Comba and V. Pascucci and C.T. Silva", title = "Parallel Dataflow Scheme for Streaming (Un)Structured Data", number = "UUSCI-2009-004", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-004.pdf", } @TechReport{SCI:Vo2009c, author = "H.T. Vo and C.T. Silva", title = "Multi-Threaded Streaming Pipeline For VTK", number = "UUSCI-2009-005", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-005.pdf", } @Article{SCI:Wal2009a, author = "I. Wald and W.R. Mark and J. G{\"u}nther and S. Boulos and T. Ize and W. Hunt and S.G. Parker and P. Shirley", title = "State of the Art in Ray Tracing Animated Scenes", journal = "Computer Graphics Forum", volume = "28", number = "6", pages = "1691--1722", year = "2009", url = "https://publications.utah.edu/publications/Wal2009a/Wald_CGF2009.pdf", } @InProceedings{SCI:Wal2009b, author = "M. Waldner and A. Lex and M. Streit and D. Schmalstieg", title = "Design Considerations for Collaborative Information Workspaces in Multi-Display Environments", booktitle = "Proceedings of the Workshop on Collaborative Visualization on Interactive Surfaces (VisWeek '09)", pages = "36--39", year = "2009", issn = "1862-5207", url = "https://publications.utah.edu/publications/Wal2009b/2009_covis_design-considerations.pdf", } @TechReport{SCI:Wan2009a, author = "Y. Wan and H. Otsuna and C.-B. Chien and C.D. Hansen", title = "An Interactive Visualization Tool for Multi-channel Confocal Microscopy Data in Neurobiology Research", number = "UUSCI-2009-001", year = "2009", institution = "SCI Institute, University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2009-001.pdf", } @Article{SCI:Wan2009b, author = "Y. Wan and H. Otsuna and C.-B. Chien and C.D. Hansen", title = "An Interactive Visualization Tool for Multi-Channel Confocal Microscopy Data in Neurobiology Research", journal = "{IEEE} Transactions on Visualization and Computer Graphics, Proceedings of the 2009 {IEEE} Visualization Conference", volume = "15", number = "6", pages = "1489--1496", year = "2009", month = "Sept/Oct", url = "https://publications.utah.edu/publications/wan09/Wan_confocal2009.pdf", } @InProceedings{SCI:Wan2009c, author = "D.F. Wang and R.M. Kirby and C.R. Johnson", title = "Finite Element Discretization Strategies for the Inverse Electrocardiographic (ECG) Problem", booktitle = "Proceedings of the 11th World Congress on Medical Physics and Biomedical Engineering", volume = "25/2", pages = "729-732", year = "2009", month = "September", location = "Munich, Germany", keywords = "inverse ecg, cardiology, heart", url = "https://publications.utah.edu/publications/wang09/Wang_MPBE2009.pdf", } @InProceedings{SCI:Wan2009d, author = "D.F. Wang and R.M. Kirby and C.R. Johnson", title = "Finite Element Refinements for Inverse Electrocardiography: Hybrid-Shaped Elements, High-Order Element Truncation and Variational Gradient Operator", booktitle = "Proceeding of Computers in Cardiology 2009", year = "2009", month = "September", location = "Park City", keywords = "finite element modeling, inverse ecg", url = "https://publications.utah.edu/publications/wang09/Wang_CinC2009.pdf", } @Article{SCI:Wan2009e, author = "Y. Wang and A.R.C. Paiva and J.C. Principe and J.C. Sanchez", title = "Sequential Monte Carlo Point Process Estimation of Kinematics from Neural Spiking Activity for Brain Machine Interfaces", journal = "Neural Computation", volume = "21", number = "10", pages = "2894--2930", year = "2009", url = "https://publications.utah.edu/publications/wang09/Wang_2009b.pdf", } @Article{SCI:Xiu2009a, author = "D. Xiu and J. Shen", title = "Efficient Stochastic Galerkin Methods for Random Diffusion Equations", journal = "Journal of Computational Physics", volume = "228", number = "2", pages = "266--281", year = "2009", keywords = "Generalized polynomial chaos, Stochastic Galerkin, Random diffusion, Uncertainty quantification", url = "https://publications.utah.edu/publications/xiu09/Xiu_JCP2009.pdf", } @Article{SCI:Xiu2009b, author = "D. Xiu", title = "Fast Numerical Methods for Stochastic Computations: a Review", journal = "Communications in Computational Physics", volume = "5", number = "2-4", pages = "242--272", year = "2009", keywords = "Stochastic differential equations, generalized polynomial chaos, uncertainty quantification, spectral methods", url = "https://publications.utah.edu/publications/xiu09/Xiu_CiCP2009.pdf", } @Article{SCI:Zha2009a, author = "F. Zhang and E.R. Hancock and C. Goodlett and G. Gerig", title = "Probabilistic White Matter Fiber Tracking using, Particle Filtering and von Mises-Fisher Sampling", journal = "Medical Image Analysis", volume = "13", number = "1", pages = "5--18", year = "2009", url = "https://publications.utah.edu/publications/zhang09/Zhang_MIA2009.pdf", } @InProceedings{SCI:Adl2008a, author = "G. Adluru and E.V.R. DiBella and C.J. McGann", title = "Data Acquisition and Reconstruction of Undersampled Radial MR Myocardial Perfusion", booktitle = "Proceedings of the 11th Annual Scientific Sessions of the Society for Cardiovascular Magnetic Resonance (SCMR) 2008", pages = "215", year = "2008", url = "https://publications.utah.edu/publications/adluru08/Adluru_SCMR_08.pdf", } @InProceedings{SCI:Adl2008b, author = "G. Adluru and E.V.R. DiBella", title = "A Comparison of {L1} and {L2} Norms as Temporal Constraints for Reconstruction of Undersampled Dynamic Contrast Enhanced Cardiac Scans with Respiratory Motion", booktitle = "Proceedings of the 16th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine ({ISMRM}) 2008", pages = "340", year = "2008", url = "https://publications.utah.edu/publications/adluru08/Adluru_ISMRM_08_a.pdf", } @InProceedings{SCI:Adl2008c, author = "G. Adluru and E.V.R. DiBella", title = "Data Reordering for Improved Constrained Reconstruction from Undersampled k-space Data", booktitle = "Proceedings of the 16th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine ({ISMRM}) 2008", pages = "3153", year = "2008", url = "https://publications.utah.edu/publications/adluru08/Adluru_ISMRM_08_b.pdf", } @Article{SCI:And2008a, author = "A.E. Anderson and B.J. Ellis and C.L. Peters and J.A. Weiss", title = "Cartilage Thickness: Factors Influencing Multidetector CT Measurements in a Phantom Study", journal = "Radiology", volume = "246", number = "1", pages = "133-141", year = "2008", keywords = "bioengineering, MRL", url = "https://publications.utah.edu/publications/anderson08/Anderson_Radiology_2008.pdf", } @Article{SCI:And2008b, author = "A.E. Anderson and B.J. Ellis and S.A. Maas and C.L. Peters and J.A. Weiss", title = "Validation of Finite Element Predictions of Cartilage Contact Pressure in the Human Hip Joint", journal = "ASME Journal of Biomechanical Engineering", volume = "130", number = "3", pages = "051008-1--10", year = "2008", month = "May", keywords = "bioengineering, MRL", url = "https://publications.utah.edu/publications/anderson08/anderson_jbme_2008.pdf", } @Article{SCI:And2008c, author = "E.W. Anderson and J. Ahrens and K. Heitmann and S. Habib and C.T. Silva", title = "Provenance in Comparative Analysis: A Study in Cosmology", journal = "Computing in Science and Engineering", volume = "10", number = "3", pages = "30--37", year = "2008", keywords = "astronomy, cosmology, astrophysics, big bang, vistrails, workflows, provenance", url = "https://publications.utah.edu/publications/anderson08/cise2008c.pdf", } @Article{SCI:And2008d, author = "A.E. Anderson and B.J. Ellis and C.L. Peters and J.A. Weiss", title = "Factors Influencing Cartilage Thickness Measurements with Multi-Detector CT: A Phantom Study", journal = "Radiology", volume = "246", number = "1", pages = "144-141", year = "2008", keywords = "mrl", } @Article{SCI:Bap2008a, author = "A. Baptista and B. Howe and J. Freire and D. Maier and C.T. Silva", title = "Scientific Exploration in the Era of Ocean Observatories", journal = "Computing in Science and Engineering", volume = "10", number = "3", pages = "53--58", year = "2008", keywords = "oceanography, vistrails, provenance", url = "https://publications.utah.edu/publications/baptista08/cise2008b.pdf", } @Article{SCI:Bav2008a, author = "L. Bavoil and S.P. Callahan and and C.T. Silva", title = "Robust Soft Shadow Mapping with Depth Peeling", journal = "Journal of Graphics Tools", volume = "13", number = "1", pages = "19--30", year = "2008", url = "https://publications.utah.edu/publications/bavoil08/jgt08.pdf", } @InCollection{SCI:Bet2008a, author = "E.W. Bethel and H. Childs and A. Mascarenhas and V. Pascucci and Prabhat", title = "Scientific Data Management Challenges in High Performance Visual Data Analysis", booktitle = "Scientific Data Management: Challenges, Existing Technology, and Deployment", year = "2008", publisher = "Chapman Hall/CRC Press", keywords = "vacet, data management", } @InProceedings{SCI:Bra2008a, author = "D. Brayford and M. Turner and W.T. Hewitt", title = "A Physical Model for the Polarized Scattering of Light", booktitle = "Proceedings of The sixth Theory and Practice of Computer Graphics 2008 Conference ({TPCG08})", year = "2008", month = "June", location = "University of Manchester, UK", note = "Best Paper Award", url = "https://publications.utah.edu/publications/brayford08/eg_uk_DavidBrayford.pdf", } @InProceedings{SCI:Bue2008a, author = "K. Buerger and P. Kondratieva and J. Krüger and R. Westermann", title = "Importance-Driven Particle Techniques for Flow Visualization", booktitle = "Proceedings of {IEEE} {VGTC} PacificVis 2008", pages = "71--78", year = "2008", keywords = "particle systems, flow visualization, vacet", url = "https://publications.utah.edu/publications/Bue2008a/pvis08.pdf", } @Article{SCI:But2008a, author = "C.R. Butson and G.A. Clark", title = "Mechanisms of noise-induced improvement in light-intensity encoding in Hermissenda photoreceptor network", journal = "Journal of Neurophysiology", volume = "99", number = "1", pages = "155--165", year = "2008", month = "January", issn = "0022-3077", keywords = "Action Potentials, Action Potentials: physiology, Animals, Artifacts, Computer Simulation, Eye, Eye: cytology, Hermissenda, Hermissenda: physiology, Invertebrate, Invertebrate: physiology, Nerve Net, Nerve Net: physiology, Neurons, Neurons: physiology, Ocular, Ocular Physiological Phenomena, Ocular: physiology, Photic Stimulation, Photoreceptor Cells, Reaction Time, Reaction Time: physiology, Sensory Thresholds, Sensory Thresholds: physiology, Synaptic Transmission, Synaptic Transmission: physiology, Vision", url = "https://publications.utah.edu/publications/But2008a/Butson_JNeurophys2007b.pdf", } @Article{SCI:But2008b, author = "C.R. Butson and G.A. Clark", title = "Random noise paradoxically improves light-intensity encoding in Hermissenda photoreceptor network", journal = "Journal of Neurophysiology", volume = "99", number = "1", pages = "146--154", year = "2008", month = "January", issn = "0022-3077", keywords = "Action Potentials, Action Potentials: physiology, Animals, Artifacts, Computer Simulation, Eye, Eye: cytology, Hermissenda, Hermissenda: physiology, Invertebrate, Invertebrate: physiology, Nerve Net, Nerve Net: physiology, Neurons, Neurons: physiology, Ocular, Ocular Physiological Phenomena, Ocular: physiology, Photic Stimulation, Photoreceptor Cells, Reaction Time, Reaction Time: physiology, Sensory Thresholds, Sensory Thresholds: physiology, Synaptic Transmission, Synaptic Transmission: physiology, Vision", url = "https://publications.utah.edu/publications/But2008b/Butson_JNeurophys2007a.pdf", } @Article{SCI:But2008c, author = "C.R. Butson and C.C. McIntyre", title = "Current Steering to Control the Volume of Tissue Activated During Deep Brain Stimulation", journal = "Brain Stimulation", volume = "1", number = "1", pages = "7--15", year = "2008", month = "January", url = "https://publications.utah.edu/publications/But2008c/Butson_BrainStim2008.pdf", } @Article{SCI:Cal2008a, author = "S.P. Callahan and J.H. Callahan and C.E. Scheidegger and C.T. Silva", title = "Direct Volume Rendering: A 3D Plotting Technique for Scientific Data", journal = "Computing in Science and Engineering", volume = "10", number = "1", pages = "88--92", year = "2008", url = "https://publications.utah.edu/publications/callahan08/cise08.pdf", } @TechReport{SCI:Cal2008b, author = "S.P. Callahan", title = "Adaptive Visualization of Dynamic Unstructured Meshes", number = "UUSCI-2008-003", year = "2008", institution = "University of Utah School of Computing", type = "SCI Technical Report", note = "Ph.D. Thesis", keywords = "meshing, ph.d. thesis", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-003.pdf", } @TechReport{SCI:Cal2008c, author = "S.P. Callahan and C.T. Silva", title = "Image-Space Acceleration for Direct Volume Rendering of Unstructured Grids using Joint Bilateral Upsampling", number = "UUSCI-2008-002", year = "2008", institution = "University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-002.pdf", } @InProceedings{SCI:Cal2008d, author = "S.P. Callahan and J. Freire and C.E. Scheidegger and C.T. Silva and and H.T. Vo", title = "Towards a Provenance-Enabling ParaView", booktitle = "Proceedings of the Second International Provenance and Annotation Workshop ({IPAW} 2008)", pages = "120--127", year = "2008", keywords = "vistrails, provenance, workflow management", url = "https://publications.utah.edu/publications/callahan08/ipaw08.pdf", } @InProceedings{SCI:Cat2008a, author = "J. Cates and P.T. Fletcher and Z. Warnock and R.T. Whitaker", title = "A Shape Analysis Framework for Small Animal Phenotyping with Application to Mice with a Targeted Disruption of Hoxd11", booktitle = "Proceedings of the 5th IEEE International Symposium on Biomedical Imaging (ISBI '08)", pages = "512--516", year = "2008", keywords = "phenotyping, genetic mutation analysis", url = "https://publications.utah.edu/publications/cates98/Cates_ISBI08.pdf", } @InProceedings{SCI:Cat2008b, author = "J. Cates and P.T. Fletcher and M. Styner and H. Hazlett and R.T. Whitaker", title = "Particle-Based Shape Analysis of Multi-Object Complexes", booktitle = "Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI '08)", pages = "477--485", year = "2008", series = "Lecture Notes In Computer Science (LCNS)", isbn = "978-3-540-85987-1", url = "https://publications.utah.edu/publications/cates08/CatesMICCAI08.pdf", } @Article{SCI:Cho2008a, author = "A.N.M. Imroz Choudhury and K. Potter and S.G. Parker", title = "Interactive Visualization for Memory Reference Traces", booktitle = "Proceedings of EuroVis 2008", journal = "Computer Graphics Forum", volume = "27", number = "3", pages = "815--822", year = "2008", month = "May", url = "https://publications.utah.edu/publications/choudhury08/reftrace-vis.eurovis08.pdf", } @Article{SCI:Dan2008a, author = "J.D. Daniels and T. Ochotta and L. Ha and C.T. Silva", title = "Spline-Based Feature Curves from Point-Sampled Geometry", journal = "The Visual Computer", volume = "24", number = "6", pages = "449--462", year = "2008", } @Article{SCI:Dan2008b, author = "J.D. Daniels and C.T. Silva and J. Shepherd and E. Cohen", title = "Quadrilateral Mesh Simplification", journal = "{ACM} Transactions on Graphics - Proceedings of ACM SIGGRAPH Asia 2008", volume = "27", number = "5", year = "2008", url = "https://publications.utah.edu/publications/daniels08/siggraph-asia2008.pdf", } @InProceedings{SCI:Dav2008b, author = "S.B. Davidson and J. Freire", title = "Provenance and Scientific Workflows: Challenges and Opportunities", booktitle = "Proceedings of the 2008 ACM SIGMOD International Conference on Management of Data", pages = "1345--1350", year = "2008", isbn = "978-1-60558-102-6", keywords = "provenance, workflows, workflow management, vistrails", url = "https://publications.utah.edu/publications/davidson08/Davidson_SIGMOD08a.pdf", } @Article{SCI:Die2008b, author = "C. Dietrich and J. Comba and L. Nedel and C.E. Scheidegger and C.T. Silva", title = "Edge Groups: A New Approach to Understanding the Mesh Quality of Marching Methods", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of {IEEE} Visualization 2008)", volume = "14", number = "6", pages = "1651 - 1666", year = "2008", url = "https://publications.utah.edu/publications/dietrich08/vis2008b.pdf", } @Article{SCI:Dra2008a, author = "G. Draper and R. Riesenfeld", title = "Who Votes For What? A Visual Query Language for Opinion Data", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "14", number = "6", pages = "1197--1204", year = "2008", publisher = "IEEE", month = "Nov", url = "https://publications.utah.edu/publications/Dra2008a/Draper_infovis2008.pdf", } @InProceedings{SCI:Dra2008b, author = "G. Draper and Y. Livnat and R. Riesenfeld", title = "A Visual Query Language for Correlation Discovery and Management", booktitle = "Proceedings of Visual and Iconic Language Conference (VaIL 2008)", pages = "14--23", year = "2008", url = "https://publications.utah.edu/publications/draper08/Draper_vail2008.pdf", } @InProceedings{SCI:Ell2008a, author = "T. Ellkvist and D. Koop and E.W. Anderson and J. Freire and C.T. Silva", title = "Using Provenance to Support Real-Time Collaborative Design of Workflows", booktitle = "Proceedings of the Second International Provenance and Annotation Workshop ({IPAW} 2008)", pages = "266--279", year = "2008", keywords = "vistrails, provenance, workflow management, collaborative workflow design", url = "https://publications.utah.edu/publications/ellkvist08/ipaw2008c.pdf", } @InProceedings{SCI:Ell2008b, author = "T. Ellkvist and D. Koop and J. Freire and C.T. Silva and L. Stromback", title = "Using Mediation to Achieve Provenance Interoperability", booktitle = "Proceedings of the 2008 Fourth {IEEE} International Conference on eScience", pages = "398--399", year = "2008", keywords = "vistrails, provenance, workflows, workflow management", } @InProceedings{SCI:Fed2008a, author = "A. Fedorov and E. Billet and M.W. Prastawa and G. Gerig and A. Radmanesh and S.K. Warfield and R. Kikinis and N. Chrisochoides", title = "Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures", booktitle = "Lecture Notes in Computer Science", volume = "5358", pages = "594--603", year = "2008", publisher = "Springer", url = "https://publications.utah.edu/publications/fedorov08/Fedorov_LCNS2008a.pdf", } @InProceedings{SCI:Fle2008a, author = "P.T. Fletcher and S. Venkatasubramanian and S. Joshi", title = "Robust Statistics on Riemannian Manifolds via the Geometric Median", booktitle = "{IEEE} Conference on Computer Vision and Pattern Recognition ({CVPR} 2008)", pages = "1--8", year = "2008", url = "https://publications.utah.edu/publications/fletcher08/Fletcher_CVPR2008.pdf", } @Article{SCI:Fos2008a, author = "N.L. Foster and A.Y. Wang and T. Tasdizen and P.T. Fletcher and J.M. Hoffman and R.A. Koeppe", title = "Realizing the Potential of Positron Emission Tomography with 18F-Fluorodeoxyglucose to Improve the Treatment of Alzheimer", journal = "Journal of the Alzheimer", volume = "4", number = "1, Suppl. 1", pages = "S29--36", year = "2008", keywords = "PET, alzheimers", } @Article{SCI:Fos2008b, author = "N. L. Foster and A.Y. Wang and T. Tasdizen and K. Chen and W. Jagust and R.A. Koeppe and E. Reiman and M.W. Weiner and S. Minoshima", title = "Cerebral Hypometabolism Suggesting Frototemporal Dementia in an Alzheimer’s Disease Clinical Trial", journal = "Neurology", volume = "70", number = "11", pages = "A103", year = "2008", } @InProceedings{SCI:Fre2008a, author = "J. Freire and C.T. Silva", title = "Towards Enabling Social Analysis of Scientific Data", booktitle = "Proceedings of CHI Social Data Analysis Workshop 2008", year = "2008", url = "https://publications.utah.edu/publications/Fre2008a/chi2008.pdf", } @Article{SCI:Fre2008b, author = "J. Freire and D. Koop and C.T. Silva", title = "Provenance for Computational Tasks: A Survey", journal = "Computing in Science and Engineering", volume = "10", number = "3", pages = "11--21", year = "2008", keywords = "vistrails, provenance, workflow management", url = "https://publications.utah.edu/publications/freire08/cise2008a.pdf", } @InProceedings{SCI:Fuc2008a, author = "M. Fuchs and S. Gerber", title = "Variational Shape Detection in Microscope Images Based on Joint Shape and Image Feature Statistics", booktitle = "Proceedings of the {IEEE} Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis ({MMBIA} 2008)", pages = "1--8", year = "2008", url = "https://publications.utah.edu/publications/fuchs08/Fuchs_MMBIA08.pdf", } @Article{SCI:Gao2008a, author = "W. Gao and Y. Chen and G. Gerig and J.K. Smith and V. Jewells and J.H. Gilmore and W. Lin", title = "Temporal and Spatial Development of Axonal Maturation and Myelination of White Matter in the Developing Brain", journal = "American Journal of Neuroradiology", pages = "(published online)", year = "2008", month = "Nov 11", keywords = "ucnia", } @Article{SCI:Gen2008a, author = "S.E. Geneser and R.M. Kirby and R.S. MacLeod", title = "Application of Stochastic Finite Element Methods to Study the Sensitivity of ECG Forward Modeling to Organ Conductivity", journal = "{IEEE} Transations on Biomedical Engineering", volume = "55", number = "1", pages = "31--40", year = "2008", month = "January", url = "https://publications.utah.edu/publications/geneser08/geneser08-ieee-bme.pdf", } @Article{SCI:Gil2008a, author = "J.H. Gilmore and L. Smith and H. Wolfe and B. Hertzberg and J.K. Smith and N. Chescheir and D. Evans and C. Kang and R.M. Hamer and W. Lin and G. Gerig", title = "Prenatal Mild Ventriculomegaly Predicts Abnormal Development of the Neonatal Brain", journal = "Biological Psychiatry", volume = "64", number = "12", pages = "1069-1076", year = "2008", month = "Dec", keywords = "brain development, ventriculomegaly, ucnia", url = "https://publications.utah.edu/publications/gilmore08/Prenatal_Ventriculomegaly.pdf", } @InCollection{SCI:Goo2008a, author = "C. Goodlett and P.T. Fletcher and J. Gilmore and G. Gerig", title = "Group Statistics of DTI Fiber Bundles Using Spatial Functions of Tensor Measures", booktitle = "Medical Image Computing and Computer-Assisted Intervention (MICCAI 2008)", pages = "1068--1075", year = "2008", publisher = "Springer Verlag", keywords = "ucnia", url = "https://publications.utah.edu/publications/Goo2008a/tractstats.pdf", } @InProceedings{SCI:Goo2008c, author = "C.E. Goodyer and J. Wood and M. Berzins", title = "Mathematical modeling of chemical diffusion through skin using Grid-based {PSEs}", booktitle = "Modeling, Simulation and Optimization of Complex Processes: Proceedings of the Third International Conference on High Performance Scientific Computing", pages = "249--258", year = "2008", editor = "H.G. Bock and E. Kostina and H.X. Phu and R. Rannacher", publisher = "Springer", url = "https://publications.utah.edu/publications/goodyer08/Goodyer_SkinDiffusion2008.pdf", } @Article{SCI:Got2008a, author = "D. Gottlieb and D. Xiu", title = "Galerkin Method for Wave Equations with Uncertain Coefficients", journal = "Communications in Computational Physics", volume = "3", number = "2", pages = "505--518", year = "2008", keywords = "Generalized polynomial chaos, stochastic PDE, Galerkin method, hyperbolic equation, uncertainty quantification", url = "https://publications.utah.edu/publications/gottlieb08/GottliebXiu_CiCP2008.pdf", } @InProceedings{SCI:Gou2008a, author = "S. Gouttard and M. Styner and M.W. Prastawa and J. Piven and G. Gerig", title = "Assessment of Reliability of Multi-site Neuroimaging via Traveling Phantom Study", booktitle = "Proceedings of Medical Image Computing and Computer Assisted Intervention 2008, Lecture Notes in Computer Science LNCS", volume = "5242", pages = "263--270", year = "2008", month = "September", keywords = "ucnia", url = "https://publications.utah.edu/publications/gouttard08/Gouttard-MICCAI08.pdf", } @Article{SCI:Gri2008a, author = "C. Gribble and C. Brownlee and S.G. Parker", title = "Practical Global Illumination for Interactive Particle Visualization", journal = "Computers and Graphics", volume = "32", number = "1", pages = "14--24", year = "2008", month = "February", keywords = "Interactive particle visualization, Global illumination, Ray tracing", url = "https://publications.utah.edu/publications/Gri2008a/Gribble_CG2008.pdf", } @Article{SCI:Ham2008a, author = "C.W. Hamman and J.C. Klewicki and R.M. Kirby", title = "On the Lamb Vector Divergence in Navier-Stokes Flows", journal = "Journal of Fluid Mechanics", volume = "610", pages = "261--284", year = "2008", keywords = "navier-stokes, flow visualization, computational fluid dynamics, cfd", } @PhdThesis{SCI:Har2008a, author = "D.E. Hart", title = "Adjoint Error Estimation for Elastohydrodynamic Lubrication", year = "2008", school = "School of Computing, University of Leeds", month = "January", note = "Advisor: Martin Berzins", url = "https://publications.utah.edu/publications/Har2008a/Hart_PhDThesis2008.pdf", } @Article{SCI:Hes2008a, author = "J.S. Hesthaven and R.M. Kirby", title = "Filtering in Legendre Spectral Methods", journal = "Mathematics of Computation", volume = "77", number = "263", pages = "1425--1452", year = "2008", url = "https://publications.utah.edu/publications/hesthaven08/Hesthaven_FiltLegendreSpecMeth.pdf", } @TechReport{SCI:Hij2008a, author = "Y. Hijazi and A. Knoll and M. Schott and A. Kensler and C.D. Hansen and H. Hagen", title = "CSG Operations of Arbitrary Primitives with Interval Arithmetic and Real-Time Ray Tracing", number = "UUSCI-2008-008", year = "2008", institution = "University of Utah School of Computing", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-008.pdf", } @InProceedings{SCI:How2008a, author = "B. Howe and P. Lawson and R. Bellinger and J. Freire and E. Anderson and E. Santos and C.E. Scheidegger and A. Baptista and C.T. Silva", title = "End-to-End eScience: Integrating Workflow, Query, Visualization, and Provenance at an Ocean Observatory", booktitle = "Proceedings of the 2008 Fourth {IEEE} International Conference on eScience", pages = "127--134", year = "2008", keywords = "vistrails, provenance, workflows, workflow management", url = "https://publications.utah.edu/publications/howe08/vistrails-escience2008.pdf", } @InProceedings{SCI:Ize2008a, author = "T. Ize and I. Wald and S.G. Parker", title = "Ray Tracing with the {BSP} Tree", booktitle = "Proceedings of the {IEEE} Symposium on Interactive Ray Tracing, 2008", pages = "159--166", year = "2008", keywords = "rt, ray tracing, bsp tree", url = "https://publications.utah.edu/publications/ize08/BSP_RT08.pdf", } @Article{SCI:Jeo2008a, author = "W.-K. Jeong and R.T. Whitaker", title = "A Fast Iterative Method for Eikonal Equations", journal = "SIAM Journal on Scientific Computing", volume = "30", number = "5", pages = "2512-2534", year = "2008", url = "https://publications.utah.edu/publications/jeong08/Jeong_SIAM2008.pdf", } @InCollection{SCI:Joh2008a, author = "C.R. Johnson and X. Tricoche", title = "Biomedical Visualization", booktitle = "Advances in Biomedical Engineering", pages = "209--272", year = "2008", editor = "Pascal Verdonck", chapter = "6", publisher = "Elsvier Science", keywords = "computational biomechanics, bioengineering, biomedicine, forward problems inverse problems forward simulation inverse solutions, pse grid computing, volume rendering, transfer functions, diffusion tensor imaging, map3d, scirun, biopse, visible human, ncrr, cvrti, scientific visualization, bioelectric fields", url = "https://publications.utah.edu/publications/crj08/Johnson_Biomedvis2008.pdf", } @Article{SCI:Jol2008a, author = "M. Jolley and J.G. Stinstra and S. Pieper and R.S. MacLeod and D.H. Brooks and F. Cecchin and J.K. Triedman", title = "A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults", journal = "Heart Rhythm", volume = "5", number = "4", pages = "565--572", year = "2008", month = "April", keywords = "ncrr, cibc, bioelectric field modeling", url = "https://publications.utah.edu/publications/jolley08/Jolley_HeartRhythm2008.pdf", } @InProceedings{SCI:Jur2008b, author = "E. Jurrus and R.T. Whitaker and B. Jones and R. Marc and T. Tasdizen", title = "An Optimal-Path Approach for Neural Circuit Reconstruction", booktitle = "Proceedings of the 5th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro", pages = "1609--1612", year = "2008", keywords = "crcns, retinal reconstruction, blindness", url = "https://publications.utah.edu/publications/jurrus08/ieeeisbi2008_jurrus.pdf", } @Article{SCI:Kas2008a, author = "R. Kashani and M. Hub and J.M. Balter and M.L. Kessler and L. Dong and L. Zhang and L. Xing and Y. Xie and D. Hawkes and J.A. Schnabel and J. McClelland and S. Joshi and Q. Chen and W. Lu", title = "Objective assessment of deformable image registration in radiotherapy: a multi-institution study", journal = "Medical Physics", volume = "35", number = "12", pages = "5944--5953", year = "2008", url = "https://publications.utah.edu/publications/kashani08/Kashani_MedPhys2008.pdf", } @TechReport{SCI:Ken2008a, author = "A. Kensler and A. Knoll and P. Shirley", title = "Better Gradient Noise", number = "UUSCI-2008-001", year = "2008", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ray tracing RT", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-001.pdf", } @InProceedings{SCI:Ken2008b, author = "A. Kensler", title = "Tree Rotations for Improving Bounding Volume Heirarchies", booktitle = "Proceedings of the 2008 {IEEE} Symposium on Interactive Ray Tracing", pages = "73--76", year = "2008", } @Article{SCI:Kir2008a, author = "R.M. Kirby and C.T. Silva", title = "The Need For Verifiable Visualization", journal = "IEEE Computer Graphics and Applications", volume = "28", number = "5", pages = "78--83", year = "2008", url = "https://publications.utah.edu/publications/Kir2008a/Kirby_VisViewpoints2008.pdf", } @InProceedings{SCI:Kla2008a, author = "S. Klasky and M. Vouk and M. Parashar and A. Khan and N. Podhorszki and R. Barreto and D. Silver and S.G. Parker", title = "Collaborative Visualization Spaces for Petascale Simulations", booktitle = "Proceedings of 2008 International Symposium on Collaborative Technologies and Systems ({CTS} 2008)", pages = "203--211", year = "2008", keywords = "collaborative visualization, large scale simulation", } @Article{SCI:Kni2008a, author = "R.C. Knickmeyer and S. Gouttard and C. Kang and D. Evans and K. Wilber and K.J. Smith and R.M. Hamer and W. Lin and G. Gerig and J.H. Gilmore", title = "A Structural MRI Study of Human Brain Development from Birth to Two Years", journal = "The Journal of Neuroscience", volume = "28", number = "47", pages = "12176--12182", year = "2008", month = "Nov", url = "https://publications.utah.edu/publications/knickmeyer08/Knickmeyer_Neurosci2008.pdf", } @Article{SCI:Koo2008a, author = "D. Koop and C.E. Scheidegger and S.P. Callahan and J. Freire and C.T. Silva", title = "VisComplete: Automating Suggestions for Visualization Systems", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of {IEEE} Visualization 2008)", volume = "14", number = "6", pages = "1691--1698", year = "2008", url = "https://publications.utah.edu/publications/koop08/vis2008a.pdf", } @Article{SCI:Kri2008a, author = "L. Krishnan and C.J. Underwood and S.A. Maas and B.J. Ellis and T.C. Kode and J.B. Hoying and J.A. Weiss", title = "Effect of Mechanical Boundary Conditions on Orientation of Angiogenic Microvessels", journal = "Cardiovascular Research", volume = "78", number = "2", pages = "324--332", year = "2008", keywords = "mrl, angiogenesis, bioengineering", url = "https://publications.utah.edu/publications/krishnan08/krishnan_cardio_res_2008.pdf", } @Article{SCI:Kru2008a, author = "J. Krüger", title = "A GPU Framework for Interactive Simulation and Rendering of Fluid Effects", journal = "IT - Information Technology", volume = "4", pages = "265--268", year = "2008", keywords = "fluid dynamics, cfd", url = "https://publications.utah.edu/publications/Kru2008a/GPU_framework.pdf", } @InProceedings{SCI:Kru2008b, author = "J. Krüger and K. Potter and R.S. MacLeod and C.R. Johnson", title = "Unified Volume Format: A General System For Efficient Handling Of Large Volumetric Datasets", booktitle = "Proceedings of IADIS Computer Graphics and Visualization 2008 (CGV 2008)", pages = "19--26", year = "2008", url = "https://publications.utah.edu/publications/Kru2008b/UnifiedVolumeFormat.pdf", } @Article{SCI:Kub2008a, author = "M. Kubicki and M. Styner and S. Bouix and G. Gerig and D. Markant and K. Smith and R. Kikinis and R.W. McCarley and M.E. Shenton", title = "Reduced Interhemispheric Connectivity in Schizophrenia- Tractography Based Segmentation of the Corpus Callosum", journal = "Schizophrenia Research", volume = "106", number = "2-3", pages = "125--131", year = "2008", month = "December", } @Article{SCI:Led2008a, author = "C. Ledergerber and G. Guennebaud and M.D. Meyer and M. Bacher and H. Pfister", title = "Volume {MLS} Ray Casting", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of Visualization 2008)", volume = "14", number = "6", pages = "1539--1546", year = "2008", url = "https://publications.utah.edu/publications/ledergerber08/Ledergerber_volume_mls2008.pdf", } @Article{SCI:Lew2008a, author = "S. Lew and C.H. Wolters and A. Anwander and S. Makeig and R.S. Macleod", title = "Improved EEG Source Analysis Using Low-Resolution Conductivity Estimation in a Four-Compartment Finite Element Head Model", journal = "Human Brain Mapping", volume = "31", year = "2008", month = "December", url = "https://publications.utah.edu/publications/lew08/LewEtAl_HumanBrainMapping_2009.pdf", } @Article{SCI:Li2008a, author = "G.-S. Li and X. Tricoche and D. Weiskopf and C.D. Hansen", title = "Flow Charts: Visualization of Vector Fields on Arbitrary Surfaces", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "14", number = "5", pages = "1--14", year = "2008", month = "September/October", url = "https://publications.utah.edu/publications/li08/flowcharts.pdf", } @Article{SCI:Li2008b, author = "G.-S. Li and X. Tricoche and C.D. Hansen", title = "Physically-based Dye Advection for Flow Visualization", journal = "Computer Graphics Forum", volume = "27", number = "3", pages = "727--734", year = "2008", editor = "A. Vilanova and A. Telea and G. Scheuermann and T. Moeller", publisher = "Wiley-Blackwell", month = "May", url = "https://publications.utah.edu/publications/Li2008b/dyeadvection.pdf", } @Article{SCI:Li2008c, author = "J. Li and D. Xiu", title = "On Numerical Properties of the Ensemble Kalman Filter for Data Assimilation", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "197", number = "43--44", pages = "3574--3583", year = "2008", keywords = "Data assimilation, Uncertainty quantification, Ensemble Kalman filter", url = "https://publications.utah.edu/publications/li08/Li_CMAME2008.pdf", } @InProceedings{SCI:Lin2008a, author = "L. Lins and D. Koop and E.W. Anderson and S.P. Callahan and E. Santos and C.E. Scheidegger and J. Freire and C.T. Silva", title = "Examining Statistics of Workflow Evolution Provenance: A First Study", booktitle = "Proceedings of the 20th International Conference on Scientific and Statistical Database Management (SSDBM)", pages = "573--579", year = "2008", keywords = "vistrails, provenance, workflow management", url = "https://publications.utah.edu/publications/lins08/ssdbm08.pdf", } @Article{SCI:Lin2008b, author = "W. Lin and Q. Zhu and W. Gao and Y. Chen and C.-H. Toh and M. Styner and G. Gerig and J.K. Smith and B. Biswal and J. Gilmore", title = "Functional Connectivity Magnetic Resonance Imaging Reveals Cortical Functional Connectivity in the Developing Brain", journal = "American Journal of Neuroradiology", volume = "29", pages = "1883--1889", year = "2008", month = "Fall", keywords = "ucnia", url = "https://publications.utah.edu/publications/lin08/Functional_Connectivity_MRI.pdf", } @InCollection{SCI:Liv2008a, author = "Y. Livnat and S.G. Parker and C.R. Johnson", title = "Fast Isosurface Extraction Methods for Large Image Data Sets", booktitle = "Handbook of Medical Image Processing and Analysis", pages = "801--816", year = "2008", editor = "Isaac N. Bankman", chapter = "47", publisher = "Elsevier", edition = "2nd edition", note = "(to appear)", url = "https://publications.utah.edu/publications/livnat08/Large-scale-isosurface08.pdf", } @InProceedings{SCI:Liz2008a, author = "M. Lizier and J.F. Shepherd and L.G. Nonato and J. Comba and C.T. Silva", title = "Comparing Techniques for Tetrahedral Mesh Generation", booktitle = "Proceedings of the Inaugural International Conference of the Engineering Mechanics Institute ({EM} 2008)", pages = "(accepted)", year = "2008", url = "https://publications.utah.edu/publications/lizier08/meshing-comp.pdf", } @TechReport{SCI:Lui2008a, author = "J. Luitjens and Q. Meng and M. Berzins and T. Henderson", title = "Improving the Load Balance of Parallel Adaptive Mesh Refined Simulations", number = "UUSCI-2008-007", year = "2008", institution = "University of Utah School of Computing", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-007.pdf", } @InCollection{SCI:Lui2008b, author = "J. Luitjens and B. Worthen and M. Berzins and T. Henderson", title = "Scalable Parallel AMR for the Uintah Multiphysics Code", booktitle = "Petascale Computing Algorithms and Applications", pages = "67--82", year = "2008", chapter = "4", publisher = "CRC Press LLC.", url = "https://publications.utah.edu/publications/Lui2008b/Luitjens_Uintah_Multiphysics_Code2008.pdf", } @Article{SCI:Luj2008a, author = "T.J. Lujan and C.J. Underwood and N.T. Jacobs and J.A. Weiss", title = "Contribution of Glycosaminoglycans to Viscoelastic Tensile Behavior of Human Ligament", journal = "Journal of Applied Physiology", volume = "106", number = "2", pages = "423--431", year = "2008", keywords = "mrl", url = "https://publications.utah.edu/publications/lujan08/lujan_jap_2009.pdf", } @InProceedings{SCI:Mar2008a, author = "T. Martin and E. Cohen and R.M. Kirby", title = "Volumetric Parameterization and Trivariate B-spline Fitting using Harmonic Functions", booktitle = "Proceedings of ACM Solid and Physical Modeling", pages = "269-280", year = "2008", location = "Stony Brook, NY", note = "Awarded Best Paper", url = "https://publications.utah.edu/publications/martin08/martin_spm08.pdf", } @Article{SCI:Mcg2008a, author = "C.J. McGann and E.G. Kholmovski and R.S. Oakes and J.J. Blauer and M. Daccarett and N. Segerson and K.J. Airey and N. Akoum and E. Fish and T.J. Badger and E.V. DiBella and D.L. Parker and R.S. MacLeod and N.F. Marrouche", title = "New Magnetic Resonance Imaging-Based Method for Defining the Extent of Left Atrial Wall Injury After the Ablation of Atrial Fibrillation", journal = "Journal of the American College of Cardiology", volume = "52", number = "15", pages = "1263--1271", year = "2008", month = "Oct 7", url = "https://publications.utah.edu/publications/mcgann08/mcg2008.pdf", } @TechReport{SCI:Men2008a, author = "Q. Meng and J. Luitjens and M. Berzins", title = "A Comparison of Load Balancing Algorithms for AMR in Uintah", number = "UUSCI-2008-006", year = "2008", institution = "University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-006.pdf", } @InProceedings{SCI:Mer2008a, author = "S. Mergen and C. Heuser and J. Freire", title = "Querying Structured Information Sources on the Web", booktitle = "Proceedings of the 10th International Conference on Information Integration and Web-based Applications and Services", pages = "470--476", year = "2008", url = "https://publications.utah.edu/publications/mergen08/p470-mergen.pdf", } @Article{SCI:Mer2008b, author = "D. Merck and G. Tracton and R. Saboo and J. Levy and E. Chaney and S. Pizer and S. Joshi", title = "Training models of anatomic shape variability", journal = "Medical Physics", volume = "35", number = "8", pages = "3584--3596", year = "2008", url = "https://publications.utah.edu/publications/merck08/Merck_MedPhy2008.pdf", } @Article{SCI:Mey2008a, author = "M.D. Meyer and R.T. Whitaker and R.M. Kirby and C. Ledergerber and H. Pfister", title = "Particle-based Sampling and Meshing of Surfaces in Multimaterial Volumes", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "14", number = "6", pages = "1539--1546", year = "2008", url = "https://publications.utah.edu/publications/meyer08/Meyer_VCG2008.pdf", } @PhdThesis{SCI:Mey2008b, author = "M.D. Meyer", title = "Dynamic Particle Systems for Adaptive Sampling of Implicit Surfaces", year = "2008", school = "School of Computing, University of Utah", url = "https://publications.utah.edu/publications/meyer08/Meyer_dissertation2008.pdf", } @Article{SCI:Mor2008a, author = "L. Moreau and B. Lud{\"a}scher and I. Altintas and R. Barga and S. Bowers and S.P. Callahan and G. Chin Jr. and B. Clifford and S. Cohen and S. Cohen-Boulakia and S. Davidson and E. Deelman and L. Digiampietri and I. Foster and J. Freire and J. Frew and J. Futrelle and T. Gibson and Y. Gil and C. Goble and J. Golbeck and P. Groth and D. A. Holland and S. Jiang and J. Kim and D. Koop and A. Krenek and T. McPhillips and G. Mehta and S. Miles and D. Metzger and S. Munroe and J. Myers and B. Plale and N. Podhorszki and V. Ratnakar and E. Santos and C.E. Scheidegger and K. Schuchardt and M. Seltzer and Y. L. Simmhan and C.T. Silva and P. Slaughter and E. Stephan and R. Stevens and D. Turi and H.T. Vo and M. Wilde and J. Zhao and Y. Zhao", title = "The First Provenance Challenge", journal = "Concurrency and Computation: Practice and Experience", volume = "20", number = "5", pages = "409--418", year = "2008", month = "April", keywords = "vistrails, provenance, workflow management", } @Article{SCI:Mor2008b, author = "L. Moreau and J. Freire and J. Futrelle and R.E. McGrath and J. Myers and P. Paulson", title = "The Open Provenance Model: An Overview", journal = "Provenance and Annotation of Data and Processes", pages = "323--326", year = "2008", series = "Lecture Notes in Computer Science (LNCS)", isbn = "978-3-540-89964-8", keywords = "provenance, vistrails", url = "https://publications.utah.edu/publications/moreau08/Moreau_LNCS2008.pdf", } @Article{SCI:Muk2008a, author = "N. Mukherjee and C. Kang and H.M. Wolfe and B.S. Hertzberg and J.K. Smith and W. Lin and G. Gerig and R.M. Hamer and J.H. Gilmore", title = "Discordance of Prenatal and Neonatal Brain Development in Twins", journal = "Early Human Development", pages = "(in press)", year = "2008", month = "August", keywords = "ucnia", url = "https://publications.utah.edu/publications/mukherjee08/Twin_Discordance.pdf", } @Article{SCI:New2008a, author = "E.P. Newren and A.L. Fogelson and R.D. Guy and R.M. Kirby", title = "A Comparison of Implicit Solvers for the Immersed Boundary Equations", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "197", number = "25--28", pages = "2290--2304", year = "2008", url = "https://publications.utah.edu/publications/newren08/CompImplicitSolvers.pdf", } @Article{SCI:Ngu2008a, author = "H. Nguyen and T. Nguyen and J. Freire", title = "Learning to Extract Form Labels", journal = "Proceedings of the VLDB Endowment", volume = "1", number = "1", pages = "684--694", year = "2008", publisher = "VLDB Endowment", month = "Aug", url = "https://publications.utah.edu/publications/Ngu2008a/labelex-vldb2008.pdf", } @InProceedings{SCI:Ngu2008b, author = "H. Nguyen and E.Y. Kang and J. Freire", title = "Automatically Extracting Form Labels", booktitle = "Proceedings of the 2008 {IEEE} 24th International Conference on Data Engineering", pages = "1498--1500", year = "2008", url = "https://publications.utah.edu/publications/nguyen08/label-extraction-icde2008.pdf", } @Article{SCI:Och2008a, author = "T. Ochotta and D. Saupe", title = "Image-Based Surface Compression", journal = "Computer Graphics Forum", volume = "27", number = "6", pages = "1647--1663", year = "2008", url = "https://publications.utah.edu/publications/ochotta08/OcSa06.pdf", } @InProceedings{SCI:Ogu2008a, author = "I. Oguz and J. Cates and P.T. Fletcher and R.T. Whitaker and D. Cool and S. Aylward and M. Styner", title = "Cortical Correspondence using Entropy-Based Particle Systems and Local Features", booktitle = "5th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, 2008. (ISBI 2008)", pages = "1637--1640", year = "2008", url = "https://publications.utah.edu/publications/oguz08/Oguz_ISBI2008.pdf", } @InProceedings{SCI:Pal2008a, author = "R. Palmer and M. DeLisi and G. Gopalakrishnan and R.M. Kirby", title = "An Approach to Formalization and Analysis of Message Passing Libraries", booktitle = "Proceedings of the 12th International Workshop on Formal Methods for Industrial Critical Systems ({FMICS} 2007)", volume = "4916/2008", pages = "164--181", year = "2008", location = "Berlin, Germany", note = "Awarded Best Paper.", } @InProceedings{SCI:Peg2008a, author = "V. Pegoraro and I. Wald and S.G. Parker", title = "Sequential Monte Carlo Adaptation in Low-Anisotropy Participating Media", booktitle = "Proceedings of the 19th Eurographics Symposium on Rendering", pages = "1097--1104", year = "2008", url = "https://publications.utah.edu/publications/pegoraro08/SequentialMonteCarloAdaptationInLowAnisotropyParticipatingMedia.pdf", } @InProceedings{SCI:Peg2008b, author = "V. Pegoraro and C. Brownlee and P.S. Shirley and S.G. Parker", title = "Towards Interactive Global Illumination Effects via Sequential Monte Carlo Adaptation", booktitle = "Proceedings of the 3rd {IEEE} Symposium on Interactive Ray Tracing", pages = "107--114", year = "2008", url = "https://publications.utah.edu/publications/pegoraro08/TowardsInteractiveGlobalIlluminationEffectsViaSequentialMonteCarloAdaptation.pdf", } @Article{SCI:Pha2008a, author = "N.S. Phatak and S.A. Maas and A.I. Veress and N.A. Pack and E.V.R. Di Bella and J.A. Weiss", title = "Strain measurement in the left ventricle during systole with deformable image registration", journal = "Medical Image Analysis", pages = "(in press)", year = "2008", } @InCollection{SCI:Piz2008g, author = "S. Pizer and M. Styner and T. Terriberry and R. Broadhurst and S. Joshi and E. Chaney and P.T. Fletcher", title = "Statistical Applications with Deformable M-Reps", booktitle = "Computational Imaging and Vision", pages = "269--308", year = "2008", publisher = "Springer", url = "https://publications.utah.edu/publications/Piz2008g/Pizer_MRMAA2009.pdf", } @InProceedings{SCI:Pot2008a, author = "K. Potter and J. Krüger and C.R. Johnson", title = "Towards the Visualization of Multi-Dimentional Stochastic Distribution Data", booktitle = "Proceedings of The International Conference on Computer Graphics and Visualization ({IADIS}) 2008", pages = "191--196", year = "2008", url = "https://publications.utah.edu/publications/Pot2008a/CGV08-Potter-Kruger-Johnson.pdf", } @InProceedings{SCI:Pra2008b, author = "M.W. Prastawa and G. Gerig", title = "Brain Lesion Segmentation Through Physical Model Estimation", booktitle = "Lecture Notes in Computer Science", volume = "5358", pages = "562--571", year = "2008", keywords = "ucnia", url = "https://publications.utah.edu/publications/prastawa08/Prastawa_LNCS2008a.pdf", } @Article{SCI:Pre2008a, author = "T. Preusser and H. Scharr and K. Krajsek and R.M. Kirby", title = "Building Blocks for Computer Vision with Stochastic Partial Differential Equations", journal = "International Journal of Computer Vision", volume = "80", number = "3", pages = "375--405", year = "2008", publisher = "Springer", month = "July", keywords = "computer vision", } @Article{SCI:Pri2008g, author = "J.C. Principe and J. Xu and R. Jenssen and A.R.C. Paiva and I. Park", title = "A Reproducing Kernel Hilbert Space framework for Information-Theoretic Learning", journal = "IEEE Transactions on Signal Processing", volume = "56", number = "12", pages = "5891--5902", year = "2008", editor = "J.C. Principe", publisher = "IEEE", month = "Dec", isbn = "978-1-4419-1569-6", url = "https://publications.utah.edu/publications/Pri2008g/2010e.pdf", } @Article{SCI:Rul2008a, author = "M. Rullmann and A. Anwander and M. Dannhauer and S.K. Warfield and F.H. Duffy and C.H. Wolters", title = "{EEG} Source Analysis of Epileptiform Activity Using a 1mm Anisotropic Hexahedra Finite Element Head Model.", journal = "NeuroImage", volume = "44", number = "2", pages = "399--410", year = "2008", url = "https://publications.utah.edu/publications/rullmann08/RullmannEtAl_NeuroImage2008.pdf", } @InProceedings{SCI:Sad2008a, author = "N. Sadeghi and N.L. Foster and A.Y. Wang and S. Minoshima and A.P. Lieberman and T. Tasdizen", title = "Automatic Classification of Alzheimer", booktitle = "Proceedings of {IEEE} International Symposium on Biomedical Imaging ({ISBI} 2008): From Nano to Macro", pages = "408--411", year = "2008", keywords = "PET, alzheimers, dementia, automatic classification", url = "https://publications.utah.edu/publications/sadeghi08/Sadeghi_ISBI2008.pdf", } @InProceedings{SCI:San2008b, author = "E. Santos and L. Lins and J.P. Ahrens and J. Freire and C.T. Silva", title = "A First Study on Clustering Collections of Workflow Graphs", booktitle = "Proceedings of the Second International Provenance and Annotation Workshop (IPAW 2008)", pages = "160--173", year = "2008", keywords = "vistrails, workflows, provenance", url = "https://publications.utah.edu/publications/santos08/ipaw2008b.pdf", } @Article{SCI:Sch2008a, author = "C.E. Scheidegger and D. Koop and E. Santos and H.T. Vo and S.P. Callahan and J. Freire and C.T. Silva.", title = "Tackling the Provenance Challenge One Layer at a Time", journal = "Concurrency Computat.: Pract. Exper.", volume = "20", number = "5", pages = "473--483", year = "2008", keywords = "vistrails, provenance, , vistrails, vacet", url = "https://publications.utah.edu/publications/scheidegger07/tackling.pdf", } @InProceedings{SCI:Sch2008b, author = "C.E. Scheidegger and H.T. Vo and D. Koop and J. Freire and C.T. Silva", title = "Querying and Re-Using Workflows with {VisTrails}", booktitle = "Proceedings of the 2008 {ACM} {SIGMOD} International Conference on Management of Data", pages = "1251--1254", year = "2008", keywords = "vistrails, provenance, workflows", } @TechReport{SCI:Sch2008c, author = "J.A. Schmidt", title = "Uintah Application Development", number = "UUSCI-2008-005", year = "2008", institution = "University of Utah", type = "SCI Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-005.pdf", } @TechReport{SCI:Sch2008d, author = "M. Schott and V. Pegoraro and C.D. Hansen and K. Boulanger and J. Stratton and K. Bouatouch", title = "A Directional Occlusion Shading Model for Interactive Direct Volume Rendering", number = "UUSCI-2008-009", year = "2008", institution = "University of Utah Scientific Computing and Imaging Institute", type = "SCI Technical Report", keywords = "volume rendering", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2008-009.pdf", } @Article{SCI:Sch2008e, author = "C.E. Scheidegger and J. Schreiner and B. Duffy and H. Carr and C.T. Silva", title = "Revisiting Histograms and Isosurface Statistics", journal = "{IEEE} Transactions on Visualization and Computer Graphics (Proceedings of {IEEE} Visualization 2008)", volume = "14", number = "6", pages = "1659--1666", year = "2008", url = "https://publications.utah.edu/publications/scheidegger08/vis2008c.pdf", } @InProceedings{SCI:Sha2008a, author = "S. Sharma and S. Vakkalanka and G. Gopalakrishnan and R.M. Kirby and R. Thakur and W. Gropp", title = "A Formal Approach to Detect Functionally Irrelevant Barriers in {MPI} Programs", booktitle = "Proceedings of EuroPVM-MPI 2008", volume = "5205", pages = "265--273", year = "2008", month = "September", location = "Dublin, Ireland", } @Article{SCI:She2008a, author = "J.F. Shepherd and C.R. Johnson", title = "Hexahedral Mesh Generation Constraints", journal = "Journal of Engineering with Computers", volume = "24", number = "3", pages = "195--213", year = "2008", keywords = "meshing", url = "https://publications.utah.edu/publications/shepherd07/EWC_hex_constraints.pdf", } @Article{SCI:Shv2008a, author = "A.G. Shvedko and M.D. Warren and S. Shome and J.G. Stinstra and A.V. Zaitsev", title = "Influence of the Skeletal Muscle Activity on Time and Frequency Domain Properties of the Body Surface {ECG} During Evolving Ventricular Fibrillation in the Pig", journal = "Resuscitation", volume = "78", number = "2", pages = "215--223", year = "2008", month = "May 24", keywords = "inverse ECG, electrocardiology, heart", } @Article{SCI:Sil2008a, author = "C.T. Silva and J. Tohline", title = "Guest Editorial: Special Issue on Computational Provenance", journal = "Computing in Science and Engineering", volume = "10", number = "3", pages = "9--10", year = "2008", url = "https://publications.utah.edu/publications/silva08/cise2008e.pdf", } @Article{SCI:Sil2008b, author = "C.T. Silva and J. Freire", title = "Software Infrastructure for Exploratory Visualization and Data Analysis: Past, Present and Future", journal = "Journal of Physics: Conference Series (SciDAC 2008 Conference)", volume = "125", year = "2008", url = "https://publications.utah.edu/publications/silva08/jpconf8_125_012100.pdf", } @InProceedings{SCI:Spj2008a, author = "J. Spjut and D. Kopta and S. Kellis and S. Boulos and E. Brunvand", title = "TRaX: A Multi-Threaded Architecture for Real-Time Ray Tracing", booktitle = "Proceedings of the {IEEE} Symposium on Application Specific Processors, SASP 2008", pages = "(in press)", year = "2008", note = "Awarded Best Paper", url = "https://publications.utah.edu/publications/spjut08/sasp.pdf", } @Article{SCI:Ste2008a, author = "M. Steffen and S. Curtis and R.M. Kirby and J.K. Ryan", title = "Investigation of Smoothness-Increasing Accuracy-Conserving Filters for Improving Streamline Integration Through Discontinuous Fields", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "14", number = "3", pages = "680--692", year = "2008", url = "https://publications.utah.edu/publications/steffen08/steffen_08_TVCG_streamlines.pdf", } @Article{SCI:Ste2008b, author = "M. Steffen and R.M. Kirby and M. Berzins", title = "Analysis and Reduction of Quadrature Errors in the Material Point Method ({MPM})", journal = "International Journal for Numerical Methods in Engineering", volume = "76", number = "6", pages = "922--948", year = "2008", keywords = "material point method MPM, quadrature error, error analysis", url = "https://publications.utah.edu/publications/Ste2008b/steffen_08_IJNME_mpm_preprint.pdf", } @Article{SCI:Ste2008c, author = "M. Steffen and P.C. Wallstedt and J.E. Guilkey and R.M. Kirby and M. Berzins", title = "Examination and Analysis of Implementation Choices within the Material Point Method ({MPM})", journal = "Computer Modeling in Engineering & Sciences", volume = "31", number = "2", pages = "107--127", year = "2008", url = "https://publications.utah.edu/publications/Ste2008c/steffen_2008_cmes.pdf", } @InProceedings{SCI:Sti2008a, author = "J.G. Stinstra and M.A. Jolley and J.D. Tate and D.H. Brooks and J.K. Triedman and R.S. MacLeod", title = "The Role of Volume Conductivities in Simulation of Implantable Defibrillators", booktitle = "Computers in Cardiology", year = "2008", location = "Bologna, Italy", url = "https://publications.utah.edu/publications/stinstra08/Stinstra_CinC2008.pdf", } @InProceedings{SCI:Sti2008b, author = "J.G. Stinstra and M. Jolley and M. Callahan and D.M. Weinstein and M. Cole and D.H. Brooks and J. Triedman and R.S. MacLeod", title = "Evaluation of Different Meshing Algorithms in the Computation of Defibrillation Thresholds in Children", booktitle = "Proceedings of the 29th Annual International Conference of the {IEEE} {EMBS}", pages = "1422-1425", year = "2008", isbn = "978-1-4244-0787-3", url = "https://publications.utah.edu/publications/stinstra08/stinstra-embs07-defib.pdf", } @InProceedings{SCI:Sty2008a, author = "M. Styner and I. Oguz and T. Heimann and G. Gerig", title = "Minimum Description Length with Local Geometry", booktitle = "Proceedings of the 5th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro ({ISBI} 2008)", pages = "1283--1286", year = "2008", keywords = "ucnia", url = "https://publications.utah.edu/publications/styner08/ISBI2008-Styner-MDL.pdf", } @Article{SCI:Sut2008a, author = "D.R. Sutherland and Q. Ni and R.S. MacLeod and R.L. Lux and B.B. Punske", title = "Experimental Measures of Ventricular Activation and Synchrony", journal = "Pacing and Clinical Electrophysiology", volume = "31", number = "12", pages = "1560--1570", year = "2008", month = "December", keywords = "cvrti, electrocardiology", url = "https://publications.utah.edu/publications/sutherland08/Sutherland_PCEP2008.pdf", } @Article{SCI:Tac2008a, author = "B. Taccardi and B.B. Punske and E. Macchi and R.S. MacLeod and P.R. Ershler", title = "Epicardial and Intramural Excitation During Ventricular Pacing: Effect of Myocardial Structure", journal = "The American Journal of Physiology - Heart and Circulatory Physiology", volume = "294", number = "4", pages = "H1753--1766", year = "2008", month = "April", url = "https://publications.utah.edu/publications/taccardi08/AmJPhysiolHeartCircPhysiol_2008.pdf", } @InProceedings{SCI:Tas2008a, author = "T. Tasdizen", title = "Principal Components for Non-Local Means of Image Denoising", booktitle = "Proceedings of the International Conference on Image Processing ({ICIP} 2008)", pages = "1728--1731", year = "2008", url = "https://publications.utah.edu/publications/tasdizen08/Tasdizen_Denoising2008.pdf", } @InProceedings{SCI:Tas2008b, author = "T. Tasdizen and E. Jurrus and R. T. Whitaker", title = "Non-uniform Illumination Correction in Transmission Electron Microscopy", booktitle = "MICCAI Workshop on Microscopic Image Analysis with Applications in Biology", year = "2008", url = "https://publications.utah.edu/publications/Tas2008b/MIAAB08illumination.pdf", } @InProceedings{SCI:Tra2008a, author = "L.T. Tran and J. Kim and M. Berzins", title = "An Introduction to the Material Point Method using a Case Study from Gas Dynamics", booktitle = "Numerical Analysis and Applied Mathematics: International Conference on Numerical Analysis and Applied Mathematics 2008. {AIP} Conference Proceedings", volume = "1048", pages = "26--29", year = "2008", editor = "T.E. Simos and G. Psihoyios and Ch. Tsitouras", isbn = "978-0-7354-0576-9", keywords = "error analysis, mathematics computing, differential equations, transforms, finite difference methods, functional analysis", url = "https://publications.utah.edu/publications/tran08/MPMPRINT.pdf", } @InProceedings{SCI:Tri2008a, author = "X. Tricoche and R.S. MacLeod and C.R. Johnson", title = "Visual Analysis of Bioelectric Fields", booktitle = "Visualization in Medicine and Life Sciences", pages = "205--220", year = "2008", publisher = "Mathematics and Visualization, Springer-Verlag", keywords = "ncrr, scientific visualization, bioelectric fields", url = "https://publications.utah.edu/publications/tricoche08/vmls.pdf", } @Article{SCI:Tri2008b, author = "J.K. Triedman and M. Jolley and J. Stinstra and D.H. Brooks and R.S. MacLeod", title = "Predictive Modeling of Defibrillation Using Hexahedral and Tetrahedral Finite Element Models: Recent Advances", journal = "Journal of Electrocardiology", volume = "41", pages = "483--486", year = "2008", url = "https://publications.utah.edu/publications/triedman08/Treidman08-JE.pdf", } @InProceedings{SCI:Vak2008a, author = "S. Vakkalanka and M. DeLisi and G. Gopalakrishnan and R.M. Kirby and R. Thakur and W. Gropp", title = "Implementing Efficient Dynamic Formal Verification Methods for {MPI} Programs", booktitle = "Recent Advances in Parallel Virtual Machine and Message Passing Interface Lecture Notes in Computer Science", volume = "5205", pages = "248--256", year = "2008", month = "September", location = "Dublin, Ireland", } @InProceedings{SCI:Vak2008b, author = "S. Vakkalanka and M. DeLisi and G. Gopalakrishnan and R.M. Kirby", title = "Scheduling Considerations for Building Dynamic Verification Tools for {MPI}", booktitle = "Proceedings of the 6th Workshop on Parallel and Distributed Systems: Testing, Analysis, and Debugging", volume = "3", pages = "1--6", year = "2008", series = "PADTAD '08", publisher = "ACM", location = "Seattle, WA", isbn = "978-1-60558-052-4", } @InProceedings{SCI:Vak2008c, author = "S. Vakkalanka and G. Gopalakrishnan and R.M. Kirby", title = "Dynamic Verification of {MPI} Programs with Reductions in Presence of Split Operations and Relaxed Orderings", booktitle = "Computer Aided Verification Lecture Notes in Computer Science ", volume = "5123", pages = "66--79", year = "2008", month = "July", } @Article{SCI:Vas2008a, author = "S.X. Vasquez and M.S. Hansen and A.N. Bahadur and M.F. Hockin and G.L. Kindlmann and L. Nevell and I.Q. Wu and D.J. Grunwald and D.M. Weinstein and G.M. Jones and C.R. Johnson and J.L. Vandeberg and M.R. Capecchi and C. Keller", title = "Optimization of Volumetric Computed Tomography for Skeletal Analysis of Model Genetic Organisms", journal = "The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology", volume = "291", pages = "475--487", year = "2008", keywords = "ncrr, cibc", url = "https://publications.utah.edu/publications/vasquez08/Vasquez_InterScience2008.pdf", } @Article{SCI:Ver2008a, author = "A.I. Veress and J.A. Weiss and R.H. Huesman and B.W. Reutter and S.E . Taylor and A. Sitek and B. Feng and Y. Yang and G.T. Gullberg", title = "Measuring Regional Changes in the Diastolic Deformation of the Left Ventricle of SHR Rats Using MicroPET Technology and Hyperelastic Warping", journal = "Annals of Biomedical Engingeering", volume = "36", number = "7", pages = "1104--1017", year = "2008", keywords = "bioengineering, cardiology, warping, MRL", url = "https://publications.utah.edu/publications/veress08/veress_abe_2008.pdf", } @InProceedings{SCI:Vie2008a, author = "K. Vieira and L. Barbosa and J. Freire and A. Silva", title = "Siphon++: A Hidden-Web Crawler for Keyword-Based Interfaces", booktitle = "Proceeding of the 17th ACM conference on Information and knowledge management (CIKM)", pages = "1361--1362", year = "2008", month = "November", url = "https://publications.utah.edu/publications/vieira08/p1361-vieira.pdf", } @Article{SCI:Wal2008a, author = "I. Wald and T. Ize and S.G. Parker", title = "Fast, Parallel, and Asynchronous Construction of BVHs for Ray Tracing Animated Scenes", journal = "Computers and Graphics", volume = "32", number = "1", pages = "3--13", year = "2008", month = "February", url = "https://publications.utah.edu/publications/wald08/AsyncBVHJournal.pdf", } @InProceedings{SCI:Wan2008a, author = "H. Wang and C.E. Scheidegger and C.T. Silva", title = "Optimal Bandwidth Selection for MLS Surfaces", booktitle = "{IEEE} International Conference on Shape Modeling and Applications ({SMI}) 2008", pages = "111--120", year = "2008", isbn = "978-1-4244-2260-9", url = "https://publications.utah.edu/publications/wang08/OptBandwidthMLS.pdf", } @InProceedings{SCI:Whi2008a, author = "R.T. Whitaker and R.M. Kirby and J.G. Sinstra and M.D. Meyer", title = "Multimaterial Meshing of MRI Head Data for Bioelectric Field Simulations", booktitle = "Proceedings of the 17th International Meshing Roundtable", year = "2008", url = "https://publications.utah.edu/publications/whitaker08/Whitaker_multimaterial_mri2008.pdf", } @Article{SCI:Xiu2008a, author = "D. Xiu", title = "Numerical Integration Formulas of Degree Two", journal = "Applied Numerical Mathematics", volume = "58", number = "10", pages = "1515--1520", year = "2008", keywords = "Numerical integration, Cubature formulas", url = "https://publications.utah.edu/publications/xiu08/Xiu_ANM2008.pdf", } @InProceedings{SCI:Xu2008a, author = "S. Xu and M. Styner and J.H. Gilmore and G. Gerig", title = "Multivariate Longitudinal Statistics for Neonatal-Pediatric Brain Tissue Development", booktitle = "Proceedings of SPIE Medical Imaging 2008", volume = "6914", year = "2008", month = "February", keywords = "ucnia", url = "https://publications.utah.edu/publications/Xu2008a/spie08-xu.pdf", } @InProceedings{SCI:Xu2008b, author = "S. Xu and M. Styner and J. Gilmore and J. Piven and G. Gerig", title = "Multivariate Nonlinear Mixed Model to Analyze Longitudinal Image Data: {MRI} Study of Early Brain Development", booktitle = "Proceedings of {IEEE} Workshop on Mathematical Methods in Biomedical Image Analysis ({MMBIA}) 2008", pages = "1--8", year = "2008", publisher = "{IEEE} Computer Society", month = "June", isbn = "978-1-4244-2339-2", keywords = "ucnia", url = "https://publications.utah.edu/publications/xu08/mmbia08_xu.pdf", } @InProceedings{SCI:Yan2008a, author = "Y. Yang and X. Chen and G. Gopalakrishnan and R.M. Kirby", title = "Efficient Stateful Dynamic Partial Order Reduction", booktitle = "Proceedings of Model Checking Software: 15th International {SPIN} Workshop", volume = "5156", pages = "288--305", year = "2008", month = "August", location = "Los Angeles, CA", } @InProceedings{SCI:Yau2008a, author = "S. Yau and K. Damevski and D. Zorin and V. Karamcheti and S.G. Parker", title = "Result Reuse in Design Space Exploration: A Study in System Support for Interactive Parallel Computing", booktitle = "Proceedings of the 22nd International Parallel and Distributed Processing Symposium ({IPDPS} 2008)", pages = "1--12", year = "2008", location = "Miami, Florida", } @Article{SCI:Zha2008a, author = "F. Zhang and E.R. Hancock and C. Goodlett and G. Gerig", title = "Probabilistic White Matter Fiber Tracking using, Particle Filtering and von Mises-Fisher Sampling", journal = "Medical Image Analysis (MedIA)", pages = "(in print)", year = "2008", keywords = "ucnia", url = "https://publications.utah.edu/publications/zhang08/Fan_Zhang_MedIA2008.pdf", } @Article{SCI:Adl2007a, author = "G. Adluru and S.P. Awate and T. Tasdizen and R.T. Whitaker and E.V.R. DiBella", title = "Temporally Constrained Reconstruction of Dynamic Cardiac Perfusion MRI", journal = "Magnetic Resonance in Medicine", volume = "57", pages = "1027--1036", year = "2007", keywords = "ncrr", url = "https://publications.utah.edu/publications/adluru07/Adluru_MRM_07.pdf", } @InProceedings{SCI:Adl2007b, author = "G. Adluru and R.T. Whitaker and E.V.R. DiBella", title = "Spatio-Temporal Constrained Reconstruction of Sparse Dynamic Contrast Enhanced Radial {MRI} Data", booktitle = "Proceedings of the {IEEE} International Symposium on Biomedical Imaging", pages = "109--112", year = "2007", keywords = "ncrr", url = "https://publications.utah.edu/publications/adluru07/Adluru_ISBI_07.pdf", } @InProceedings{SCI:Adl2007c, author = "G. Adluru and E. Hsu and E.V.R. DiBella", title = "Constrained Reconstruction of Sparse Cardiac MR DTI Data", booktitle = "Proceedings of FIMH 2007", number = "4466", pages = "91--99", year = "2007", series = "LNCS", keywords = "tensor field methods, diffusion tensor imaging, cardiac heart", url = "https://publications.utah.edu/publications/adluru07/Adluru_FIMH_07.pdf", } @Article{SCI:Alt2007a, author = "O. Alter", title = "Genomic Signal Processing: From Matrix Algebra to Genetic Networks", journal = "Microarray Data Analysis: Methods in Molecular Biology", volume = "377", pages = "17--59", year = "2007", editor = "M.J. Korenberg", publisher = "Humana Press, Totowa", url = "https://publications.utah.edu/publications/alter07/Alter_Humana2007.pdf", } @InProceedings{SCI:And2007b, author = "E.W. Anderson and S.P. Callahan and C.E. Scheidegger and J.M. Schriener and C.T. Silva", title = "Hardware-Assisted Point-Based Volume Rendering of Tetrahedral Meshes", booktitle = "Proceedings of SIBGRAPI 2007", pages = "163--170", year = "2007", keywords = "volume rendering", url = "https://publications.utah.edu/publications/anderson07/pbvr.pdf", } @InProceedings{SCI:And2007c, author = "E.W. Anderson and G.A. Preston and C.T. Silva", title = "Towards Development of a Circuit Based Treatment for Impaired Memory: A Multidisciplinary Approach", booktitle = "Proceedings of {IEEE} {EMBS} Neural Engineering 2007", pages = "163--172", year = "2007", keywords = "neuro brain", url = "https://publications.utah.edu/publications/anderson07/embs2007_neuro.pdf", } @Article{SCI:And2007d, author = "A.E. Anderson and B.J. Ellis and J.A. Weiss", title = "Verification, Validation and Sensitivity Studies in Computational Biomechanics", journal = "Computer Methods in Biomechanics and Biomedical Engineering", volume = "10", number = "3", pages = "171--184", year = "2007", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/anderson07/anderson_cmbbe_2007.pdf", } @InProceedings{SCI:And2007e, author = "E.W. Anderson and S.P. Callahan and D.A. Koop and E. Santos and C.E. Scheidegger and H.T. Vo and J. Freire and C.T. Silva", title = "VisTrails: Using Provenance to Streamline Data Exploration", booktitle = "Poster Proceedings of the International Workshop on Data Integration in the Life Sciences (DILS) 2007", year = "2007", note = "Poster presentation", keywords = "vistrails", } @Article{SCI:Ate2007a, author = "G.A. Ateshian and B.J. Ellis and J.A. Weiss", title = "Equivalence Between Short-Time Biphasic and Incompressible Elastic Material Response", journal = "Journal of Biomechanical Engineering", volume = "129", number = "3", pages = "405--412", year = "2007", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/ateshian07/ateshian_jbme_2007.pdf", } @Article{SCI:Awa2007a, author = "S. Awate and R.T. Whitaker", title = "Feature-Preserving {MRI} Denoising: A Nonparametric Empirical-{B}ayes Approach", journal = "IEEE Transactions on Medical Imaging", volume = "26", number = "9", pages = "1242--1255", year = "2007", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/awate07/Awate_MRI_Denoising_TMI.pdf", } @Article{SCI:Bah2007a, author = "A.N. Bahadur and I.Q. Wu and D.M. Weinstein and M.D. Davis and D.A. Lewis and P. Kochunov and C. Keller", title = "Multimodality Chamber for Coregistered Anatomical and Molecular Imaging of Small Animals", journal = "Lab Animal", volume = "36", number = "8", pages = "29--35", year = "2007", } @InProceedings{SCI:Bar2007a, author = "L. Barbosa and J. Freire", title = "An Adaptive Crawler for Locating Hidden-Web Entry Points", booktitle = "Proceedings of the 16th international conference on World Wide Web (WWW)", pages = "441--450", year = "2007", month = "May", location = "Banff, Alberta, Canada", url = "https://publications.utah.edu/publications/barbosa07/Barbosa_WWW2007a.pdf", } @InProceedings{SCI:Bar2007b, author = "L. Barbosa and J. Freire", title = "Combining Classifiers to Identify Online Databases", booktitle = "Proceedings of the 16th International Conference on World Wide Web (WWW)", pages = "431--440", year = "2007", month = "May", location = "Banff, Alberta, Canada", url = "https://publications.utah.edu/publications/barbosa07/Barbosa_WWW2007b.pdf", } @InProceedings{SCI:Bar2007c, author = "L. Barbosa and J. Freire and A. Silva", title = "Organizing Hidden-Web Databases by Clustering Visible Web Documents", booktitle = "Proceedings of the {IEEE} 23rd International Conference on Data Engineering, 2007. ({ICDE} 2007)", pages = "326--335", year = "2007", location = "Istanbul", url = "https://publications.utah.edu/publications/barbosa07/Barbosa_ICDE2007.pdf", } @Article{SCI:Bar2007d, author = "L. Barbosa and S. Tandon and J. Freire", title = "Automatically Constructing a Directory of Molecular Biology Databases", journal = "Data Integration in the Life Sciences", volume = "4544/2007", pages = "6--16", year = "2007", series = "Lecture Notes in Computer Science (LNCS)", isbn = "978-3-540-73254-9", url = "https://publications.utah.edu/publications/barbosa07/Barbosa_LNCS2007.pdf", } @InProceedings{SCI:Bav2007a, author = "L. Bavoil and S.P. Callahan and A. Lefohn and J.L.D. Comba and C.T. Silva", title = "Multi-Fragment Effects on the GPU using the k-Buffer", booktitle = "{ACM} Symposium on Interactive {3D} Graphics and Games (i3D)", pages = "97--104", year = "2007", keywords = "volume rendering", url = "https://publications.utah.edu/publications/bavoil07/kbuffer_preprint.pdf", } @Article{SCI:Bel2007a, author = "M.K. Belmonte and J.C. Mazziotta and N.J. Minshew and A.C. Evans and E. Courchesne and S.R. Dager and S.Y. Bookheimer and E.H. Aylward and D.G. Amaral and R.M. Cantor and D.C. Chugani and A.M. Dale and C. Davatzikos and G. Gerig and M.R. Herbert and J.E. Lainhart and D.G. Murphy and J. Piven and A.L. Reiss and R.T. Schultz and T.A. Zeffiro and S. Levi-Pearl and C. Lajonchere and S.A. Colamarino", title = "Offering to Share: How to Put Heads Together in Autism Neuroimaging", journal = "Journal of Autism and Developmental Disorders JADD", volume = "38", pages = "2--13", year = "2007", url = "https://publications.utah.edu/publications/belmonte08/Belmonte_JADD2007.pdf", } @TechReport{SCI:Ben2007a, author = "C. Benthin and S. Boulos and D. Lacewell and I. Wald", title = "Packet-based Ray Tracing of Catmull-Clark Subdivision Surfaces", number = "UUSCI-2007-011", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-011.pdf", } @InProceedings{SCI:Ben2007b, author = "J. Bennett and V. Pascucci and K.I. Joy", title = "Genus Oblivious Cross Parameterization: Robust Topological Management of Intersurface Maps", booktitle = "Proceedings of Pacific Graphics 2007", year = "2007", } @Article{SCI:Ber2007a, author = "F.F. Bernardon and S.P Callahan and J.L.D. Comba and C.T. Silva", title = "An Adaptive Framework for Visualizing Unstructured Grids with Time-Varying Scalar Fields", journal = "Journal on Parallel Computing", volume = "33", number = "6", pages = "391--405", year = "2007", keywords = "vacet", url = "https://publications.utah.edu/publications/bernardon07/parco07.pdf", } @TechReport{SCI:Ber2007b, author = "F.F. Bernardon and L.K. Ha and S.P. Callahan and J.L.D. Comba and C.T. Silva", title = "Interactive Transfer Function Specification for Direct Volume Rendering of Disparate Volumes", number = "UUSCI-2007-007", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "volume rendering, transfer functions", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-007.pdf", } @Article{SCI:Ber2007c, author = "M. Berzins", title = "Is there Still More to Science than Computation?", journal = "Computing in Science and Engineering", volume = "9", number = "1", pages = "98--101", year = "2007", keywords = "scientific computing", url = "https://publications.utah.edu/publications/berzins07/CISEPAPER.pdf", } @Article{SCI:Ber2007d, author = "M. Berzins", title = "Adaptive Polynomial Interpolation on Evenly Spaced Meshes.", journal = "SIAM Review", volume = "49", number = "4", pages = "604-627", year = "2007", url = "https://publications.utah.edu/publications/berzins07/SIpapv4.pdf", } @Article{SCI:Bet2007a, author = "E.W. Bethel and C.R. Johnson and K. Joy and S. Ahern and V. Pascucci and H. Childs and J. Cohen and M. Duchaineau and B. Hamann and C.D. Hansen and D. Laney and P. Lindstrom and J. Meredith and G. Ostrouchov and S.G. Parker and C.T. Silva and A.R. Sanderson and X. Tricoche", title = "SciDAC Visualization and Analytics Center for Enabling Technology", journal = "Journal of Physics", volume = "78", number = "012032", pages = "(published online)", year = "2007", series = "Conference Series", keywords = "vacet", url = "https://publications.utah.edu/publications/bethel07/VACET-Paper07-Final.pdf", } @Article{SCI:Bet2007b, author = "E.W. Bethel and C.R. Johnson and C. Aragon and Prabhat and O. R{\"u}bel and G. Weber and V. Pascucci and H. Childs and P.-T. Bremer and B. Whitlock and S. Ahern and J. Meredith and G. Ostrouchov and K. Joy and B. Hamann and C. Garth and M. Cole and C.D. Hansen and S.G. Parker and A.R. Sanderson and C.T. Silva and X. Tricoche", title = "DOE's SciDAC Visualization and Analytics Center for Enabling Technologies - Strategy for Petascale Visual Data Analysis Success", journal = "CTWatch Quarterly", volume = "3", number = "4", year = "2007", } @InProceedings{SCI:Bou2007a, author = "S. Boulos and D. Edwards and J.D. Lacewell and J. Kniss and J. Kautz and I. Wald and P. Shirley", title = "Packet-based Whitted and Distribution Ray Tracing", booktitle = "Proceedings of Graphics Interface 2007", volume = "234", pages = "177--184", year = "2007", keywords = "rtcenter", url = "https://publications.utah.edu/publications/boulos07/packetdrt.pdf", } @InProceedings{SCI:Bre2007a, author = "P.-T. Bremer and E.M. Bringa and M.A. Duchaineau and A. Gyulassy and D. Laney and A. Mascarenhas and V. Pascucci", title = "Topological Feature Extraction and Tracking", booktitle = "Proceedings of SciDAC 2007 -- Scientific Discovery Through Advanced Computing", volume = "78", pages = "012032 (5pp)", year = "2007", publisher = "Journal of Physics Conference Series", month = "June", location = "Boston, MA, USA", } @InCollection{SCI:Bre2007b, author = "P.-T. Bremer and V. Pascucci", title = "A Practical Approach to Two-Dimensional Scalar Topology", booktitle = "Mathematics and Visualization", pages = "151--169", year = "2007", publisher = "Springer Verlag", isbn = " Online ISBN 978-3-540-70823-0 Series Title Mathematics and Visualization Series ISSN 1", url = "https://publications.utah.edu/publications/Bre2007b/Bremer_TopologyBasedMethInVis2006.pdf", } @InProceedings{SCI:Bro2007a, author = "D.H. Brooks and A. Keely and A. Ghodrati and G. Tadmor and R.S. MacLeod", title = "Some Spatio-Temporal Approaches to Inverse Electrocardiography", booktitle = "Proc. Asilomar Conf. on Signals, Systems, and Computers", year = "2007", month = "November", location = "Pacific Grove, CA", keywords = "inverse eeg, ncrr, cibc", url = "https://publications.utah.edu/publications/brooks07/Brooks_SSC2007.pdf", } @InProceedings{SCI:But2007a, author = "L. Butler and A.J. Stephens", title = "Bullet Ray Vision", booktitle = "Proceedings of the {IEEE} Symposium on Interactive Ray Tracing", pages = "167--170", year = "2007", keywords = "interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/butler07/BulletRayVision.pdf", } @Article{SCI:But2007b, author = "C.R. Butson and C.C. McIntyre", title = "Differences among implanted pulse generator waveforms cause variations in the neural response to deep brain stimulation", journal = "Clinical Neurophysiology", volume = "118", pages = "1889--1894", year = "2007", month = "August", issn = "1388-2457", url = "https://publications.utah.edu/publications/But2007b/Butson_ClinNeurophys2007.pdf", } @Article{SCI:But2007c, author = "C.R. Butson and S.E. Cooper and J.M. Henderson and C.C. McIntyre", title = "Patient-specific analysis of the volume of tissue activated during deep brain stimulation", journal = "NeuroImage", volume = "34", number = "2", pages = "661--670", year = "2007", month = "January", issn = "1053-8119", keywords = "Deep Brain Stimulation, Finite Element Analysis, Humans, Imaging, Three-Dimensional, Magnetic Resonance Imaging, Models, Neurological, Parkinson Disease, Parkinson Disease: therapy, Pyramidal Tracts, Pyramidal Tracts: physiology, Subthalamic Nucleus, Subthalamic Nucleus: physiology", url = "https://publications.utah.edu/publications/But2007c/Butson_NeuroImage2007.pdf", } @TechReport{SCI:Cal2007a, author = "M. Callahan and M.J. Cole and J.F. Shepherd and J.G. Stinstra and C.R. Johnson", title = "{BioMesh3D}: A Meshing Pipeline for Biomedical Models", number = "UUSCI-2007-009", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ncrr, biomesh3d", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-009.pdf", } @Article{SCI:Cal2007b, author = "M. Callahan and M.J. Cole and J.F. Shepherd and J.G. Stinstra and C.R. Johnson", title = "A Meshing Pipeline for Biomedical Computing", journal = "Engineering with Computers", pages = "(in press)", year = "2007", series = "Special Issue on Computational Bioengineering", url = "https://publications.utah.edu/publications/callahan07/Meshing-Pipeline07.pdf", } @Article{SCI:Cal2007c, author = "S.P. Callahan and L. Bavoil and V. Pascucci and C.T. Silva", title = "Progressive Volume Rendering of Large Unstructured Grids", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "1", pages = "1307-1314", year = "2007", } @Article{SCI:Cas2007b, author = "C.J. Cascio and G. Gerig and J. Piven", title = "Diffusion Tensor Imaging: Application to the Study of the Developing Brain", journal = "J Am Acad Child Adolesc Psychiatry", volume = "46", number = "2", pages = "213--223", year = "2007", month = "February", keywords = "ucnia", } @InProceedings{SCI:Cat2007a, author = "J. Cates and P.T. Fletcher and M. Styner and M. Shenton and R.T. Whitaker", title = "Shape Modeling and Analysis with Entropy-Based Particle Systems", booktitle = "Proceedings of Information Processing in Medical Imaging (IPMI) 2007", pages = "333--345", year = "2007", series = "LNCS 4584", url = "https://publications.utah.edu/publications/cates07/Cates-IPMI2007.pdf", } @Article{SCI:Chi2007a, author = "D. Chisnall and M. Chen and C.D. Hansen", title = "Ray-Driven Dynamic Working Set Rendering for Complex Volume Scene Graphs Involving Large Point Clouds", journal = "The Visual Computer", volume = "23", number = "3", pages = "167--179", year = "2007", url = "https://publications.utah.edu/publications/chisnall07/Chisnall_VisualComputer2007.pdf", } @Article{SCI:Cur2007a, author = "S. Curtis and R.M. Kirby and J.K. Ryan and C.-W. Shu", title = "Post-Processing for the Discontinuous Galerkin Method Over Non-Uniform Meshes", journal = "SIAM Journal of Scientific Computing", volume = "30", number = "1", pages = "272--289", year = "2007", url = "https://publications.utah.edu/publications/curtis07/Curtis_SIAM_J-Sci-Comp07.pdf", } @InProceedings{SCI:Dam2007a, author = "K. Damevski and K. Zhang and S.G. Parker", title = "Practical Parallel Remote Method Invocation for the Babel Compiler", booktitle = "Proceedings of the 2007 Symposium on Component and Framework Technology in High-Performance and Scientific Computing", pages = "131--140", year = "2007", url = "https://publications.utah.edu/publications/damevski07/compf05-damevski.pdf", } @InProceedings{SCI:Dam2007b, author = "K. Damevski and A. Swaminathan and S.G. Parker", title = "Highly Scalable Distributed Component Framework for Scientific Computing", booktitle = "Proceedings of the 3rd International Conference on High Performance Computing and Communication (HPCC 2007)", year = "2007", url = "https://publications.utah.edu/publications/damevski07/ccaloop.pdf", } @InProceedings{SCI:Dam2007c, author = "K. Damevski and A. Swaminathan and S.G. Parker", title = "CCALoop: Scalable Design of a Distributed Component Framework", booktitle = "Proceedings of the 16th International High Performance Distributed Computing Symposium (HPDC 2007)", pages = "213--214", year = "2007", } @InProceedings{SCI:Dan2007a, author = "J.D. Daniels and L. Ha and T. Ochotta and C.T. Silva", title = "Robust Smooth Feature Extraction from Point Clouds", booktitle = "Proceedings of the 2007 International Conference on Shape Modeling and Applications", year = "2007", location = "Lyon, France", url = "https://publications.utah.edu/publications/daniels07/DaHaOc07.pdf", } @InProceedings{SCI:Dav2007a, author = "B. Davis and P.T. Fletcher and E. Bullitt and S. Joshi", title = "Population Shape Regression From Random Design Data", booktitle = "Proceedings of the Eleventh {IEEE} International Conference on Computer Vision ({ICCV} '07)", pages = "1-7", year = "2007", } @Article{SCI:Dav2007b, author = "S. Davidson and S. Cohen-Boulakia and A. Eyal and B. Ludascher and T. McPhillips and S. Bowers and J. Freire", title = "Provenance in Scientific Workflow Systems", journal = "IEEE Data Engineering Bulletin", volume = "32", number = "4", pages = "44--50", year = "2007", keywords = "provenance, workflows, workflow management, vistrails", url = "https://publications.utah.edu/publications/davidson07/davidson-provenance-lebull-07.pdf", } @Article{SCI:Dou2007a, author = "C.C. Douglas and M.J. Cole and P. Dostert and Y. Efendiev and R.E. Ewing and G. Haase and J. Hatcher and M. Iskandarani and C.R. Johnson and R.A. Lodder", title = "Dynamically identifying and tracking contaminants in water bodies", journal = "Proceedings of the 7th International Conference on Computational Science ({ICCS}) 2007, Part I", volume = "4887", pages = "1002--1009", year = "2007", editor = "Y. Shi and G.D. van Albada and P.M.A. Sloot and J.J. Dongarra", series = "Lecture Notes in Computer Science ({LNCS})", publisher = "Springer-Verlag, Berlin Heidelberg", month = "May", location = "Beijing, China", url = "https://publications.utah.edu/publications/douglas07/Douglas_ICCS2007.pdf", } @Article{SCI:Dou2007b, author = "C.C. Douglas and D. Bansal and J.D. Beezley and L.S. Bennethum and S. Chakraborty and J.L. Coen and Y. Efendiev and R.E. Ewing and J. Hatcher and M. Iskandarani and C.R. Johnson and M. Kim and D. Li and R.A. Lodder and J. Mandel and G. Qin and A. Vodacek", title = "Dynamic data-driven application systems for empty houses, contaminat tracking, and wildland fireline prediction", journal = "Grid-Based Problem Solving Environments", pages = "255-272", year = "2007", editor = "P.W. Gaffney and J.C.T. Pool", series = "IFIP series", publisher = "Springer-Verlag, Berlin", url = "https://publications.utah.edu/publications/douglas07/Douglas_GBPSE2007.pdf", } @Article{SCI:Fle2007a, author = "P.T. Fletcher and S. Joshi", title = "Riemannian Geometry for the Statistical Analysis of Diffusion Tensor Data", journal = "Signal Processing", volume = "87", number = "2", pages = "250--262", year = "2007", month = "February", keywords = "diffusion tensor,", url = "https://publications.utah.edu/publications/fletcher07/FletcherTensorStatsSP.pdf", } @Article{SCI:Fle2007b, author = "P.T. Fletcher and R. Tao and W.-K. Jeong and R.T. Whitaker", title = "A Volumetric Approach to Quantifying Region-to-Region White Matter Connectivity in Diffusion Tensor MRI", journal = "Information Processing in Medical Imaging", volume = "4584/2007", pages = "346--358", year = "2007", keywords = "tensor field methods, diffusion tensor imaging, neuro brain", } @InCollection{SCI:Fle2007c, author = "P.T. Fletcher and S. Powell and N.L. Foster and S. Joshi", title = "Quantifying Metabolic Asymmetry Modulo Structure in Alzheimer's Disease", booktitle = "Lecture Notes in Computer Science", pages = "446--457", year = "2007", publisher = "Springer", keywords = "alzheimers", } @InProceedings{SCI:Fri2007a, author = "H. Friedrich and I. Wald and P. Slusallek", title = "Interactive Iso-Surface Ray Tracing of Massive Volumetric Data Sets", booktitle = "Proceedings of the 2007 Eurographics Symposium on Parallel Graphics and Visualization", pages = "109--116", year = "2007", keywords = "volume rendering, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter, large dataset visualization", url = "https://publications.utah.edu/publications/friedrich07/async.pdf", } @InProceedings{SCI:Gar2007a, author = "C. Garth and G. Li and X. Tricoche and C.D. Hansen and H. Hagen", title = "Visualization of Coherent Structures in Transient 2D Flows", booktitle = "Proceedings of the 2007 Workshop on Topology-Based Method in Visualization (TopoInVis)", year = "2007", month = "March", location = "Grimma, Germany", keywords = "csafe c-safe", url = "https://publications.utah.edu/publications/garth07/topoinvis07.pdf", } @InProceedings{SCI:Gar2007b, author = "C. Garth and F. Gerhardt and X. Tricoche and H. Hagen", title = "Efficient Computation and Visualization of Coherent Structures in Fluid Flow Applications", booktitle = "Proceeding of {IEEE} Visualization 2007", pages = "1464--1471", year = "2007", keywords = "vacet, cfd computational fluid dynamics, aerodynamics", url = "https://publications.utah.edu/publications/garth07/garth-vis07.pdf", } @InCollection{SCI:Gar2007c, author = "C. Garth and B. Laramee and X. Tricoche and H. Hauser and J. Schneider", title = "Extraction and Visualization of Swirl and Tumble Motion from Engine Simulation Data", booktitle = " Topology-based Methods in Visualization", pages = "121--135", year = "2007", series = "Mathematics and Visualization", publisher = "Springer Berlin Heidelberg", isbn = "978-3-540-70822-3", url = "https://publications.utah.edu/publications/Gar2007c/Garth_TopoInVis2007.pdf", } @Article{SCI:Gen2007a, author = "S.E. Geneser and R.M. Kirby and D. Xiu and F.B. Sachse", title = "Stochastic Markovian Modeling of Electrophysiology of Ion Channels: Reconstruction of Standard Deviations in Macroscopic Currents", journal = "Journal of Theoretical Biology", volume = "245", number = "4", pages = "627--637", year = "2007", keywords = "Stochastic Galerkin, Polynomial chaos, Stochastic processes, Markov modeling, Ion channels", url = "https://publications.utah.edu/publications/geneser07/Kirby-20.pdf", } @InProceedings{SCI:Ger2007a, author = "S. Gerber and T. Tasdizen and R.T. Whitaker", title = "Robust Non-linear Dimensionality Reduction using Successive 1-Dimensional Laplacian Eigenmaps", booktitle = "Proceedings of the 2007 International Conference on Machine Learning (ICML)", pages = "281--288", year = "2007", keywords = "crcns", url = "https://publications.utah.edu/publications/gerber07/Gerber_ICML2007.pdf", } @Article{SCI:Gho2007a, author = "A. Ghodrati and D.H. Brooks and R.S. MacLeod", title = "Methods of Solving Reduced Lead Systems for Inverse Electrocardiography", journal = "{IEEE} Trans Biomed Eng", volume = "54", number = "2", pages = "339--343", year = "2007", month = "February", keywords = "ncrr, cibc", url = "https://publications.utah.edu/publications/ghodrati07/Ghodrati_TBE2007.pdf", } @Article{SCI:Gil2007a, author = "J.H. Gilmore and W. Lin and I. Corouge and Y.S. Vetsa and J.K. Smith and C. Kang and H. Gu and R.M. Hamer and J.A. Lieberman and G. Gerig", title = "Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography", journal = "American Journal of Neuroradiology", volume = "28", number = "9", pages = "1789--1795", year = "2007", month = "October", url = "https://publications.utah.edu/publications/gilmore07/Gilmore_AJNR_Oct2007.pdf", } @Article{SCI:Gil2007b, author = "J.H. Gilmore and W. Lin and M.W. Prastawa and C.B. Looney and Y.S.K. Vetsa and R.C. Knickmeyer and D.D. Evans and J.K. Smith and R.M. Hamer and J.A. Lieberman and G. Gerig", title = "Regional Gray Matter Growth, Sexual Dimorphism, and Cerebral Asymmetry in the Neonatal Brain", journal = "Journal of Neuroscience", volume = "27", number = "6", pages = "1255--1260", year = "2007", url = "https://publications.utah.edu/publications/gilmore07/JN-12-1-06.pdf", } @InProceedings{SCI:Gil2007c, author = "J.H. Gilmore and L. Smith and C. Kang and R. Hamer and H. Wolfe and B. Hertzberg and J.K. Smith and N. Chescheir and W. Lin and G. Gerig", title = "Neonatal Brain Structure in Children with Prenatal Isolated Mild Ventriculomegaly", booktitle = "Proceedings American Conference of Neuropharmacology (ACNP) 2007", year = "2007", location = "Boca Raton, FL", note = "abstract.", } @Article{SCI:Gil2007d, author = "J.H. Gilmore and W. Lin and M.W. Prastawa and C.B. Looney and Y.S.K. Vetsa and R.C. Knickmeyer and D.D. Evans and J.K. Smith and R.M. Hamer and J.A. Lieberman and G. Gerig", title = "Regional Gray Matter Growth, Sexual Dimorphism, and Cerebral Asymmetry in the Neonatal Brain", journal = "Journal of Neuroscience", volume = "27", number = "6", pages = "1255--1260", year = "2007", keywords = "ucnia", } @InProceedings{SCI:Goo2007a, author = "C. Goodlett and P.T. Fletcher and W. Lin and G. Gerig", title = "Quantification of Measurement Error in DTI: Theoretical Predictions and Validation", booktitle = "Proceedings of The 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007)", volume = "4792", pages = "10--17", year = "2007", series = "Lecture Notes in Computer Science", month = "November", keywords = "tensor field methods, diffusion tensor imaging", } @Article{SCI:Goo2007b, author = "C.E. Goodyer and M. Berzins", title = "Parallelisation and Scalability Issues of a Multilevel EHL Solver", journal = "Concurrency and Computation: Practice and Experience", volume = "19", number = "4", pages = "369--396", year = "2007", url = "https://publications.utah.edu/publications/goodyer07/Goodyer_EHLsolver.pdf", } @InProceedings{SCI:Goo2007c, author = "C.B. Goodlett and P.T. Fletcher and W. Lin and G. Gerig", title = "Noise-Induced Bias in Low-Direction Diffusion Tensor {MRI}: Replication of Monte-Carlo Simulation with In-Vivo Scans", booktitle = "Proceedings of {ISMRM} 2007", year = "2007", } @InProceedings{SCI:Gor2007a, author = "K. Gorczowski and M. Styner and J.Y. Jeong and J.S. Marron and J. Piven and H.C. Hazlett and S.M. Pizer and G. Gerig", title = "Statistical Shape Analysis of Multi-Object Complexes", booktitle = "Proceedings of the 2007 {IEEE} Conference on Computer Vision and Pattern Recognition", pages = "1--8", year = "2007", url = "https://publications.utah.edu/publications/gorczowski07/Gorczowski_CVPR2007a.pdf", } @InProceedings{SCI:Gor2007b, author = "K. Gorczowski and M. Stynera and J.Y. Jeonga and J.S. Marron and J. Piven and H.C. Hazlett and S.M. Pizer and G. Gerig", title = "Discrimination Analysis using Multi-Object Statistics of Shape and Pose", booktitle = "Proceedings of the 2007 SPIE Conference", volume = "6512", year = "2007", month = "January", } @InProceedings{SCI:Gou2007a, author = "S. Gouttard and M. Styner and S. Joshi and R.G. Smith and H.C. Hazlett and G. Gerig", title = "Subcortical Structure Segmentation Using Probabilistic Atlas Priors", booktitle = "Medical Imaging 2007: Image Processing", volume = "6512", number = "65122J", year = "2007", editor = "J.P. W. Pluim and J.M. Reinhardt", publisher = "SPIE Intl Soc Optical Eng", month = "March", note = "Presented at Worshop - 3D Segmentation in the Clinic: a Grand Challenge", keywords = "neuro brain, brain atlasing", url = "https://publications.utah.edu/publications/Gou2007a/MICCAI07_SegmentationWorkshop.pdf", } @InProceedings{SCI:Gri2007a, author = "C.P. Gribble and S.G. Parker", title = "Interactive Visualization with Advanced Shading Models using Lazy Evaluation", booktitle = "Proceedings of the 2007 Eurographics Symposium on Parallel Graphics and Visualization", pages = "37--44", year = "2007", keywords = "interactive rt distributed interactive ray tracing dirt, rtcenter", } @Article{SCI:Gri2007b, author = "C.P. Gribble and C. Brownlee and S.G. Parker", title = "Practical Global Illumination for Interactive Particle Visualization", journal = "Computers and Graphics", volume = "32", number = "1", pages = "14--24", year = "2007", month = "February", } @Article{SCI:Gyu2007a, author = "A. Gyulassy and V. Natarajan and B. Hamann and V. Pascucci", title = "Efficient Computation of Morse-Smale Complexes for Three-dimensional Scalar Functions", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2007", note = "(presented at IEEE VIS 2007)", } @Article{SCI:Gyu2007b, author = "A. Gyulassy and V. Natarajan and B. Hamann and M. Duchaineau and V. Pascucci and E. Bringa and A. Higginbotham", title = "Topologically Clean Distance Fields", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2007", note = "(presented at IEEE VIS 2007)", } @Article{SCI:Ham2007a, author = "C.W. Hamman and R.M. Kirby and M. Berzins", title = "Parallelization and Scalability of a Spectral Element Channel Flow Solver for Incompressible Navier-Stokes Equations", journal = "Concurrency and Computation: Practice and Experience", volume = "14", number = "10", pages = "1403--1422", year = "2007", keywords = "parallel processing, scaling, spectral element solver, , parallel processing", url = "https://publications.utah.edu/publications/hamman07/hammankirbyberzins07.pdf", } @Article{SCI:Ham2007b, author = "C.R. Hamman and R.M. Kirby and M. Berzins", title = "Parallel Direct Simulation of Incompressible Navier Stokes Equations", journal = "Concurrency and Computation", volume = "19", number = "10", pages = "1403-1427", year = "2007", keywords = "cfd computational fluid dynamics, fluid structure problems, parallel visualization", url = "https://publications.utah.edu/publications/hamman07/Kirby-21.pdf", } @Article{SCI:Hen2007a, author = "H.B. Henninger and C.J. Underwood and S.A. Maas and R.T. Whitaker and J.A. Weiss", title = "Spatial Distribution and Orientation of Dermatan Sulfate in Human Medial Collateral Ligament", journal = "Journal of Structural Biology", volume = "158", number = "1", pages = "33--45", year = "2007", month = "April", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/Hen2007a/henninger_j_struct_biol_2007.pdf", } @Article{SCI:Hua2007a, author = "X. Huang and Y.Z. Lee and M. McKeown and G. Gerig and H. Gu and W. Lin and M.M. Lewis and S. Ford and A.I. Troster and D.R. Weinberger and Styner", title = "Asymmetrical ventricular enlargement in Parkinson's Disease", journal = "Movement Disorders", volume = "22", number = "11", pages = "1657--1660", year = "2007", month = "August 15", keywords = "cardiac, heart, parkinsons disease", url = "https://publications.utah.edu/publications/huang07/Huang_MovDisord_Aug2007.pdf", } @PhdThesis{SCI:Iki2007a, author = "M. Ikits", title = "Interactive Exploration of Volumetric Data Sets With a Combined Visual and Haptic Interface", year = "2007", school = "University of Utah School of Computing", note = "Ph.D. Thesis", keywords = "visual haptic workbench, vr virtual reality haptics, Ph.D. Thesis, ph.d. thesis", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-005.pdf", } @InProceedings{SCI:Ize2007a, author = "T. Ize and I. Wald and S.G. Parker", title = "Asynchronous BVH Construction for Ray Tracing Dynamic Scenes on Parallel Multi-Core Architectures", booktitle = "Proceedings of the 2007 Eurographics Symposium on Parallel Graphics and Visualization", pages = "101--108", year = "2007", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/ize07/async.pdf", } @InProceedings{SCI:Ize2007b, author = "T. Ize and P. Shirley and S.G. Parker", title = "Grid Creation Strategies for Efficient Ray Tracing", booktitle = "Proceedings of the 2007 {IEEE}/Eurographics Symposium on Interactive Ray Tracing", pages = "27--32", year = "2007", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/ize07/rgrid.pdf", } @Article{SCI:Jeo2007a, author = "W.-K. Jeong and P.T. Fletcher and R. Tao and R.T. Whitaker", title = "Interactive Visualization of Volumetric White Matter Connectivity in {DT-MRI} Using a Parallel-Hardware Hamilton-Jacobi Solver", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "13", number = "6", pages = "1480--1487", year = "2007", keywords = "volume rendering, diffusion tensor imaging, parallel visualization", url = "https://publications.utah.edu/publications/jeong07/Jeong_vis07.pdf", } @Unpublished{SCI:Joh2007a, author = "C.R. Johnson and R. Ross and S. Ahern and J. Ahrens and W. Bethel and K.L. Ma and M. Papka and J. van Rosendale and H.W. Shen and J. Thomas", title = "{DOE} Visualization and Knowledge Discovery", year = "2007", month = "October", note = "Report from the {DOE/ASCR Workshop on Visual Analysis and Data Exploration at Extreme Scale}", url = "https://publications.utah.edu/publications/Joh2007a/DOE-Visualization-Report-2007.pdf", } @Article{SCI:Jol2007a, author = "M. Jolley and J.G. Stinstra and D.M. Weinstein and S. Pieper and R.S.J. Estepar and G. Kindlmann and R.S. MacLeod and D.H. Brooks and J.K. Triedman", title = "Open-Source Environment for Interactive Finite Element Modeling of Optimal ICD Electrode Placement", journal = "Functional Imaging and Modeling of the Heart", volume = "4466/2007", pages = "373--382", year = "2007", series = "Lecture Notes in Computer Science (LCNS)", isbn = "978-3-540-72906-8", url = "https://publications.utah.edu/publications/jolley07/jolleyFIMH07.pdf", } @InProceedings{SCI:Jon2007a, author = "B.W. Jones and R.E. Marc and C.B. Watt and K. Kinardi and D. DeMill and J.H. Yang and T. Tasdizen and P. Koshevoy and E. Jurrus and R.T. Whitaker", title = "Structure and Function of Microneuromas in Retinal Remodeling", booktitle = "The Association for Research in Vision and Ophthalmology (ARVO) Conference", year = "2007", note = "(abstract)", keywords = "crcns", url = "https://publications.utah.edu/publications/jones07/ARVO2007_BWJones_poster_FINAL 2_small.pdf", } @Article{SCI:Jon2007b, author = "C. Jones and K.-L. Ma and A.R. Sanderson and L. Myers", title = "Visual Interrogation of Gyrokinetic Particle Simulations", journal = "Journal of Physics", volume = "78", pages = "012033 (6pp)", year = "2007", series = "Conference Series", keywords = "fusion tokamak, particle physics", url = "https://publications.utah.edu/publications/jones07/Jones_JPhys2007.pdf", } @Article{SCI:Kin2007a, author = "G. Kindlmann and D.B. Ennis and R.T. Whitaker and C.-F. Westin", title = "Diffusion Tensor Analysis With Invariant Gradients and Rotation Tangents", journal = "{IEEE} Transactions on Medical Imaging", volume = "26", number = "11", pages = "1483--1499", year = "2007", keywords = "DTI, diffusion tensor imaging", url = "https://publications.utah.edu/publications/kindlmann07/Kindlmann_TMI2007.pdf", } @Article{SCI:Kir2007a, author = "R.M. Kirby and Z. Yosibash and G.E. Karniadakis", title = "Towards Stable Coupling Methods for High-Order Discretizations of Fluid-Structure Interaction: Algorithms and Observations", journal = "Journal of Computational Physics", volume = "223", number = "2", pages = "489--518", year = "2007", keywords = "computational mechanics, fluid structure problems", url = "https://publications.utah.edu/publications/kirby07/Kirby-19.pdf", } @Article{SCI:Kni2007a, author = "J.M. Kniss and W. Hunt and K. Potter and P. Sen", title = "{IStar:} A Raster Representation for Scalable Image and Volume Data", journal = "{IEEE} Transactions on Visualization and Computer Graphics ({TVCG})", volume = "13", number = "6", pages = "1424--1431", year = "2007", month = "Nov", url = "https://publications.utah.edu/publications/Kni2007a/Kniss_TVCG2007.pdf", } @TechReport{SCI:Kno2007a, author = "A. Knoll and C.D. Hansen and I. Wald", title = "Coherent Multiresolution Isosurface Ray Tracing", number = "UUSCI-2007-001", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "vacet", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-001.pdf", } @TechReport{SCI:Kno2007b, author = "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald and H. Hagen", title = "Interactive Ray Tracing of Arbitrary Implicit Functions", number = "UUSCI-2007-002", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "interactive rt distributed interactive ray tracing dirt, vacet", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-002.pdf", } @InProceedings{SCI:Kno2007c, author = "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald and H. Hagen", title = "Interactive Ray Tracing of Arbitrary Implicits with {SIMD} Interval Arithmetic", booktitle = "Proceedings of 2nd {IEEE/EG} Symposium on Interactive Ray Tracing 2007", pages = "11--18", year = "2007", location = "Ulm, Germany", keywords = "parallel visualization, interactive ray tracing", url = "https://publications.utah.edu/publications/knoll07/rtia-rt07.pdf", } @TechReport{SCI:Kno2007d, author = "A. Knoll and Y. Hijazi and A. Kensler and M. Schott and C.D. Hansen and H. Hagen", title = "Fast and Robust Ray Tracing of General Implicits on the GPU", number = "UUSCI-2007-014", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ray tracing, GPU", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-014.pdf", } @TechReport{SCI:Kos2007a, author = "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker", title = "Automatic Assembly of TEM Mosaics and Mosaic Stacks Using Phase Correlation", number = "UUSCI-2007-004", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, warping, deformable image registration, ip gp image processing goemetry processing, crcns", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-004.pdf", } @Article{SCI:Kri2008b, author = "L. Krishnan and J.B. Hoying and H. Ngyuen and H. Song and J.A. Weiss", title = "Interaction of Angiogenic Microvessels with the Extracellular Matrix", journal = "American Journal of Physiology: Heart and Circulation Physiology", volume = "293", number = "6", pages = "H3650--H36588", year = "2007", } @Article{SCI:Lan2007a, author = "D. Laney and P.-T. Bremer and A. Mascarenhas and P. Miller and V. Pascucci", title = "Understanding the Structure of the Turbulent Mixing Layer in Hydrodynamic Instabilities", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "1", pages = "1053--1060", year = "2007", month = "January", } @InProceedings{SCI:Lew2007a, author = "S. Lew and C. Wolters and A. Anwander and S. Makeig and R.S. MacLeod", title = "Low Resolution Conductivity Estimation to Improve Source Localization", booktitle = "New Frontiers in Biomagnetism. Proceedings of the 15th International Conference on Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006.", volume = "1300", pages = "149--152", year = "2007", series = "International Congress Series", month = "June", keywords = "forward problems inverse problems forward simulation inverse solutions, source localization, ncrr", url = "https://publications.utah.edu/publications/lew07/Lew_ICB2006.pdf", } @TechReport{SCI:Li2007a, author = "G.-S. Li and X. Tricoche and C.D. Hansen", title = "Visualizing Unsteady Flows on Surfaces Using Spherical Parameterization", number = "UUSCI-2007-013", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "vector field methods, cardiac heart, bioelectric fields", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-013.pdf", } @InCollection{SCI:Liv2007a, author = "Y. Livnat and S.G. Parker and C.R. Johnson", title = "Fast Isosurface Extraction Methods for Large Image Data Sets", booktitle = "Handbook of Medical Imaging: Processing and Analysis", year = "2007", editor = "Isaac Bankman", chapter = "44", publisher = "Academic Press", edition = "2nd Edition", keywords = "isosurface extraction, large dataset visualization", url = "https://publications.utah.edu/publications/livnat07/Livnat_Handbook_MI_Ch44.pdf", } @Article{SCI:Lui2007a, author = "J. Luitjens and M. Berzins and T.C. Henderson", title = "Parallel Space Filling Curve Generation Through Sorting", journal = "Journal of Concurrency and Computation", volume = "19", number = "10", pages = "1387--1402", year = "2007", url = "https://publications.utah.edu/publications/luitjens07/Concurrency2007JL.pdf", } @InCollection{SCI:Lui2007b, author = "J. Luitjens and B. Worthen and M. Berzins and T.C. Henderson", title = "Scalable Parallel AMR for the Uintah Multiphysics Code", booktitle = "Petascale Computing Algorithms and Applications", year = "2007", editor = "D. Bader", publisher = "Chapman and Hall/CRC", keywords = "uintah", url = "https://publications.utah.edu/publications/luitjens07/2008_Luitjens_UintahMultiphysicsCode.pdf", } @Article{SCI:Lui2007c, author = "J. Luitjens and M. Berzins and T. Henderson", title = "Parallel space-filling curve generation through sorting", journal = "Concurrency and Computation: Practice and Experience", volume = "19", number = "10", pages = "1387--1402", year = "2007", month = "July", url = "https://publications.utah.edu/publications/Lui2007c/Luitjens_CCPE2007.pdf", } @Article{SCI:Luj2007a, author = "T.J. Lujan and M.S. Dalton and B.M. Thompson and B.J. Ellis and J.A. Weiss", title = "Effect of ACL Deficiency on MCL Strains and Joint Kinematics", journal = "Journal of Biomechanical Engineering", volume = "129", number = "3", pages = "386--392", year = "2007", url = "https://publications.utah.edu/publications/lujan07/lujan_jbme_2007.pdf", } @Article{SCI:Luj2007b, author = "T.J. Lujan and C.J. Underwood and H.B. Henninger and B.M. Thompson and J.A. Weiss", title = "Effect of Dermatan Sulfate Glycosaminoglycans on the Quasi-Static Material Properties of the Human Medial Collateral Ligament", journal = "Journal of Orthopaedic Research", volume = "25", number = "7", pages = "894--903", year = "2007", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/lujan07/lujan_JOR_2007.pdf", } @Article{SCI:Mal2007a, author = "M. Malik and Y. Birnbaum and R.S. MacLeod and V. Shusterman", title = "Markers of impaired repolarization", journal = "Journal of Electrocardiology", volume = "40", number = "1", pages = "S54--S57", year = "2007", month = "January", } @Article{SCI:Mey2007a, author = "M.D. Meyer and B. Nelson and R.M. Kirby and R.T. Whitaker", title = "Particle Systems for Efficient and Accurate Finite Element Visualization", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "5", pages = "1015--1026", year = "2007", keywords = "finite elements, particle systems", url = "https://publications.utah.edu/publications/meyer07/tvcg07meyer.pdf", } @Article{SCI:Mey2007b, author = "M.D. Meyer and R.M. Kirby and R.T. Whitaker", title = "Topology, Accuracy, and Quality of Isosurface Meshes Using Dynamic Particles", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "6", pages = "1704--1711", year = "2007", publisher = "IEEE", month = "Nov", keywords = "scalar field methods", url = "https://publications.utah.edu/publications/Mey2007b/vis07meyer.pdf", } @InProceedings{SCI:Nai2007a, author = "D. Nain and M. Styner and M. Niethammer and J.J. Levitt and M.E. Shenton and G. Gerig and A. Bobick and A. Tannenbaum", title = "Statistical Shape Analysis of Brain Structures Using Spherical Wavelets", booktitle = "Proceedings of the 4th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro ({ISBI} 2007)", pages = "209--212", year = "2007", publisher = "{IEEE} Press", url = "https://publications.utah.edu/publications/nain07/Nain_ISBI2007a.pdf", } @Article{SCI:Nem2007a, author = "O. Nemitz and T. Tasdizen and M. Rumpf and R.T. Whitaker", title = "Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data", journal = "Journal of Mathematical Imaging and Vision", volume = "7", number = "3", pages = "217--229", year = "2007", keywords = "cardiac heart", } @Article{SCI:New2007a, author = "E.P. Newren and A.L. Fogelson and R.D. Guy and R.M. Kirby", title = "Unconditionally Stable Discretizations of the Immersed Boundary Equations", journal = "Journal of Computational Physics", volume = "222", number = "2", pages = "702--719", year = "2007", url = "https://publications.utah.edu/publications/newren07/Kirby-18.pdf", } @Article{SCI:New2007b, author = "E.P. Newren and A.L. Fogelson and R.D. Guy and R.M. Kirby", title = "Unconditionally Stable Discretizations of the Immersed Boundary Equations", journal = "Journal of Computational Physics", volume = "222", number = "2", pages = "702--719", year = "2007", month = "March", } @TechReport{SCI:Och2007a, author = "T. Ochotta and C.E. Scheidegger and J. Schreiner and Y. Lima and R.M. Kirby and C.T. Silva", title = "A Unified Projection Operator for Moving Least Squares Surfaces", number = "UUSCI-2007-006", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-006.pdf", } @Article{SCI:Omb2007a, author = "L. Omberg and G.H. Golub and O. Alter", title = "A Tensor Higher-Order Singular Value Decomposition for Integrative Analysis of DNA Microarray Data From Different Studies", title_url = "http://www.alterlab.org/HOSVD/", journal = "Proceedings of the National Academy of Sciences", volume = "104", number = "47", pages = "18371–-18376", year = "2007", publisher = "Proceedings of the National Academy of Sciences", month = "November", url = "https://publications.utah.edu/publications/Omb2007a/PNAS-2007-Omberg-18371-6.pdf", } @InProceedings{SCI:Pal2007a, author = "R. Palmer and G. Gopalakrishnan and R.M. Kirby", title = "Semantics Driven Dynamic Partial-Order Reduction of MPI-based Parallel Programs", booktitle = "Proceedings of Parallel and Distributed Systems: Testing and Debugging (PADTAD)", year = "2007", location = "London, UK", note = "Awarded Best Paper", keywords = "parallel visualization", } @InProceedings{SCI:Par2007a, author = "S.G. Parker and S. Boulos and J. Bigler and A. Robison", title = "RTSL: a Ray Tracing Shading Language", booktitle = "In 2007 {IEEE}/Eurographics Symposium on Interactive Ray Tracing", pages = "149--160", year = "2007", keywords = "rt ray tracing", } @Article{SCI:Par2007b, author = "S.G. Parker and R. Armstrong and D. Bernholdt and T. Dahlgren and T. Epperly and J. Kenny and M. Krishnan and G. Kumfert and J. Larson and L.C. McInnes and J. Nieplocha and J. Ray and S. Shasharina", title = "Enabling Advanced Scientific Computing Software", journal = "CTWatch Quarterly", volume = "3", number = "4", year = "2007", } @Article{SCI:Pas2007a, author = "V. Pascucci and G. Scorzelli and P.-T. Bremer and A. Mascarenhas", title = "Robust On-line Computation of Reeb Graphs: Simplicity and Speed", journal = "ACM Transactions on Graphics: ACM SIGGRAPH 2007 Papers", pages = "1057--1066", year = "2007", publisher = "ACM Press", address = "New York, NY, USA", } @InProceedings{SCI:Per2007a, author = "S. Pervez and G. Gopalakrishnan and R.M. Kirby and R. Palmer and R. Thakur and W. Gropp", title = "Practical Model Checking Method for Verifying Correctness of MPI Programs", booktitle = "Recent Advances in Parallel Virtual Machine and Message Passing Interface - Proceedings of EuroPVM-MPI 2007", volume = "4757/2007", pages = "344--353", year = "2007", location = "Paris, France", } @Article{SCI:Pha2007a, author = "N.S. Phatak and Q. Sun and S.-E. Kim and D.L. Parker and R.K. Sanders and A.I. Veress and B.J. Ellis and J.A. Weiss", title = "Noninvasive Determination of Ligament Strain with Deformable Image Registration", journal = "Annals of Biomedical Engineering", volume = "35", number = "7", pages = "1175--1187", year = "2007", month = "February", keywords = "mrl", url = "https://publications.utah.edu/publications/phatak07/phatak_abme_2007.pdf", } @Article{SCI:Por2007a, author = "A.B. Porter and L. Healy and N.L. Foster and K.A. Josephs", title = "Compulsive Urination as a Presenting Symptom of Frontotemporal Dementia", journal = "European Journal of Neurology", volume = "14", pages = "e16--e17", year = "2007", note = "Letter to the Editor", keywords = "neuro brain, dementia", url = "https://publications.utah.edu/publications/porter07/compulsive_urination.pdf", } @InProceedings{SCI:Pre2007a, author = "G.A. Preston and E.W. Anderson and C.T. Silva", title = "Effects of 10 Hz rTMS on Alpha Spectral Dynamics and Working Memory Performance", booktitle = "Proceedings of Neuroscience 2007 Poster Session", year = "2007", note = "Poster presentation.", } @Unpublished{SCI:Ree2007a, author = "D. Reed and C.R. Johnson", title = "{CRA-NIH} Computing Research Challenges in Biomedicine Workshop Recommendations", year = "2007", note = "Computing Research Association (CRA)", url = "https://publications.utah.edu/publications/Ree2007a/CRA-NIH-Workshop-Recommendations-Final.pdf", } @TechReport{SCI:Sad2007a, author = "N. Sadeghi and T. Tasdizen and N.L. Foster and A.Y. Wang and S. Minoshima and A.P. Lieberman.", title = "Automatic Classification of Alzheimers Disease vs. Frontotemporal Dementia: A Decision Tree Approach with FDG-PET", number = "UUSCI-2007-016", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "alzheimers, dementia, automatic disease classification, decision trees", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-016.pdf", } @InProceedings{SCI:Sch2007b, author = "C.E. Scheidegger and H.T. Vo and D. Koop and J. Freire and C.T. Silva", title = "Querying and Creating Visualizations by Analogy", booktitle = "Proceeding of {IEEE} Visualization 2007", pages = "1560--1567", year = "2007", keywords = "vistrails, vacet", url = "https://publications.utah.edu/publications/scheidegger07/vis_by_analogy.pdf", } @PhdThesis{SCI:She2007b, author = "J.F. Shepherd", title = "Topologic and Geometric Constraint-Based Hexahedral Mesh Generation", year = "2007", school = "School of Computing, University of Utah", month = "May", keywords = "meshing, mesh generation", url = "https://publications.utah.edu/publications/shepherd07/thesis.pdf", } @TechReport{SCI:She2007c, author = "J.F. Shepherd and C.R. Johnson", title = "Hexahedral Mesh Generation for Biomedical Models in SCIRun", number = "UUSCI-2007-008", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scirun, ncrr, mesh generation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-008.pdf", } @Article{SCI:Sho2007a, author = "S. Shome and R.L. Lux and B.B. Punske and R.S. MacLeod", title = "Ischemic Preconditioning Protects Against Arrhythmogenesis Through Maintenance of Both Active as well as Passive Electrical Properties in Ischemic Canine Hearts", journal = "Journal of Electrocardiology", volume = "40", number = "6 supp", pages = "S150--S159", year = "2007", month = "Nov-Dec", } @Article{SCI:Sho2007b, author = "S. Shome and J.G. Stinstra and C Henriquez and R.S. Macleod", title = "Influence of Extracellular Potassium and Reduced Extracellular Space on Conduction Velocity During Acute Ischemia: A Simulation Study", journal = "Journal of Electrocardiology", volume = "40", number = "4", pages = "S5--S6", year = "2007", } @Article{SCI:Sil2007a, author = "C.T. Silva and J. Freire and S.P. Callahan", title = "Provenance for Visualizations: Reproducibility and Beyond", journal = "IEEE Computing in Science and Engineering", volume = "9", number = "5", pages = "82--89", year = "2007", keywords = "vistrails, provenance, workflow management", url = "https://publications.utah.edu/publications/silva07/Silva_ProvenanceForVis.pdf", } @InProceedings{SCI:Sti2007a, author = "J.G. Stinstra and M. Jolley and M. Callahan and D.M. Weinstein and M. Cole and D.H. Brooks and J. Triedman and R.S. MacLeod", title = "Evaluation of Different Meshing Algorithms in the Computation of Defibrillation Thresholds in Children", booktitle = "Proceedings of the 29th Annual International Conference of the {IEEE} {EMBS}", pages = "1422--1425", year = "2007", url = "https://publications.utah.edu/publications/stinstra07/Stinstra_IEEEEMBS2007.pdf", } @InProceedings{SCI:Sty2007a, author = "M. Styner and S. Xu and M. El-Sayed and G. Gerig", title = "Correspondence Evaluation in Local Shape Analysis and Structural Subdivision", booktitle = "Proceedings of {ISBI} 2007", pages = "1192--1195", year = "2007", publisher = "IEEE Press", url = "https://publications.utah.edu/publications/styner07/Styner_ISBI2007a.pdf", } @InProceedings{SCI:Sty2007b, author = "M. Styner and I. Oguz and S. Xu and D. Pantazis and G. Gerig", title = "Statistical Group Differences in Anatomical Shape Analysis using Hotelling T2 Metric", booktitle = "Proceedings of the 2007 SPIE Medical Imaging Conference", volume = "6512", year = "2007", } @Article{SCI:Tay2007a, author = "W.D. Taylor and J.R. MacFall and G. Gerig and K.R. Krishnan", title = "Structural Integrity of the Uncinate Fasciculus in Geriatric Depression: Relationship with Age of Onset", journal = "Neuropsychiatric Disease and Treatment", volume = "3", number = "5", pages = "669--674", year = "2007", url = "https://publications.utah.edu/publications/taylor2007a/Taylor_NDT2007.pdf", } @InProceedings{SCI:Ter2007a, author = "T.B. Terriberry and J.N. Damon and S.M. Pizer and S. Joshi and G. Gerig", title = "Population-Based Fitting of Medial Shape Models with Correspondence Optimization", booktitle = "Proceedings of Information Processing in Medical Imaging (IPMI '07)", volume = "20", pages = "700--712", year = "2007", series = "Lecture Notes in Computer Science", month = "July", keywords = "neuro brain, brain atlasing", } @TechReport{SCI:Tra2007a, author = "L.T. Tran and J. Kim and M. Berzins", title = "Solving Time-Dependent PDEs using the Material Point Method, A Case Study from Gas Dynamics", number = "UUSCI-2007-010", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "mpm particle method, error estimates", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-010.pdf", } @InProceedings{SCI:Tri2007a, author = "J.K. Triedman and M. Jolley and R.S. MacLeod and J.G. Stinstra and D.H. Brooks and S. Pieper", title = "A System for Image Based Finite Element Modeling of Novel Defibrillation Strategies", booktitle = "Life Science Systems and Applications Workshop, 2007. LISA 2007", pages = "63--66", year = "2007", url = "https://publications.utah.edu/publications/triedman07/Triedman_LISSA2007.pdf", } @InProceedings{SCI:Tri2007c, author = "J.K. Triedman and M. Jolley and R.S. MacLeod and J. Stinstra and D.H. Brooks and S. Pieper", title = "Finite Element Modeling of Novel Defibrillation Approaches in Children and Adults", booktitle = "Proc. LISSA Conf.", year = "2007", month = "November", location = "Bethesda, MD", keywords = "ncrr, cibc", } @Article{SCI:Vas2007a, author = "S.X. Vasquez and A.N. Bahadur and J.T. Johnson III and D.R. Rodriguez and C. Keller", title = "Severe Runting of a Laboratory Mouse (Mus musculus)", journal = "Lab Animal", volume = "36", number = "1", pages = "19, 22--23", year = "2007", month = "January", } @Article{SCI:Vo2007a, author = "H.T. Vo and S.P. Callahan and P. Lindstrom and V. Pascucci and C.T. Silva", title = "Streaming Simplification of Tetrahedral Meshes", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "1", pages = "145--155", year = "2007", month = "Jan/Feb", keywords = "meshing,", url = "https://publications.utah.edu/publications/vo07/tetstream_tvcg.pdf", } @InProceedings{SCI:Vo2007b, author = "H.T. Vo and S.P. Callahan and N. Smith and C.T. Silva and W. Martin and D. Owen and D.M. Weinstein", title = "iRun: Interactive Rendering of Large Unstructured Grids", booktitle = "Proceedings of the 7th Eurographics Symposium on Parallel Graphics and Visualization (EGPGV 2007)", pages = "93--100", year = "2007", keywords = "irun", url = "https://publications.utah.edu/publications/vo07/egpgv07.pdf", } @Article{SCI:Wal2007a, author = "I. Wald and S. Boulos and P. Shirley", title = "Ray Tracing Deformable Scenes using Dynamic Bounding Volume Hierarchies", journal = "ACM Transactions on Graphics", volume = "26", number = "1", year = "2007", keywords = "rtcenter", url = "https://publications.utah.edu/publications/wald07/togbvh.pdf", } @TechReport{SCI:Wal2007b, author = "I. Wald and H. Friedrich and C.D. Hansen", title = "Interactive Isosurface Ray Tracing of Time-Varying Tetrahedral Volumes", number = "UUSCI-2007-003", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "vacet, scalar field methods, interactive rt distributed interactive ray tracing dirt, rtcenter, isosurfaces", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-003.pdf", } @Article{SCI:Wal2007c, author = "I. Wald and H. Friedrich and A. Knoll and C.D. Hansen", title = "Interactive Isosurface Ray Tracing of Time-Varying Tetrahedral Volumes", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "13", number = "6", pages = "1727--1734", year = "2007", keywords = "rtrt real-time ray tracing, vacet", url = "https://publications.utah.edu/publications/wald07/Wald-Vis07.pdf", } @TechReport{SCI:Wal2007d, author = "I. Wald and C. Gribble and S. Boulos and A. Kensler", title = "SIMD Ray Stream Tracing - SIMD Ray Traversal with Generalized Ray Packets and On-the-fly Re-Ordering -", number = "UUSCI-2007-012", year = "2007", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "interactive ray tracing, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2007-012.pdf", } @Article{SCI:Wal2007e, author = "I. Wald and W.R. Mark and J. G{\"u}nther and S. Boulos and T. Ize and W. Hunt and S.G. Parker and P. Shirley", title = "State of the Art in Ray Tracing Animated Scenes", journal = "Proceedings of Eurographics 2007", pages = "(accepted)", year = "2007", series = "State of the Art Reports", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/wald07/star07rt.pdf", } @InProceedings{SCI:Wal2007f, author = "I. Wald", title = "On fast Construction of {SAH} based Bounding Volume Hierarchies", booktitle = "Proceedings of the 2007 Eurographics/{IEEE} Symposium on Interactive Ray Tracing", pages = "33--40", year = "2007", keywords = "volume rendering, rtcenter", url = "https://publications.utah.edu/publications/wald07/fastbuild.pdf", } @Article{SCI:Web2007a, author = "G.H. Weber and P.-T. Bremer and V. Pascucci", title = "Topological Landscapes: A Terrain Metaphor for Scientific Data", journal = "IEEE Transactions on Visualization and Computer Graphics", year = "2007", note = "(presented at IEEE VIS 2007)", } @Article{SCI:Web2007b, author = "G.H. Weber and S.E. Dillard and H. Carr and V. Pascucci and B. Hamann", title = "Topology-controlled volume rendering", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "13", number = "2", pages = "330--341", year = "2007", month = "January", } @InProceedings{SCI:Wie2007a, author = "A. Wiebel and X. Tricoche and D. Schneider and Heike J{\"a}nicke and Gerik Scheuermann", title = "Generalized Streak Lines: Analysis and Visualization of Boundary Induced Vortices", booktitle = "Proceeding of {IEEE} Visualization 2007", pages = "1735--1742", year = "2007", keywords = "fluid structure problems, vacet", url = "https://publications.utah.edu/publications/wiebel07/wiebel-vis07.pdf", } @Article{SCI:Wol2007b, author = "C.H. Wolters and H. K{\"o}stler and C. M{\"o}ller and J. H{\"a}rtlein and L. Grasedyck and W. Hackbusch", title = "Numerical Mathematics of the Subtraction Method for the Modeling of a Current Dipole in EEG Source Reconstruction Using Finite Element Head Models", journal = "SIAM J. on Scientific Computing", volume = "30", number = "1", pages = "24--45", year = "2007", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, finite elements, ncrr", url = "https://publications.utah.edu/publications/wolters07/WoltersEtAl_SIAM-SISC_Subtraction.pdf", } @InProceedings{SCI:Wol2007c, author = "C.H. Wolters and H. K{\"o}stler and C. M{\"o}ller and J. H{\"a}rdtlein and A. Anwander", title = "Numerical Approaches for Dipole Modeling in Finite Element Method Based Source Analysis", booktitle = "New Frontiers in Biomagnetism. Proceedings of the 15th International Conference on Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006.", volume = "1300", pages = "189--192", year = "2007", series = "International Congress Series", month = "June", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, ncrr, source localization", url = "https://publications.utah.edu/publications/wolters07/Wolters_ICB2006.pdf", } @Article{SCI:Xiu2007a, author = "D. Xiu and J. Shen", title = "An Efficient Spectral Method for Acoustic Scattering from Rough Surfaces", journal = "Communications in Computational Physics", volume = "2", number = "1", pages = "54--72", year = "2007", keywords = "Acoustic scattering, spectral methods, stochastic inputs, differential equations, uncertainty quantification", url = "https://publications.utah.edu/publications/xiu07/Xiu_CiCP2007b.pdf", } @Article{SCI:Xiu2007b, author = "D. Xiu", title = "Efficient Collocational Approach for Parametric Uncertainty Analysis", journal = "Communications in Computational Physics", volume = "2", number = "2", pages = "293--309", year = "2007", keywords = "Collocation methods, pseudo-spectral methods, stochastic inputs, random differential equations, uncertainty quantification", url = "https://publications.utah.edu/publications/xiu07/Xiu_CiCP2007.pdf", } @Article{SCI:Xiu2007c, author = "D. Xiu and S.J. Sherwin", title = "Parametric Uncertainty Analysis of Pulse Wave Propagation in a Model of a Human Arterial Networks", journal = "Journal of Computational Physics", volume = "226", number = "2", pages = "1385--1407", year = "2007", keywords = "Mathematical biology, Hemodynamics, Arterial network, Stochastic modelling, Uncertainty analysis, High-order methods", url = "https://publications.utah.edu/publications/xiu07/Xiu_JCP2007.pdf", } @InProceedings{SCI:Yan2007a, author = "Y. Yang and X. Chen and G. Gopalakrishnan and R.M. Kirby", title = "Distributed Dynamic Partial Order Reduction Based Verification of Threaded Software", booktitle = "Proceedings of Model Checking Software: 14th International SPIN Workshop", volume = "4595/2007", pages = "58--75", year = "2007", month = "July", location = "Berlin, Germany", } @Article{SCI:Yih2007a, author = "B. Yihnaz and R.S. MacLeod and B.B. Punske and B. Taccardi and and D.H. Brooks", title = "Generalized training subset selection for statistical estimation of epicardial activation maps from intravenous catheter measurements", booktitle = "Compo in BioI. and Med.", journal = "Compo in BioI. and Med.", volume = "37", number = "3", pages = "328--336", year = "2007", } @Article{SCI:Yil2007a, author = "B. Yilmaz and R.S. MacLeod", title = "Generalized Training Subset Selection for Statistical Estimation of Epicardial Activation Maps from Intravenous Catheter Measurements", journal = "Computers in Biology and Medicine", volume = "37", number = "9", pages = "328--336", year = "2007", month = "March", } @InProceedings{SCI:Zha2007a, author = "F. Zhang and C. Goodlett and E. Hancock and G. Gerig", title = "Probabilistic White Matter Fiber Tracking using Particle Filtering", booktitle = "Proceedings of The 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007)", volume = "4791", pages = "144--151", year = "2007", series = "Lecture Notes in Computer Science", month = "November", keywords = "diffusion tensor imaging, neuro brain", } @InProceedings{SCI:Adl2006a, author = "G. Adluru and E.V.R. DiBella and R.T. Whitaker", title = "Automatic Segmentation of Cardiac Short Axis Slices in Perfusion {MRI}", booktitle = c-ISBI2006, pages = "133--136", year = "2006", keywords = "ip image processing signal processing, segmentation, cardiac heart, ncrr, ip gp image processing goemetry processing", url = "https://publications.utah.edu/publications/adluru06/Adluru_ISBI_06.pdf", } @InProceedings{SCI:Adl2006b, author = "G. Adluru and E.V.R. DiBella", title = "Segmentation Based Registration of Myocardium in Cardiac Perfusion Images", booktitle = c-ISMRM2006, volume = "14", pages = "1223", year = "2006", keywords = "ip image processing signal processing, segmentation, cardiac heart, ncrr, ip gp image processing goemetry processing", url = "https://publications.utah.edu/publications/adluru06/Adluru_ISMRM_06.pdf", } @Article{SCI:Adl2006d, author = "G. Adluru and E.V.R. DiBella and M.C. Schabel", title = "Model-Based Registration for Dynamic Cardiac Perfusion {MRI}", journal = "Journal of Magnetic Resonance Imaging", volume = "24", number = "5", pages = "1062--1070", year = "2006", publisher = "Wiley Subscription Services, Inc., A Wiley Company", url = "https://publications.utah.edu/publications/Adl2006d/Adluru_JMRI_06.pdf", } @Article{SCI:Alt2006a, author = "I. Altintas and O. Barney and Z. Cheng and T. Critchlow and B. Ludaescher and S.G. Parker and A. Shoshani and M. Vouk", title = "Accelerating the Scientific Exploration Process with Scientific Workflows", journal = "J. Phys. : Conf. Ser.", volume = "46", pages = "468--478", year = "2006", keywords = "SciDAC Scientific Data Management (SDM) Center, , scidac scientific data management (sdm) center", url = "https://publications.utah.edu/publications/altintas06/jpconf6_46_065.pdf", } @Article{SCI:Alt2006b, author = "O. Alter", title = "Discovery of Principles of Nature from Mathematical Modeling of DNA Microarray Data", journal = "Proceedings of the National Academy of Sciences", volume = "103", number = "44", pages = "16063--16064", year = "2006", publisher = "Proceedings of the National Academy of Sciences", month = "October", url = "https://publications.utah.edu/publications/Alt2006b/PNAS-2006-Alter-16063-4.pdf", } @Article{SCI:Alt2006c, author = "O. Alter and G. H. Golub", title = "Singular Value Decomposition of Genome-Scale mRNA Lengths Distribution Reveals Asymmetry in RNA Gel Electrophoresis Band Broadening", title_url = "http://www.alterlab.org/harmonic_oscillator/", journal = "Proceedings of the National Academy of Sciences", volume = "103", number = "32", pages = "11828--11833", year = "2006", publisher = "Proceedings of the National Academy of Sciences", month = "July", url = "https://publications.utah.edu/publications/Alt2006c/Alter_PNAS2006.pdf", } @TechReport{SCI:And2006a, author = "E.W. Anderson and S.P. Callahan and G.T.Y. Chen and J. Freire and E. Santos and C.E. Scheidegger and C.T. Silva and H.T. Vo", title = "Visualization in Radiation Oncology: Towards Replacing the Laboratory Notebook", number = "UUSCI-2006-017", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scalar field methods", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-017.pdf", } @Article{SCI:And2006b, author = "A.E. Anderson and B.J. Ellis and J.A. Weiss", title = "Verification, Validation and Sensitivity Studies in Computational Biomechanics", journal = "Computer Methods in Biomechanics and Biomedical Engineering", pages = "(in press)", year = "2006", keywords = "mrl, computational mechanics, computational biomechanics", url = "https://publications.utah.edu/publications/anderson06/anderson_cmbbe_2007.pdf", } @Article{SCI:Arm2006a, author = "R. Armstrong and G. Kumfert and L.C. McInnes and S.G. Parker and B. Allan and M. Sottile and T. Epperly and T. Dahlgren", title = "The {CCA} Component Model for High-Performance Scientific Computing", journal = "Concurrency and Computation: Practice & Experience", volume = "18", number = "2", pages = "215--229", year = "2006", publisher = "John Wiley and Sons Ltd.", address = "Chichester, UK", issn = "1532-0626", keywords = "ncrr, Common Component Architecture, CCA", } @Article{SCI:Ate2006a, author = "G.A. Ateshian and B.J. Ellis and J.A. Weiss", title = "Equivalence Between Instantaneous Biphasic and Incompressible Elastic Material Response", journal = "Journal of Biomechanical Engineering", pages = "(in press)", year = "2006", month = "November", keywords = "mrl, computational biomechanics", url = "https://publications.utah.edu/publications/ateshian06/ateshian_jbme_2007.pdf", } @Article{SCI:Att2006a, author = "L. Atty and N. Holzschuch and M. Lapierre and J.-M. Hasenfratz and C.D. Hansen and F.X. Sillion", title = "Soft Shadow Maps: Efficient Sampling of Light Source Visibility", journal = "Computer Graphics Forum", volume = "25", number = "4", pages = "725--741", year = "2006", url = "https://publications.utah.edu/publications/atty06/Soft_Shadow_Maps.pdf", } @TechReport{SCI:Awa2006a, author = "S.P. Awate and T. Tasdizen and N. Foster and R.T. Whitaker", title = "Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification", number = "UUSCI-2006-008", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-008.pdf", } @InProceedings{SCI:Awa2006b, author = "S.P. Awate and T. Tasdizen and R.T. Whitaker", title = "Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics", booktitle = "Proceedings of The European Conference on Computer Vision (ECCV) 2006 Springer, Lecture Notes in Computer Science", pages = "494--507", year = "2006", keywords = "segmentation, ip image processing signal processing, crcns", url = "https://publications.utah.edu/publications/awate06/Awate_ECCV_SegmentTextures.pdf", } @TechReport{SCI:Awa2006c, author = "S.P. Awate and T. Tasdizen and R.T. Whitaker", title = "Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics", number = "UUSCI-2006-011", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-011.pdf", } @Article{SCI:Awa2006d, author = "S.P. Awate and R.T. Whitaker", title = "Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration", journal = j-PAMI, volume = "28", number = "3", pages = "364--376", year = "2006", month = "March", keywords = "ip image processing signal processing, ncrr", url = "https://publications.utah.edu/publications/suyash06/Awate_UINTA_PAMI.pdf", } @TechReport{SCI:Awa2006e, author = "S.P. Awate and R.T. Whitaker", title = "Adaptive Markov Models for Information-Theoretic Empirical-Bayesian MRI Denoising", number = "UUSCI-2006-030", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-030.pdf", } @PhdThesis{SCI:Awa2006f, author = "S.P. Awate", title = "Adaptive, Nonparametric Markov Models and Information-Theoretic Methods for Image Restoration and Segmentation", year = "2006", school = "School of Computing, University of Utah", month = "December", note = "PhD Thesis", keywords = "ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/suyash06/Awate_Dissertation.pdf", } @InProceedings{SCI:Awa2006g, author = "S.P. Awate and E.V.R. DiBella and T. Tasdizen and R.T. Whitaker", title = "Model-Based Image Reconstruction for Dynamic Cardiac Perfusion MRI from Sparse Data", booktitle = "Proceedings of the 2006 {IEEE} Int. Conf. Engineering and Biology Society ({EMBC})", pages = "936--941", year = "2006", url = "https://publications.utah.edu/publications/suyash06/Awate_ModelBasedCardiacPerfusionReconstruct.pdf", } @Article{SCI:Awa2006h, author = "S.P. Awate and T. Tasdizen and N.L. Foster and R.T. Whitaker", title = "Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification", journal = "Medical Image Analysis (MEDIA)", volume = "10", number = "5", pages = "726--739", year = "2006", url = "https://publications.utah.edu/publications/suyash06/Awate_MRI_Segmentation.pdf", } @InProceedings{SCI:Bar2006a, author = "L. Barbosa and J. Freire", title = "Automatically Constructing Collections of Online Databases", booktitle = "Proceedings of the 15th ACM International Conference on Information and Knowledge Management (CIKM)", pages = "796--797", year = "2006", location = "Arlington", url = "https://publications.utah.edu/publications/barbosa06/Barbosa_CIKM2006a.pdf", } @InProceedings{SCI:Bas2006a, author = "S. Basu and P.T. Fletcher and R.T. Whitaker", title = "Rician Noise Removal in Diffusion Tensor MRI", booktitle = "Medical Image Computing and Computer Assisted Intervention (MICCAI)", volume = "LNCS 4190", pages = "117--125", year = "2006", month = "October", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/basu06/BasuDTIFilteringMICCAI2006.pdf", } @TechReport{SCI:Bav2006a, author = "L. Bavoil and S.P. Callahan and C.T. Silva", title = "Robust Soft Shadow Mapping with Depth Peeling", number = "UUSCI-2006-028", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "volume rendering", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-028.pdf", } @TechReport{SCI:Bav2006b, author = "L. Bavoil and S.P. Callahan and A. Lefohn and J.L.D. Comba and C.T. Silva", title = "Multi-Fragment Effects on the GPU using the k-Buffer", number = "UUSCI-2006-032", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-032.pdf", } @Proceedings{SCI:Beb2006a, title = "Advances in Visual Computing, Second International Symposium, {ISVC} 2006, Lake Tahoe, {NV}, {USA}, November 6-8, 2006 Proceedings, Part {I}", booktitle = "ISVC (1)", volume = "4291", year = "2006", editor = "George Bebis and Richard Boyle and Bahram Parvin and Darko Koracin and Paolo Remagnino and Ara V. Nefian and Meenakshisundaram Gopi and Valerio Pascucci and Jiri Zara and Jose Molineros and Holger Theisel and Thomas Malzbender", series = "Lecture Notes in Computer Science", publisher = "Springer", isbn = "3-540-48628-3", } @Article{SCI:Ben2006a, author = "C. Benthin and I. Wald and P. Slusallek", title = "Techniques for Interactive Ray Tracing of Bezier Surfaces", journal = "Journal of Graphics Tools", volume = "11", number = "2", pages = "1--16", year = "2006", keywords = "rtcenter", } @InProceedings{SCI:Ben2006b, author = "C. Benthin and I. Wald and M. Scherbaum and H. Friedrich", title = "Ray Tracing on the {CELL} Processor", booktitle = "Proceedings of the 2006 {IEEE} Symposium on Interactive Ray Tracing", pages = "25--32", year = "2006", keywords = "rtcenter", url = "https://publications.utah.edu/publications/benthin06/cell.pdf", } @InProceedings{SCI:Ber2006a, author = "F.F. Bernardon and S.P. Callahan and J.L.D. Comba and C.T. Silva", title = "Interactive Volume Rendering of Unstructured Grids with Time-Varying Scalar Fields", booktitle = "Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization", pages = "51--58", year = "2006", keywords = "scalar field methods, volume rendering", url = "https://publications.utah.edu/publications/bernardon06/egpgv2006.pdf", } @TechReport{SCI:Ber2006b, author = "M. Berzins", title = "Is there Still More to Science than Simulation?", number = "UUSCI-2006-031", year = "2006", institution = "SCI Institute, University of Utah", month = "November", url = "https://publications.utah.edu/publications/Ber2006b/UUSCI-2006-031.pdf", } @TechReport{SCI:Ber2006c, author = "M. Berzins", title = "Adaptive Polynomial Interpolation on Evenly Spaced Meshes", number = "UUSCI-2006-033", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-033.pdf", } @Article{SCI:Bet2006a, author = "W. Bethel and C.R. Johnson and C.D. Hansen and S.G. Parker and A.R. Sanderson and C.T. Silva and X. Tricoche and V. Pascucci and H. Childs and J. Cohen and M. Duchaineau and D. Laney and P. Lindstrom and S. Ahern and J. Meredith and G. Ostrouchov and K. Joy and B. Hamann", title = "VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies", journal = "J. Phys.: Conf. Ser.", volume = "46", pages = "561--569", year = "2006", keywords = "VACET, SciDAC", url = "https://publications.utah.edu/publications/bethel06/jpconf6_46_078.pdf", } @TechReport{SCI:Big2006a, author = "J. Bigler and A.J. Stephens and S.G. Parker", title = "Design for Parallel Interactive Ray Tracing Systems", number = "UUSCI-2006-027", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-027.pdf", } @InProceedings{SCI:Big2006b, author = "J. Bigler and J. Guilkey and C. Gribble and C.D. Hansen and S.G. Parker", title = "A Case Study: Visualizing Material Point Method Data", booktitle = "Proceedings of Euro Vis 2006", pages = "299--306, 377", year = "2006", month = "May", keywords = "mpm material point method, csafe c-safe", url = "https://publications.utah.edu/publications/bigler06/mpmvis-electronic.pdf", } @InProceedings{SCI:Big2006c, author = "J. Bigler and A.J. Stephens and S.G. Parker", title = "Design for Parallel Interactive Ray Tracing Systems", booktitle = "Proceedings of The {IEEE} {S}ymposium on {I}nteractive {R}ay {T}racing", pages = "187--196", year = "2006", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/bigler06/manta-rt06.pdf", } @TechReport{SCI:Bou2006a, author = "S. Boulos and D. Edwards and J.D. Lacewell and J.M. Kniss and J. Kautz and P. Shirley and I. Wald", title = "Interactive Distribution Ray Tracing", number = "UUSCI-2006-022", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-022.pdf", } @TechReport{SCI:Bou2006b, author = "S. Boulos and I. Wald and P. Shirley", title = "Geometric and Arithmetic Culling Methods for Entire Ray Packets", number = "UUCS-06-010", year = "2006", institution = "School of Computing, University of Utah", type = "School of Computing Technical Report", keywords = "rtcenter", url = "https://publications.utah.edu/publications/boulos06/UUCS-06-10.pdf", } @InProceedings{SCI:Bre2006b, author = "P.-T. Bremer and W. Cabot and A. Cook and D. Laney and A. Mascarenhas and P. Miller and V. Pascucci", title = "Understanding the Structure of the Turbulent Mixing Layer in Hydrodynamic Instabilities", booktitle = "Proceedings of SciDAC 2006 -- Scientific Discovery Through Advanced Computing", volume = "46", pages = "556--560", year = "2006", publisher = "Journal of Physics Conference Series", month = "June", location = "Denver, CO, USA", } @Article{SCI:Bro2006a, author = "S. Browd and L.J. Healy and G. Dobie and J.T. Johnson III and G.M. Jones and L.F. Rodriguez and D.L. Brockmeyer", title = "Morphometric and Qualitative Analysis of Congenital Occipitocervical Instability in Children: Implications for Down Syndrome Patients", journal = "Journal of Neurosurgery: Pediatrics", volume = "105", number = "1 ", pages = "50--54", year = "2006", publisher = "Journal of Neurosurgery Publishing Group", month = "July", } @Article{SCI:But2006a, author = "C.R. Butson and C.B. Maks and C.C. McIntyre", title = "Sources and effects of electrode impedance during deep brain stimulation", journal = "Clinical Neurophysiology", volume = "117", number = "2", pages = "447--454", year = "2006", keywords = "Brain, Brain: physiology, Computer Simulation, Deep Brain Stimulation, Electric Conductivity, Electric Impedance, Electrodes, Humans, Imaging, Models, Neurological, Three-Dimensional", url = "https://publications.utah.edu/publications/But2006a/Butson_ClinNeurophys2006.pdf", } @Article{SCI:But2006b, author = "C.R. Butson and C.C. McIntyre", title = "Role of electrode design on the volume of tissue activated during deep brain stimulation", journal = "Journal of Neural Engineering", volume = "3", number = "1", pages = "1--8", year = "2006", month = "March", issn = "1741-2560", keywords = "Animals, Brain, Brain: physiology, Computer Simulation, Computer-Aided Design, Deep Brain Stimulation, Deep Brain Stimulation: instrumentation, Deep Brain Stimulation: methods, Electrodes, Equipment Design, Equipment Design: methods, Equipment Failure Analysis, Equipment Failure Analysis: methods, Humans, Implanted, Microelectrodes, Models, Neurological, Neurons, Neurons: physiology, Organ Size, Organ Size: physiology", url = "https://publications.utah.edu/publications/But2006b/Butson_JNeuralEng2006.pdf", } @InProceedings{SCI:Cal2006a, author = "S.P. Callahan and J. Freire and E. Santos and C.E. Scheidegger and C.T. Silva and H.T. Vo", title = "Managing the Evolution of Dataflows with VisTrails", booktitle = "Proceedings of The 2006 {IEEE} Workshop on Workflow and Data Flow for Scientific Applications (SciFlow 2006)", year = "2006", keywords = "vistrails,", url = "https://publications.utah.edu/publications/stevec06/sciflow2006.pdf", } @InProceedings{SCI:Cal2006b, author = "S.P. Callahan and J. Freire and E. Santos and C. Scheidegger and C.T. Silva and H.T. Vo", title = "VisTrails: Visualization Meets Data Management", booktitle = "Proceedings of the 2006 ACM SIGMOD/PODS Conference", pages = "745--747", year = "2006", keywords = "vistrails, provenance, workflow management", url = "https://publications.utah.edu/publications/stevec06/vt-sigmod.pdf", } @TechReport{SCI:Cal2006c, author = "S.P. Callahan and J. Freire and E. Santos and C.E. Scheidegger and C.T. Silva and H.T. Vo", title = "Using Provenance to Streamline Data Exploration through Visualization", number = "UUSCI-2006-016", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "VisTrails", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-016.pdf", } @TechReport{SCI:Cal2006d, author = "S.P. Callahan and L. Bavoil and V. Pascucci and C.T. Silva", title = "Progressive Volume Rendering of Large Unstructured Grids", number = "UUSCI-2006-019", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "volume rendering, rtrt real-time ray tracing, scientific visualization", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-019.pdf", } @Article{SCI:Cal2006e, author = "S.P. Callahan and L. Bavoil and V. Pascucci and C.T. Silva", title = "Progressive Volume Rendering of Large Unstructured Grids", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "12", number = "5", pages = "1307--1314", year = "2006", note = "Updated version of UUSCI-2006-019.", keywords = "volume rendering", url = "https://publications.utah.edu/publications/stevec06/pro-havs.pdf", } @TechReport{SCI:Car2006a, author = "C.D. Carbonera and J.F. Shepherd", title = "On the Existence of a Perfect Matching for 4-regular Graphs derived from Quadrilateral Meshes", number = "UUSCI-2006-021", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-021.pdf", } @InProceedings{SCI:Car2006b, author = "C.D. Carbonera and J.F. Shepherd", title = "A Constructive Approach to Constrained Hexahedral Mesh Generation", booktitle = "Proceedings of the 15th International Meshing Roundtable", year = "2006", month = "September", location = "Birmingham, AL", keywords = ", meshing, open problem 27", url = "https://publications.utah.edu/publications/carbonera06/carbonera.pdf", } @Article{SCI:Cas2006a, author = "C.J. Cascio and M. Styner and R.G. Smith and M.D. Poe and G. Gerig and H.C. Hazlett and M. Jomier and R. Bammer and J. Piven", title = "Tractography-Based Segmentation of the Corpus Callosum Reveals a Reduced Relationship to Cortical White Matter Volume in Young Children with Developmental Delay", journal = "Am J Psychiatry", volume = "163", pages = "2157--2163", year = "2006", month = "December", } @Article{SCI:Cas2007a, author = "C.J. Cascio and G. Gerig and J. Piven", title = "Diffusion Tensor Imaging: Application to the Study of the Developing Brain", journal = "Journal of the American Academy of Child and Adolescent Psychiatry JAACAP", year = "2006", month = "August", } @InProceedings{SCI:Cat2006a, author = "J. Cates and M.D. Meyer and P.T. Fletcher and R.T. Witaker", title = "Entropy-Based Particle Systems for Shape Correspondence", booktitle = "Workshop on Mathematical Foundations of Computational Anatomy, MICCAI 2006", pages = "90--99", year = "2006", month = "October", keywords = "particle systems, , particle systems", url = "https://publications.utah.edu/publications/cates06/Cates-miccai2006.pdf", } @InProceedings{SCI:Cat2006b, author = "J. Cates and D. Weinsten and M. Davis", title = "The Center for Integrative Biomedical Computing: Advancing Biomedical Science with Open Source", booktitle = "Proceedings of the {IEEE} International Symposium on Biomedical Imaging ({ISBI}) 2006", year = "2006", keywords = "ncrr, open source software, biomedical", url = "https://publications.utah.edu/publications/cates06/Cates-isbi2006.pdf", } @Article{SCI:Cor2006a, author = "I. Corouge and P.T. Fletcher and S. Joshi and S. Gouttard and G. Gerig", title = "Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor {MRI} Analysis", journal = "Medical Image Analysis", volume = "10", number = "5", pages = "786--798", year = "2006", url = "https://publications.utah.edu/publications/corouge06/Corouge_MedIA2006a.pdf", } @InProceedings{SCI:Die2006a, author = "A. Dietrich and I. Wald and H. Schmidt and K. Sons and P. Slusallek", title = "Realtime Ray Tracing for Advanced Visualization in the Aerospace Industry", booktitle = "Proceedings of the 5th Paderborner Workshop Augmented and Virtual Reality in der Produktentstehung", year = "2006", keywords = "rtcenter", url = "https://publications.utah.edu/publications/dietrich06/aerospace.pdf", } @InProceedings{SCI:Dil2006a, author = "S.E. Dillard and V. Natarajan and G.H. Weber and V. Pascucci and B. Hamann", title = "Tessellation of Quadratic Elements", booktitle = "ISAAC", pages = "722--731", year = "2006", } @Article{SCI:Don2006a, author = "S. Dong and P.-T. Bremer and M. Garland and V. Pascucci and J.C. Hart", title = "Spectral Surface Quadrangulation", journal = "{ACM} Transactions on graphics: {ACM} {SIGGRAPH} 2006 Papers", pages = "1057--1066", year = "2006", publisher = "ACM Press", address = "New York, NY, USA", location = "Boston, Massachusetts", isbn = "1-59593-364-6", url = "https://publications.utah.edu/publications/dong06/Dong_Spec_Surf_Quad.pdf", } @InProceedings{SCI:Dou2006a, author = "C.C. Douglas and J.C. Harris and M. Iskandarani and C.R. Johnson and R.J. Lodder and S.G. Parker and M.J. Cole and R. Ewing and Y. Efendiev and R. Lazarov and G. Qin", title = "Dynamic Contaminant Identification in Water", booktitle = "Proceedings of Computational Science - {ICCS} 2006: 6th International Conference, Part {III}", volume = "3993", pages = "393--400", year = "2006", editor = "Vassil N. Alexandrov and Geert Dick van Albada and Peter M.A. Sloot and Jack J. Dongarra", series = "Lecture Notes in Computer Science series", publisher = "Springer-Verlag Heidelberg", location = "Reading, UK, May 28-31, 2006", url = "https://publications.utah.edu/publications/douglas06/sssi-cid.pdf", } @InProceedings{SCI:Ede2006a, author = "H. Edelsbrunner and D. Morozov and V. Pascucci", title = "Persistence-based Simplification of Real-Valued Functions on 2-Manifolds", booktitle = "Proceedings of the 22nd International Annual Symposium on Computational Geometry", pages = "212--220", year = "2006", note = "To appear", } @InProceedings{SCI:Eid2006a, author = "E. Eide and L. Stoller and T. Stack and J. Freire and J. Lepreau", title = "Integrated Scientific Workflow Management for the Emulab Network Testbed", booktitle = "Proceedings of the 2006 USENIX Annual Technical Conference", pages = "33", year = "2006", keywords = "provenance, workflows, workflow management, vistrails", } @Article{SCI:Ell2006a, author = "B.J. Ellis and R.E. Debski and S.M. Moore and P.J. McMahon and J.A. Weiss", title = "Methodology and Sensitivity Studies for Finite Element Modeling of the Inferior Glenohumeral Ligament Complex", journal = j-BM, volume = "40", number = "3", pages = "603--612", year = "2006", month = "January", keywords = "finite elements, computational mechanics, computational biomechanics, multiscale tissue modeling multiscale tissue simulation, mrl", url = "https://publications.utah.edu/publications/ellis06/ellis_jbiomech_2006.pdf", } @Article{SCI:Ell2006b, author = "B.J. Ellis and T.J. Lujan and M.S. Dalton and J.A. Weiss", title = "MCL Insertion Site and Contact Forces in the ACL-Deficient Knee", journal = "Journal of Orthopaedic Research", volume = "24", number = "4", pages = "800--810", year = "2006", publisher = "Elsevier", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/ellis06/ellis_jor_2006.pdf", } @InCollection{SCI:Fle2006a, author = "P.T. Fletcher and S.M. Pizer and S. Joshi", title = "Shape Variation of Medial Axis Representations via Principal Geodesic Analysis on Symmetric Spaces", booktitle = "Statistics and Analysis of Shapes", pages = "29--59", year = "2006", publisher = "Springer", } @InProceedings{SCI:Fle2006b, author = "P.T. Fletcher and R.T. Whitaker", title = "Riemannian Metrics on the Space of Solid Shapes", booktitle = "MICCAI Workshop on Mathematical Foundations of Computational Anatomy", year = "2006", month = "October", url = "https://publications.utah.edu/publications/fletcher06/FletcherMFCA2006.pdf", } @Article{SCI:Fre2006a, author = "J. Freire and C.T. Silva and S.P. Callahan and E. Santos and C.E. Scheidegger and H.T. Vo", title = "Managing Rapidly-Evolving Scientific Workflows", booktitle = "Proceedings of The 2006 International Provenance and Annotation Workshop", journal = "Provenance and Annotation of Data", pages = "10--18", year = "2006", series = "Lecture Notes in Computer Science (LNCS)", keywords = "scirun, pse pses problem solving envoronment, vistrails, provenance", url = "https://publications.utah.edu/publications/freire06/ipaw2006.pdf", } @InProceedings{SCI:Ger2006a, author = "G. Gerig and B. Davis and P. Lorenzen and S. Xu and M. Jomier and J. Piven and S. Joshi", title = "Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth", booktitle = "Proceedings of The Third International Symposium on 3D Data Processing, Visualization, and Transmission", pages = "1041--1047", year = "2006", month = "June", url = "https://publications.utah.edu/publications/gerig06/CompAnat-3dpvt-Gerig-final.pdf", } @InProceedings{SCI:Ger2006b, author = "G. Gerig and S. Joshi and P.T. Fletcher and K. Gorczowski and S. Xu and S.M. Pizer and M. Styner", title = "Statistics of Populations of Images and its Embedded Objects: Driving Applications in Neuroimaging", booktitle = "Proceedings of {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "1120--1123", year = "2006", month = "April", url = "https://publications.utah.edu/publications/gerig06/ISBI06_Gerig.pdf", } @Article{SCI:Gho2006a, author = "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S. MacLeod", title = "Wavefront-based Models for Inverse Electrocardiography", journal = j-BME, volume = "53", number = "9", pages = "1821--1831", year = "2006", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr, cibc simulation math modeling", url = "https://publications.utah.edu/publications/ghodrati06/Ghodrati_TBE2006.pdf", } @Article{SCI:Gho2006b, author = "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S. MacLeod", title = "Lead Selection for Inverse Electrocardiography", journal = j-BME, pages = "in press", year = "2006", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr", } @InProceedings{SCI:Gho2006c, author = "A. Ghodrati and A. Keely and G. Tadmor and R.S. MacLeod and D.H. Brooks", title = "A Wavefront-Based Constraint for Potential Surface Solutions in Inverse Electrocardiography", booktitle = "2006 International Conference of the {IEEE} Engineering in Medicine and Biology Society", year = "2006", publisher = "IEEE", address = "New York, NY, USA", month = "August", keywords = "forward problems inverse problems forward simulation inverse solutions, simulation math modeling, bioelectric fields, ncrr, cibc", url = "https://publications.utah.edu/publications/Gho2006c/Ghodrati_EMBS2006.pdf", } @Conference{SCI:Gho2006d, author = "A. Ghodrati and D.H Brooks and G. Tadmor and R.S. MacLeod", title = "A Threshold-Based Method for Inverse Solutions to Reconstruct Complex Obstacles, with Application to the Inverse Problem of Electrocardiography", booktitle = "SIAM Conference on Imaging Science", year = "2006", address = "Minneapolis, MN, USA", month = "May", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr, simulation math modeling, bioelectric fields", } @Article{SCI:Gil2006a, author = "J.H. Gilmore and W. Lin and G. Gerig", title = "IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain Development", journal = "Am J Psychiatry", volume = "163", pages = "2046", year = "2006", month = "December", } @Article{SCI:Goo2006b, author = "C.E. Goodyer and M. Berzins and P.K. Jimack and L.E. Scales", title = "A {G}rid-enabled Problem Solving Environment for Parallel Computational Engineering Design", journal = "Advances in Engineering Software", volume = "37", number = "7", pages = "439--449", year = "2006", url = "https://publications.utah.edu/publications/goodyer06/GBJS05.pdf", } @InCollection{SCI:Goo2006c, author = "C.E. Goodyer and M. Berzins", title = "Solving Computationally Intensive Engineering Problems on the {G}rid using {P}roblem {S}olving {E}nvironments", booktitle = "Grid Computing: Software Environments and Tools", pages = "284--301", year = "2006", editor = "J.C. Cunha and O.F. Rana", publisher = "Springer Verlag", url = "https://publications.utah.edu/publications/goodyer06/CEGMBchapter12.pdf", } @Article{SCI:Goo2006d, author = "C.E. Goodyer and M. Berzins", title = "Adaptive Timestepping for Elastohydrodynamic Lubrication Solvers", journal = "SIAM Journal on Scientific Computing", volume = "28", number = "2", pages = "626-650", year = "2006", publisher = "SIAM", keywords = "EHL, elastohydrodynamic lubrication, method of lines, differential-algebraic equations, variable timestepping, error balancing", url = "https://publications.utah.edu/publications/goodyer06/GoodyerSIAM2006.pdf", } @TechReport{SCI:Gri2006a, author = "C. Gribble and T. Ize and A. Kensler and I. Wald and S.G. Parker", title = "A Coherent Grid Traversal Approach to Visualizing Particle-based Simulation Data", number = "UUSCI-2006-024", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing, interactive rt distributed interactive ray tracing dirt, grid traversal, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-024.pdf", } @InProceedings{SCI:Gri2006b, author = "C.P. Gribble and A.J. Stephens and J.E. Guilkey and S.G. Parker", title = "Visualizing Particle-Based Simulation Datasets on the Desktop", booktitle = "Proceedings of the British HCI 2006 Workshop on Combining Visualization and Interaction to Facilitate Scientific Exploration and Discovery", year = "2006", keywords = "mpm material point method, rtrt real-time ray tracing, csafe c-safe", url = "https://publications.utah.edu/publications/Gri2006b/gpup-hci06.pdf", } @InProceedings{SCI:Gri2006c, author = "C.P. Gribble and S.G. Parker", title = "Enhancing Interactive Particle Visualization with Advanced Shading Models", booktitle = "Proceedings of the {ACM} Siggraph Third Symposium on Applied Perception in Graphics and Visualization", pages = "111--118", year = "2006", keywords = "mpm material point method, rtrt real-time ray tracing, csafe c-safe, rtcenter", url = "https://publications.utah.edu/publications/Gri2006c/plt-apgv06.pdf", } @Article{SCI:Gui2006a, author = "J.E. Guilkey and J.B. Hoying and J.A. Weiss", title = "Computational Modeling of Multicellular Constructs with the Material Point Method", journal = "Journal of Biomechanics", volume = "39", number = "11", pages = "2074--2086", year = "2006", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/guilkey06/guilkey_j_biomech_2006.pdf", } @Article{SCI:Gyu2006a, author = "A. Gyulassy and V. Natarajan and V. Pascucci and P.-T. Bremer and B. Hamann", title = "A Topological Approach to Simplification of Three-Dimensional Scalar Functions", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "12", number = "4", pages = "474--484", year = "2006", month = "August", } @InProceedings{SCI:Ham2006b, author = "C.W. Hamman and R.M. Kirby and J.C. Klewicki", title = "On the Lamb Vector Divergence as a Momentum Field Diagnostic Employed in Turbulent Channel Flow", booktitle = "Proceedings of the 59th Annual Meeting of the American Physical Society, Division of Fluid Dynamics", year = "2006", month = "November", location = "Tampa Bay, Fl", } @InCollection{SCI:Har2006a, author = "D. Hart and C.E. Goodyer and M. Berzins and P.K. Jimack and L. Scales", title = "Adjoint Error Estimation and Spatial Adaptivity for EHL-Like Models", booktitle = "IUTAM Symposium on Elastohydrodynamics and Micro-elastohydrodynamics", pages = "47--58", year = "2006", publisher = "Springer", keywords = "computational mechanics, error estimation, discrete adjoint, EHL, friction calculation, mesh adaptation, ehl", url = "https://publications.utah.edu/publications/Har2006a/HGBJS06.pdf", } @Article{SCI:Haz2006a, author = "H.C. Hazlett and M.D. Poe and G. Gerig and R.G. Smith and J. Piven", title = "Cortical Gray and White Brain Tissue Volume in Adolescents and Adults with Autism", journal = "Biological Psychiatry", volume = "59", number = "1", pages = "1--96", year = "2006", month = "January", } @Article{SCI:Ion2006a, author = "I. Ionescu and J.E. Guilkey and M. Berzins and R.M. Kirby and J.A. Weiss", title = "Simulation of Soft Tissue Failure Using the Material Point Method", journal = "Journal of Biomechanical Engineering", volume = "128", number = "6", pages = "917--924", year = "2006", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/ionescu06/ionescu_jbme_2006.pdf", } @TechReport{SCI:Ize2006a, author = "T. Ize and I. Wald and C. Robertson and S.G. Parker", title = "An Evaluation of Parallel Grid Construction for Ray Tracing Dynamic Scenes", number = "UUSCI-2006-025", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "interactive rt distributed interactive ray tracing dirt, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-025.pdf", } @InProceedings{SCI:Ize2006b, author = "T. Ize and I. Wald and C. Robertson and S.G. Parker", title = "An Evaluation of Parallel Grid Construction for Ray Tracing Dynamic Scenes", booktitle = "Proceedings of the 2006 {IEEE} Symposium on Interactive Ray Tracing", volume = "1", pages = "47--55", year = "2006", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/thiago06/parallelBuild.pdf", } @TechReport{SCI:Ize2006c, author = "T. Ize and I. Wald and S.G. Parker", title = "Asynchronous BVH Construction for Ray Tracing Dynamic Scenes", year = "2006", institution = "SCI Institute", note = "UUSCI-2006-034", keywords = "rtrt real-time ray tracing, rtcenter", url = "https://publications.utah.edu/publications/Ize2006c/UUSCI-2006-034.pdf", } @InProceedings{SCI:Jeo2006a, author = "W-K. Jeong and R.T. Whitaker and M. Dobin", title = "Interactive 3D Seismic Fault Detection on the Graphics Hardware", booktitle = "Proceedings of International Workshop on Volume Graphics", journal = "Proceedings of the 2006 International Workshop on Volume Graphics", pages = "111--118", year = "2006", keywords = "geophysics geology, fault detection, seismology", url = "https://publications.utah.edu/publications/Jeo2006a/vg06-jeong.pdf", } @InProceedings{SCI:Joh2006a, author = "C.R. Johnson and D.M. Weinstein", title = "Biomedical Computing and Visualization", booktitle = "Proceedings of the Twenty-Ninth Australasian Computer Science Conference (ACSC2006): Conferences in Research and Practice in Information Technology (CRPIT)", volume = "48", pages = "3-10", year = "2006", editor = "Vladimir Estivill-Castro and Gill Dobbie", location = "Hobart, Australia", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr, scientific visualization", url = "https://publications.utah.edu/publications/crj06/Chris-Johnson-Keynote-Paper05.pdf", } @Article{SCI:Joh2006c, author = "J.T. Johnson III and M.S. Hansen and I. Wu and L.J. Healy and C.R. Johnson and G.M. Jones and M.R. Capecchi and C. Keller", title = "Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping", journal = "PLoS Genetics", volume = "2", number = "1", pages = "471--477", year = "2006", month = "April", keywords = "genetic mutation, phenotyping, histology", url = "https://publications.utah.edu/publications/johnson06/johnson_PLOSgen2006.pdf", } @InCollection{SCI:Joh2006d, author = "C.R. Johnson", title = "Computational Methods and Software for Bioelectric Field Problems", booktitle = "Biomedical Engineering Handbook, 2nd Edition", volume = "1", pages = "1--23", year = "2006", editor = "J.D. Bronzino", chapter = "23", publisher = "CRC Press, Boca Raton", keywords = "ncrr, pse pses problem solving envoronment, bioelectric fields", } @InProceedings{SCI:Joh2006e, author = "C.R. Johnson and S.G. Parker", title = "Problem Solving Environments for DDDAS", booktitle = "Proceedings of the Ninth Copper Mountain Conference on Iterative Methods", year = "2006", month = "April", location = "Copper Mountain, CO", note = "Minisymposium: Actually Doing Dynamic Data-driven Application Simulations", } @InProceedings{SCI:Joh2006f, author = "J.T. Johnson III and M.S. Hansen and I.Q Wu and L.J. Healy and C.R. Johnson and G.M. Jones and M.R. Capecchi and C.Keller", title = "Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping", booktitle = "Proceedings of the Teratology 46th Annual Meeting", year = "2006", location = "Tucson, AZ", keywords = "genetic mutation, phenotyping, histology", } @Unpublished{SCI:Joh2006g, author = "C.R. Johnson and R. Moorhead and T. Munzner and H. Pfister and P. Rheingans and T.S. Yoo and (Eds.)", title = "NIH/NSF Visualization Research Challenges Report", year = "2006", note = "IEEE Press", isbn = "0-7695-2733-7", url = "https://publications.utah.edu/publications/Joh2006g/NIH-NSF-VRC-Report-Final.pdf", } @Conference{SCI:Jol2006a, author = "M. Jolley and J. Triedman and C.-F. Westin and D.M. Weinstein and R.S. MacLeod and D.H. Brooks", title = "Image Based Modeling of Defibrillation in Children", booktitle = "Proceedings of the 26th Annual International Conference of the {IEEE} {EMBS}", year = "2006", address = "New York, NY, USA", month = "August", keywords = "ncrr", } @InProceedings{SCI:Jur2006a, author = "E. Jurrus and T. Tasdizen and P. Koshevoy and P.T. Fletcher and M. Hardy and C-B. Chien and W. Denk and R.T. Whitaker", title = "Axon Tracking in Serial Block-Face Scanning Electron Microscopy", booktitle = "Workshop on Microscopic Image Analysis with Applications in Biology, MICCAI", year = "2006", month = "October", keywords = "ip gp image processing goemetry processing, crcns", } @InProceedings{SCI:Kin2006a, author = "G. Kindlmann and X. Tricoche and C.-F. Westin", title = "Anisotropy Creases Delineate White Matter Structure in Diffusion Tensor {MRI}", booktitle = "Proceedings of the Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06)", pages = "126--133", year = "2006", series = "Springer Lecture Notes in Computer Science 4190", month = "October", location = "Copenhagen, Denmark", keywords = "diffusion tensor imaging, ncrr", url = "https://publications.utah.edu/publications/gk06/kindlmannMICCAI06.pdf", } @Article{SCI:Kir2006a, author = "N.D. Kirkpatrick and J.B. Hoying and S.K. Botting and J.A. Weiss and U. Utzinger", title = "In Vitro Model for Endogenous Optical Signatures of Collagen", journal = "Journal of Biomedical Optics", volume = "11", number = "5", year = "2006", month = "September/October", keywords = "angiogenesis, computational biomechanics, multiscale tissue modeling multiscale tissue simulation", url = "https://publications.utah.edu/publications/kirkpatrick06/kirkpatrick_j_biomed_optics_2006.pdf", } @InProceedings{SCI:Kir2006b, author = "R.M. Kirby and C.R. Johnson and M. Berzins", title = "Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges", booktitle = "Proceedings of Computational Science - ICCS 2006: 6th International Conference", volume = "3992", year = "2006", series = "Lecture Notes in Computer Science", month = "May 28-31", location = "Reading, UK", url = "https://publications.utah.edu/publications/kirby06/iccs06hpc.pdf", } @Article{SCI:Kir2006c, author = "R.M. Kirby and S.J. Sherwin", title = "Stabilisation of Spectral/hp Element Methods Through Spectral Vanishing Viscosity: Application to Fluid Mechanics Modelling", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "195", pages = "3128--3144", year = "2006", url = "https://publications.utah.edu/publications/kirby06/Kirby-12.pdf", } @Article{SCI:Kir2006d, author = "R.M. Kirby and S.J. Sherwin", title = "Aliasing Errors Due to Quadratic Non-Linearities On Triangular Spectral/hp Element Discretisations", journal = "Journal of Engineering Mathematics", volume = "56", number = "3", pages = "273--288", year = "2006", } @Article{SCI:Kir2006e, author = "R.M. Kirby and Z. Yosibash and G.E. Karniadakis", title = "Towards Stable Coupling Methods for High-Order Discretizations of Fluid-Structure Interaction: Algorithms and Observations", journal = "Journal of Computational Physics", volume = "223", number = "2", pages = "489--518", year = "2006", } @Article{SCI:Kir2006f, author = "R.M. Kirby and S.J. Sherwin", title = "Aliasing Errors Due to Quadratic Non-Linearities On Triangular Spectral/hp Element Discretisations", journal = "Journal of Engineering Mathematics", volume = "56", pages = "273--288", year = "2006", url = "https://publications.utah.edu/publications/kirby06/Kirby-16.pdf", } @TechReport{SCI:Kno2006a, author = "A. Knoll and I. Wald and S.G. Parker and C.D. Hansen", title = "Interactive Isosurface Ray Tracing of Large Octree Volumes", number = "UUSCI-2006-026", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "interactive rt distributed interactive ray tracing, octree, rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-026.pdf", } @TechReport{SCI:Kos2006a, author = "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker", title = "Implementation of an Automatic Slice-to-Slice Registration Tool", number = "UUSCI-2006-018", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, warping, deformable image registration, TEM, SIFT, crcns, tem, sift", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-018.pdf", } @TechReport{SCI:Kos2006b, author = "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker", title = "Implementation of an Automatic Image Registration Tool", number = "UUSCI-2006-020", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, warping, deformable image registration, tem, sift, crcns", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-020.pdf", } @InProceedings{SCI:Kos2006c, author = "P. Koshevoy and T. Tasdizen and R.T. Whitaker and B. Jones and R. Marc", title = "Assembly of Large Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy", booktitle = "Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology", year = "2006", month = "October", keywords = "ip image processing signal processing, warping, deformable image registration, crcns", url = "https://publications.utah.edu/publications/koshevoy06/paper9tasdizen.pdf", } @Article{SCI:Kum2006a, author = "G. Kumfert and D.E. Bernholdt and T.G.W. Epperly and J.A. Kohl and L.C. McInnes and S.G. Parker and J. Ray", title = "How the Common Component Architecture Advances Computational Science", journal = "J. Phys.: Conf. Ser.", volume = "46", pages = "479--493", year = "2006", keywords = "ncrr, Common Component Architecture, CCA", url = "https://publications.utah.edu/publications/kumfert06/jpconf6_46_066.pdf", } @Article{SCI:Lef2006a, author = "A. Lefohn and J.M. Kniss and R. Strzodka and S. Sengupta and J. Owens", title = "Glift: Generic, Efficient Random-Access GPU Data Structures", journal = j-ACM-CG, volume = "25", number = "1", pages = "1--37", year = "2006", month = "January", keywords = ", adaptive shadow maps, data structures, graphics hardware, GPU, GPGPU, multiresolution, octree textures, parallel computation", url = "https://publications.utah.edu/publications/lefohn06/tog-05-0077.pdf", } @InProceedings{SCI:Li2006a, author = "G. Li and X. Tricoche and C.D. Hansen", title = "GPUFLIC: Interactive and Accurate Dense Visualization of Unsteady Flows", booktitle = "Proceedings of Euro Vis 2006", pages = "29--34", year = "2006", url = "https://publications.utah.edu/publications/li06/eurovis06.pdf", } @InProceedings{SCI:Li2006b, author = "G. Li and X. Tricoche and C.D. Hansen", title = "Survey of Texture-based Techniques in Flow Visualization", booktitle = "VIsualization of Large and Unstructured Data Sets - Applications in Geospatial Planning, Modeling, and Engineering", pages = "11--21", year = "2006", series = "Lecture Notes in Informatics - Visualization of Large and Unstructured Data Sets. First workshop of the DFG's International Research Training Group", edition = "GI-Edition", month = "June", location = "Dagstuhl, Germany", } @TechReport{SCI:Liv2006a, author = "O.E. Livne", title = "Clustering on Single Refinement Level: Berger-Rigoustos Algorithm", number = "UUSCI-2006-001", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-001.pdf", } @TechReport{SCI:Liv2006b, author = "O.E. Livne", title = "Minimum and Maximum Patch Size Clustering on a Single Refinement Level", number = "UUSCI-2006-002", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-002.pdf", } @TechReport{SCI:Liv2006c, author = "O.E. Livne", title = "Efficient Update of Persistent Patches in the Berger Rigoutsous Algorithm", number = "UUSCI-2006-003", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-003.pdf", } @TechReport{SCI:Liv2006d, author = "O.E. Livne", title = "Clustering Patches for Multi-Level Refined Grids: a Hierarchical Approach", number = "UUSCI-2006-004", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-004.pdf", } @TechReport{SCI:Liv2006e, author = "O.E. Livne", title = "ShockTube Problem - Status Report 1 Uni-Level Experiments", number = "UUSCI-2006-005", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-005.pdf", } @TechReport{SCI:Liv2006f, author = "O.E. Livne", title = "ICE Algorithm and the Davis Advection Scheme", number = "UUSCI-2006-006", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-006.pdf", } @TechReport{SCI:Liv2006g, author = "O.E. Livne", title = "ICE Algorithm for the Shocktube Problem", number = "UUSCI-2006-007", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-007.pdf", } @InProceedings{SCI:Lor2006a, author = "L. Lorenzo and R.S. MacLeod and R.T. Whitaker and G. Adluru and E.V.R. DiBella", title = "Level Sets and Shape Models for Segmentation of Cardiac Perfusion MRI", booktitle = c-SPIEMI2006, volume = "6144", pages = "1320--1331", year = "2006", keywords = "ip image processing signal processing, segmentation, cardiac heart, ncrr, ip gp image processing goemetry processing", url = "https://publications.utah.edu/publications/adluru06/SPIE_06.pdf", } @Article{SCI:Lor2006b, author = "P. Lorenzen and M.W. Prastawa and B. Davis and G. Gerig and E. Bullitt and S. Joshi", title = "Multi-Modal Image Set Registration and Atlas Formation", journal = "Med Image Anal", volume = "10", number = "3", pages = "440--451", year = "2006", month = "June", url = "https://publications.utah.edu/publications/lorenzen06/Lorenzen-MedIA-2006.pdf", } @InProceedings{SCI:Lu2006a, author = "H. Lu and M. Berzins and C.E. Goodyer and P.K. Jimack and M. Walkley", title = "Adaptive High-order Finite Element Solution of Transient Elastohydrodynamic Lubrication Problems", booktitle = "Proc. IMechE Part J: J. Engrg. Tribology", volume = "220", pages = "215--225", year = "2006", keywords = "high-order DG, adaptivity, EHL, line contact, transient", url = "https://publications.utah.edu/publications/lu06/LBGJW06.pdf", } @Article{SCI:Lu2006b, author = "H. Lu and M. Berzins and P.K. Jimack", title = "Application of the Adaptive Discontinuous Galerkin Method to Problems in Elastohydrodynamic Lubrication", journal = "Innovation in Engineering Computational Technology", pages = "169--191", year = "2006", editor = "B.H.V. Topping and G. Montero and R. Montenegro", publisher = "Saxe-Coburg Publications, Stirling", keywords = "computational mechanics, EHL", url = "https://publications.utah.edu/publications/lu06/LBJ06.pdf", } @PhdThesis{SCI:Lu2006c, author = "H. Lu", title = "High Order Finite Element Solution of Elastohydrodynamic Lubrication Problems", year = "2006", school = "School of Computing, University of Leeds", note = "Advisor: Martin Berzins", url = "https://publications.utah.edu/publications/Lu2006c/HLu_PhDTheis2006.pdf", } @Article{SCI:Luj2006a, author = "T.J. Lujan and M.S. Dalton and B.M. Thompson B.J. Ellis and J.A. Weiss", title = "Effect of ACL Deficiency on MCL Strains and Joint Kinematics", journal = "Journal of Biomechanical Engineering", pages = "(in press)", year = "2006", month = "November", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/lujan06/lujan_jbme_2007.pdf", } @Article{SCI:Luj2006b, author = "T.J. Lujan and C.J. Underwood and H.B. Henninger and B.M. Thompson and J.A. Weiss", title = "Effect of Dermatan Sulfate Glycosaminoglycans on the Quasi-Static Material Properties of the Human Medial Collateral Ligament", journal = "Journal of Orthopaedic Research", pages = "(in press)", year = "2006", month = "October", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/lujan06/lujan_JOR_2007.pdf", } @TechReport{SCI:Mar2006a, author = "H. Marmanis and C.W. Hamman and R.M. Kirby", title = "A One-Dimensional Model of the Navier-Stokes", number = "UUSCI-2006-012", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = ", navier-stokes", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-012.pdf", } @InCollection{SCI:Mci2006a, author = "L.C. McInnes and B.A. Allan and R. Armstrong and S.J. Benson and D.E. Bernholdt and T.L. Dahlgren and L.F. Diachin and M. Krishnan and J.A. Kohl and J.W. Larson and S. Lefantzi and J. Nieplocha and B. Norris and S.G. Parker and J. Ray and S. Zhou", title = "Parallel {PDE}-Based Simulations Using the Common Component Architecture", booktitle = "Numerical Solution of Partial Differential Equations on Parallel Computers", pages = "327--284", year = "2006", editor = "A.M. Bruaset and P. Bjorstad and A. Tveito", series = "Lecture Notes in Computational Science and Engineering", publisher = "Springer", isbn = "3-540-29076-1", keywords = "computational pde pdes computational partial differential equations, cca, simulation, parallel computing", } @Article{SCI:Mea2006a, author = "S. Means and A.J. Smith and J. Shepherd and J. Shadid and J. Fowler and R. Wojcikiewicz and T. Mazel and G.D. Smith and B.S. Wilson", title = "Reaction Diffusion Modeling of Calcium Dynamics with Realistic ER Geometry", journal = j-BJ, volume = "91", pages = "537--557", year = "2006", month = "March", url = "https://publications.utah.edu/publications/means06/means_biophysj_2006.pdf", } @InProceedings{SCI:Mel2006a, author = "I. Melatti and R. Palmer and G. Sawaya and Y. Yang and R.M. Kirby and G. Gopalakrishnan", title = "Parallel and Distributed Model Checking in Eddy", booktitle = "Model Checking Software: Proceedings of the 13th International SPIN Workshop ({SPIN} 2006)", volume = "3925/2006", pages = "108--125", year = "2006", location = "Austria", url = "https://publications.utah.edu/publications/melatti06/melatti_SPIN06.pdf", } @InProceedings{SCI:Mil2006a, author = "P. Miller and P.-T. Bremer and W. Cabot and A. Cook and D. Laney and A. Mascarenhas and V. Pascucci", title = "Application of Morse Theory to Analysis of Rayleigh-Taylor Topology", booktitle = "10th International Workshop on the Physics of Compressible Turbulent Mixing", year = "2006", } @Unpublished{SCI:Moo2006a, author = "C.R. Johnson and R. Moorhead and T. Munzner and H. Pfister and P. Rheingans and T. Yoo", title = "{NIH/NSF} Visualization Research Challenges Report Summary", pages = "66-73", year = "2006", note = "{NIH/NSF}", url = "https://publications.utah.edu/publications/Moo2006a/NIH-NSF-VRC-Report-Final.pdf", } @Unpublished{SCI:Mun2006a, author = "T. Munzner and C.R. Johnson and R. Moorhead and H. Pfister and P. Rheingans and T.S. Yoo", title = "{NIH-NSF} Visualization Research Challenges Report Summary", pages = "20--24", year = "2006", month = "March/April", note = "{NIH-NSF}", keywords = "forward problems inverse problems forward simulation inverse solutions, bioelectric fields", url = "https://publications.utah.edu/publications/Mun2006a/Vis_Viewpoints06.pdf", } @Article{SCI:Nag2006a, author = "S. Nagarajan and O. Portniaguine and D. Hwang and C.R. Johnson and K. Sekihara", title = "Controlled Support MEG Imaging", journal = "NeuroImage", volume = "15;33", number = "3", pages = "878--885", year = "2006", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse meg, finite elements, ip image processing signal processing", url = "https://publications.utah.edu/publications/nagarajan06/controlledsupport_neuroimage.pdf", } @Article{SCI:Nat2006a, author = "V. Natarajan and Y. Wang and P.-T. Bremer and V. Pascucci and B. Hamann", title = "Segmenting Molecular Surfaces", journal = "Computer Aided Geometric Design", volume = "23", number = "6", pages = "495--509", year = "2006", series = "Special Issue on Applications of Geometric Modeling in the Life Sciences", note = "(To appear)", } @Article{SCI:Nel2006a, author = "B. Nelson and R.M. Kirby", title = "Ray-Tracing Polymorphic Multi-Domain Spectral/hp Elements for Isosurface Rendering", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "12", number = "1", pages = "114--125", year = "2006", url = "https://publications.utah.edu/publications/nelson06/Nelson_VCG06.pdf", } @Article{SCI:Nem2006a, author = "O. Nemitz and M. Rumpf and T. Tasdizen and R.T. Whitaker", title = "Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data", journal = "Journal of Mathematical Imaging and Vision", volume = "27", number = "3", pages = "217--229", year = "2006", month = "April", } @Unpublished{SCI:Ode2006a, author = "J.T. Oden and J. Fish and C.R. Johnson and A. Laub and D. Srolovitz and T. Belytschko and T.J.R. Hughes and D. Keys and L. Petzold and S. Yip", title = "{NSF} Blue Ribbon Panel Report on Simulation Based Engineering Science", year = "2006", note = "NSF Report", url = "https://publications.utah.edu/publications/Ode2006a/TO_SBES_Debrief_050306.pdf", } @Article{SCI:Pal2006a, author = "R. Palmer and S. Barrus and Y. Yang and G. Gopalakrishnan and R.M. Kirby", title = "Gauss: A Framework for Verifying Scientific Computing Software", journal = "Electronic Notes on Theoretical Computer Science (ENTCS)", volume = "144", number = "3", pages = "95--106", year = "2006", month = "February", } @Article{SCI:Par2006a, author = "S.G. Parker", title = "A Component-Based Architecture for Parallel Multi-physics PDE Simulation", journal = "Future Generation Computer Systems (FGCS)", volume = "22", number = "1-2", pages = "204--216", year = "2006", publisher = "Elsevier", keywords = "forward simulation, computational pde pdes computational partial differential equations, parallel visualization", url = "https://publications.utah.edu/publications/sparker06/science.pdf", } @InCollection{SCI:Par2006b, author = "S.G. Parker and K. Zhang and K. Damevski and C.R. Johnson", title = "Integrating Component-Based Scientific Computing Software", booktitle = "Parallel Processing for Scientific Computing", pages = "271--288", year = "2006", editor = "M.A. Heroux and P. Raghavan and H.D. Simon", publisher = "{SIAM} Press", isbn = "0-89871-619-5", url = "https://publications.utah.edu/publications/sparker06/SIAM-PSE-Book05.pdf", } @Article{SCI:Par2006c, author = "S.G. Parker and J. Guilkey and T. Harman", title = "A Component-based Parallel Infrastructure for the Simulation of Fluid Structure Interaction", journal = "Engineering with Computers", volume = "22", number = "3-4", pages = "277--292", year = "2006", publisher = "Springer London", keywords = "fluid structure problems, mpm material point method, parallel computing, csafe c-safe", } @InProceedings{SCI:Par2006d, author = "S.G. Parker", title = "Composition of Components in Multiphysics Applications", booktitle = "Proceedings of the 12th SIAM Conference on Parallel Processing for Scientific Computing", year = "2006", location = "San Francisco, CA", note = "Presented at the Minisymposium on Parallel Dynamic Data Management Infrastructures for Scientific & Engineering Applications", keywords = "csafe c-safe", } @InProceedings{SCI:Par2006e, author = "S.G. Parker", title = "Component-Based Multi-Physics Simulations of Fires and Explosions", booktitle = "Proceedings of the 12th SIAM Conference on Parallel Processing for Scientific Computing", year = "2006", location = "San Francisco, CA", note = "Presented at the Minisymposium on Parallel Dynamic Data Management Infrastructures for Scientific & Engineering Applications", keywords = "csafe c-safe", } @InProceedings{SCI:Par2006f, author = "S.G. Parker", title = "Why do Software Engineering Methods Fail for HPC?", booktitle = "Presented at Architectures and Algorithms for Petascale Computing", volume = "Seminar 06071", year = "2006", month = "February", location = "Schloss Dagstuhl, Germany", } @InCollection{SCI:Par2006g, author = "S. Parker and K. Zhang and C. Damevski and C.R. Johnson", title = "Integrating Component-Based Scientific Computing Software", booktitle = "Parallel Processing for Scientific Computing", pages = "271--288", year = "2006", editor = "M.A. Heroux and P. Raghavan and H.D. Simon", publisher = "SIAM", month = "January", url = "https://publications.utah.edu/publications/Par2006g/Parker_Int-Comp-Based-Sci-Comp-Software2005.pdf", } @InCollection{SCI:Pas2006g, author = "V. Pascucci", title = "Topology Diagrams of Scalar Fields in Scientific Visualisation", booktitle = "Topological Data Structures for Surfaces", pages = "121--129", year = "2006", editor = "Sanjay Rana and Jo Wood", publisher = "Wiley-Blackwell", month = "May", note = "UCRL-BOOK-200013", } @InProceedings{SCI:Peg2006a, author = "V. Pegoraro and S.G. Parker", title = "Physically-Based Realistic Fire Rendering", booktitle = "Proceedings of the 2006 Eurographics Workshop on Natural Phenomena", pages = "51--59", year = "2006", keywords = "predictive ray tracing flame radiation, rtcenter", url = "https://publications.utah.edu/publications/vpegorar06/PhysicallyBasedRealisticFireRendering.pdf", } @InProceedings{SCI:Per2006a, author = "S. Pervez and G. Gopalakrishnan and R.M. Kirby and R. Thakur and W. Gropp", title = "Formal Verification of Programs that use MPI One-Sided Communications", booktitle = "Proceedings of EuroPVM-MPI 2006", year = "2006", month = "September 17-20", location = "Bonn, Germany", } @Article{SCI:San2006a, author = "A.R. Sanderson and R.M. Kirby and C.R. Johnson and L. Yang", title = "Advanced Reaction-Diffusion Models for Texture Synthesis", journal = "Journal of Graphics Tools", volume = "11", number = "3", pages = "47--71", year = "2006", url = "https://publications.utah.edu/publications/allen06/Sanderson_JGT_2006.pdf", } @InProceedings{SCI:San2006c, author = "A.R. Sanderson and X. Tricoche and C. Garth and S. Kruger and C. Sovinec and E. Held and J. Breslau", title = "Detection of Magnetic Nulls in Toroidal Geometry", booktitle = "Proceedings of the 48th Annual Meeting of the Division of Plasma Physics", year = "2006", keywords = "fusion", } @InProceedings{SCI:San2006d, author = "A.R. Sanderson and X. Tricoche and C. Garth and S. Kruger and C. Sovinec and E. Held and J. Breslau", title = "Visualizing Patterns in the Poincare Plot of a Magnetic Field", booktitle = "{IEEE} Visualization Conference 2006 Compendium", year = "2006", keywords = "fusion", url = "https://publications.utah.edu/publications/sanderson06/Sanderson_Vis_06.pdf", url = "https://publications.utah.edu/publications/sanderson06/Sanderson_Vis06_Poster.pdf", } @TechReport{SCI:Sch2006a, author = "J. Schreiner and C.E. Scheidegger and S. Fleishman and C.T. Silva", title = "Direct (Re)Meshing for Efficient Surface Processing", number = "UUSCI-2006-013", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, surface processing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-013.pdf", } @Article{SCI:Sch2006b, author = "J. Schreiner and C.E. Scheidegger and S. Fleishman and C.T. Silva", title = "Direct (Re)Meshing for Efficient Surface Processing", journal = "Computer Graphics Forum", volume = "25", number = "3", pages = "527--536", year = "2006", publisher = "Wiley-Blackwell", month = "Sep", keywords = "ip image processing signal processing, surface processing, ip gp image processing goemetry processing, meshing", url = "https://publications.utah.edu/publications/Sch2006b/direct_remeshing.pdf", } @Article{SCI:Sch2006c, author = "J. Schreiner and C.E. Scheidegger and C.T. Silva", title = "High-Quality Extraction of Isosurfaces from Regular and Irregular Grids", journal = "IEEE Trans. Vis. Comp. Graph.", volume = "12", number = "5", pages = "1205--1212", year = "2006", } @InProceedings{SCI:Sch2006d, author = "T. Schultz and B. Burgeth and J. Weickert", title = "Flexible Segmentation and Smoothing of {DT-MRI} Fields Through a Customizable Structure Tensor", booktitle = "Advances in Visual Computing", volume = "4291", pages = "455--464", year = "2006", editor = "G. Bebis and R. Boyle and B. Parvin and D. Koracin and P. Remagnino and A. V. Nefian and M. Gopi and V. Pascucci and J. Zara and J. Molineros and H. Theisel and T. Malzbender", series = "Lecture Notes in Computer Science", publisher = "Springer", keywords = "tensor field methods, diffusion tensor imaging, ncrr", } @Article{SCI:Ser2006a, author = "Y. Serinagaoglu and D.H. Brooks and R.S. MacLeod", title = "Improved Performance of {B}ayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources", journal = j-BME, volume = "53", number = "10", pages = "2024--2034", year = "2006", month = "October", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr, cibc, simulation math modeling", url = "https://publications.utah.edu/publications/serinagaoglu06/Serinagaoglu_IEEETBME2006.pdf", } @TechReport{SCI:She2006a, author = "J.F. Shepherd", title = "Hexahedral Mesh Generation Constraints", number = "UUSCI-2006-010", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-010.pdf", } @TechReport{SCI:She2006b, author = "J.F. Shepherd and C.J. Tuttle and C.T. Silva and Y. Zhang", title = "Quality Improvement and Feature Capture in Hexahedral Meshes", number = "UUSCI-2006-029", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "feature capture, hexahedral meshes, adaptive mesh generation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-029.pdf", } @Article{SCI:She2006c, author = "S.J. Sherwin and R.M. Kirby and J. Peiro and R.L. Taylor and O.C. Zienkiewicz", title = "On 2D Elliptic Discontinuous Galerkin Methods", journal = "International Journal of Numerical Methods in Engineering", volume = "65", number = "5", pages = "752--784", year = "2006", url = "https://publications.utah.edu/publications/sherwin06/Sherwin_J-NumMethEng06.pdf", } @InProceedings{SCI:Ste2006a, author = "A.J. Stephens and S. Boulos and J. Bigler and I. Wald and S.G. Parker", title = "An Application of Scalable Massive Model Interaction using Shared-Memory Systems", booktitle = c-EGPGV2006, pages = "19--26", year = "2006", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt, manta, rtcenter", url = "https://publications.utah.edu/publications/abe06/manta-egpgv06-final.pdf", } @InProceedings{SCI:Sti2006a, author = "J.G. Stinstra and S.F. Roberts and J.B. Pormann and R.S. MacLeod and C.S. Henriquez", title = "A Model of 3D Propagation in Discrete Cardiac Tissue", booktitle = "Proceedings of Computers in Cardiology 2006", volume = "33", pages = "41", year = "2006", url = "https://publications.utah.edu/publications/stinstra06/Stinstra_CinC2006.pdf", } @InProceedings{SCI:Str2006a, author = "J. Strasser and V. Pascucci and K.-L. Ma", title = "Multi-layered Image Caching for Distributed Rendering of Large Multiresolution Datasets", booktitle = "Eurographics Symposium on Parallel Graphics and Visualization", pages = "171--177", year = "2006", editor = "Bruno Raffin and Alan Heirich and Luis Paulo Santos", publisher = "Eurographics Association", address = "Braga, Portugal", isbn = "3-905673-40-1", issn = "1727-348X", } @InProceedings{SCI:Sty2006a, author = "M. Styner and M. Jomier and G. Gerig", title = "Closed and Open Source Neuroimage Analysis Tools and Libraries at {UNC}", booktitle = "Proceedings of {IEEE} International Symposium on Biomedical Imaging ({ISBI}), Special Session: Open Source", pages = "702--705", year = "2006", url = "https://publications.utah.edu/publications/styner06/Styner_ISBI2006a.pdf", } @Article{SCI:Tar2006a, author = "D.M. Tartakovsky and D. Xiu", title = "Stochastic Analysis of Transport in Tubes with Rough Walls", journal = "Journal of Computational Physics", volume = "217", number = "1", pages = "248--259", year = "2006", keywords = "Random domain, Stochastic inputs, Differential equations, Uncertainty quantification, Stokes flow, Dispersion", url = "https://publications.utah.edu/publications/tartakovsky06/Tartakovsky_JCP2006.pdf", } @Article{SCI:Tri2006a, author = "X. Tricoche and X. Zheng and A. Pang", title = "Visualizing the Topology of Symmetric, Second-Order, Time-varying Two-Dimensional Tensor Fields", journal = "Visualization and Processing of Tensor Fields", pages = "225--240", year = "2006", publisher = "Springer", } @Article{SCI:Tri2006b, author = "X. Tricoche and C. Garth", title = "Topological Methods for Visualizing Vortical Flows", journal = "Mathematical Foundations of Visualization, Computer Graphics, and Massive Data Exploration", year = "2006", publisher = "Springer", } @Article{SCI:Ver2006a, author = "A.I. Veress and W.P. Segars and J.A. Weiss and B.M.W. Tsui and G.T. Gullberg", title = "Normal and Pathological NCAT Image and Phantom Data Based on Physiologically Realistic Left Ventricle Finite Element Models", journal = "{IEEE} Transactions on Medical Imaging", volume = "25", number = "12", pages = "1604--1616", year = "2006", keywords = "finite elements, cardiac heart, mrl", url = "https://publications.utah.edu/publications/veress06/veress_tmi_2006.pdf", } @InProceedings{SCI:Vie2006a, author = "K. Vieira and A. Silva and N. Pinto and E.S. Moura and J. Cavalcanti and J. Freire", title = "A Fast and Robust Method for Web Page Template Detection and Removal", booktitle = "Proceedings of the 15th ACM International Conference on Information and Knowledge Management (CIKM)", pages = "258--267", year = "2006", month = "November", location = "Arlington, VA", url = "https://publications.utah.edu/publications/vieira06/Vieira_CIKM2006a.pdf", } @TechReport{SCI:Wal2006a, author = "I. Wald and V. Havran", title = "On building fast kd-Trees for Ray Tracing, and on doing that in O(N log N)", number = "UUSCI-2006-009", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-009.pdf", } @InProceedings{SCI:Wal2006b, author = "I. Wald and T. Ize and A. Kensler and A. Knoll and S.G. Parker", title = "Ray Tracing Animated Scenes using Coherent Grid Traversal", booktitle = "Proceedings of the {ACM} {SIGGRAPH} 2006 Conference", pages = "485--493", year = "2006", publisher = "ACM", address = "New York, NY, USA", issn = "0730-0301", keywords = "rtrt real-time ray tracing, rtcenter", url = "https://publications.utah.edu/publications/Wal2006b/p485-wald.pdf", } @TechReport{SCI:Wal2006c, author = "I. Wald and S. Boulosy and P. Shirley", title = "Ray Tracing Deformable Scenes using Dynamic Bounding Volume Hierarchies", number = "UUSCI-2006-015", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-015.pdf", } @TechReport{SCI:Wal2006d, author = "I. Wald and T. Ize and A. Kensler and A. Knoll and S.G. Parker", title = "Ray Tracing Animated Scenes using Coherent Grid Traversal", number = "UUSCI-2006-014", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-014.pdf", } @TechReport{SCI:Wal2006e, author = "I. Wald and S. Boulos and P. Shirley", title = "Ray Tracing Deformable Scenes using Dynamic Bounding Volume Hierarchies", number = "UUSCI-2006-023", year = "2006", institution = "University of Utah", type = "{SCI} Institute Technical Report", note = "Updated version of UUSCI-2006-015", keywords = "rtcenter", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2006-023.pdf", } @Article{SCI:Wal2006f, author = "I. Wald", title = "Realtime Ray Tracing and Interactive Global Illumination", journal = "IT - Information Technology", year = "2006", note = "Invited article in german.", keywords = "rtcenter, rtrt real-time ray tracing, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/wald06/it2006.pdf", } @InProceedings{SCI:Wal2006g, author = "I. Wald and A. Dietrich and C. Benthin and A. Efremov and T. Dahmen and J. Gunther and V. Havran and P. Slusallek and H.-P. Seidel", title = "Applying Ray Tracing for Virtual Reality and Industrial Design", booktitle = "Proceedings of the 2006 {IEEE} Symposium on Interactive Ray Tracing", pages = "177--185", year = "2006", keywords = "rtcenter", url = "https://publications.utah.edu/publications/wald06/rtvr.pdf", } @Article{SCI:Wei2006a, author = "J.A. Weiss and B.J. Maakestad", title = "Permeability of Human Medial Collateral Ligament Transverse to the Collagen Fiber Direction", journal = j-BM, volume = "39", number = "2", pages = "276--283", year = "2006", keywords = "computational biomechanics, angiogenesis, multiscale tissue modeling multiscale tissue simulation", url = "https://publications.utah.edu/publications/weiss06/weiss_j_biomech_2006.pdf", } @InCollection{SCI:Wei2006b, author = "J.A. Weiss and A.I. Veress and G.T. Gullberg and N.S. Phatak and Q. Sun and D.L. Parker and R.D. Rabbitt", title = "Strain measurement using deformable image registration", booktitle = "Mechanics of Biological Tissue", pages = "489--501", year = "2006", editor = "G.A. Holzapfel, R.W. Ogden", publisher = "Springer", url = "https://publications.utah.edu/publications/Wei2006b/weiss_mbt_2006.pdf", } @Article{SCI:Wol2006a, author = "C.H. Wolters and A. Anwander and X. Tricoche and D.M. Weinstein and M.A. Koch and R.S. MacLeod", title = "Influence of Tissue Conductivity Anisotropy on EEG/MEG Field and Return Current Computation in a Realistic Head Model: A Simulation and Visualization Study Using High-Resolution Finite Element Modeling", journal = j-NI, volume = "30", number = "3", pages = "813--826", year = "2006", month = "April", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, neuro brain, ncrr", url = "https://publications.utah.edu/publications/wolters06/Tissue_Cond_Anisotropy.pdf", } @Article{SCI:Wol2006b, author = "C.H. Wolters and A. Anwander and G. Berti and U. Hartmann", title = "Geometry-Adapted Hexahedral Meshes Improve Accuracy of Finite Element Method Based EEG Source Analysis", journal = "{IEEE} Transactions on Biomedical Engineering", volume = "54", number = "8", pages = "1446--1453", year = "2006", month = "August", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, finite elements, ncrr, cibc, bioelectric fields", url = "https://publications.utah.edu/publications/wolters06/WoltersEtAl_TBME00397-2006.R1.pdf", } @Article{SCI:Wol2006c, author = "D. G{\"u}llmar and J. Haueisen and M. Eiselt and F. Giessler and L. Flemming and A. Anwander and T. Kn{\"o}sche and C.H. Wolters and M. D{\"u}mpelmann and D.S. Tuch and J.R. Reichenbach", title = "Influence of Anisotropic Conductivity on EEG Source Reconstruction: Investigations in a Rabbit Model", journal = "IEEE Trans. Biomed. Eng.", volume = "53", number = "9", pages = "1841--1850", year = "2006", keywords = "ncrr, cibc, inverse eeg, source localization", } @Article{SCI:Wym2006a, author = "C. Wyman and S.G. Parker and P. Shirley and C.D. Hansen", title = "Interactive Display of Isosurfaces with Global Illumination", journal = "IEEE Transactions on Visualization and Comptuer Graphics", volume = "12", number = "2", year = "2006", month = "March/April", keywords = "volume rendering, rtrt real-time ray tracing, scientific visualization", url = "https://publications.utah.edu/publications/wyman06/Wyman_TVCG2006.pdf", } @Article{SCI:Xiu2006a, author = "D. Xiu and D.M. Tartakovsky", title = "Numerical Methods for Differential Equations in Random Domains", journal = "SIAM Journal on Scientific Computing", volume = "28", number = "3", pages = "1167--1185", year = "2006", keywords = "random domain, stochastic inputs, differential equations, uncertainty quantification", url = "https://publications.utah.edu/publications/xiu06/Xiu_SIAM_JSC2006.pdf", } @InProceedings{SCI:Xu2006a, author = "S. Xu and M. Styner and B. Davis and S. Joshi and G. Gerig", title = "Group Mean Differences of Voxel and Surface Objects via Nonlinear Group Averaging", booktitle = "Proceedings of {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "758--761", year = "2006", month = "April", url = "https://publications.utah.edu/publications/xu06/ISBI06_Xu.pdf", } @InProceedings{SCI:Yil2006a, author = "B. Yilmaz and R.S. Macleod", title = "Instance Selection for Estimation of Epicardial Activation Sequence from Venous Catheter Measurements", booktitle = "Proceedings of the 28th {IEEE} {EMBS} Annual International Conference", pages = "3982--3985", year = "2006", url = "https://publications.utah.edu/publications/yilmaz06/Yilmaz_EMBS2006.pdf", } @Article{SCI:Yus2006a, author = "P.A. Yushkevich and J. Piven and H.C. Hazlett and R.G. Smith and S. Ho and J.C. Gee and G. Gerig", title = "User-Guided 3D Active Contour Segmentation of Anatomical Structures: Significantly Improved Efficiency and Reliability", journal = "NeuroImage", volume = "31", pages = "1116--1128", year = "2006", note = "A NeuroImage Top Cited Paper!", url = "https://publications.utah.edu/publications/yushkevich06/Yushkevich_NeuroImage2006a.pdf", } @Article{SCI:Zhe2006a, author = "X. Zheng and X. Tricoche and A. Pang", title = "Degenerate 3D Tensors", journal = "Visualization and Processing of Tensor Fields", pages = "241--256", year = "2006", publisher = "Springer", } @Article{SCI:Ale2005a, author = "Y. Alexeev and B.A. Allan and R.C. Armstrong and D.E. Bernholdt and T.L. Dahlgren and D. Gannon and C.L. Janssen and J.P. Kenny and M. Krishnan and J.A. Kohl and G. Kumfert and L.C. McInnes and J. Nieplocha and S.G. Parker and C. Rasmussen and T.L. Windus", title = "Component-Based Software for High-Performance Scientific Computing", journal = "Journal of Physics: Conference Series", volume = "16", pages = "536--540", year = "2005", publisher = "IOP Publishing", month = "January", url = "https://publications.utah.edu/publications/Ale2005a/jpconf5_16_073.pdf", } @Article{SCI:Alt2005a, author = "O. Alter and G.H. Golub", title = "Reconstructing the Pathways of a Cellular System from Genome-Scale Signals by Using Matrix and Tensor Computations", title_url = "http://www.alterlab.org/network_decomposition/", journal = "Proceedings of the National Academy of Sciences", volume = "102", number = "49", pages = "17559--17564", year = "2005", publisher = "Proceedings of the National Academy of Sciences", month = "November", url = "https://publications.utah.edu/publications/Alt2005a/Alter_PNAS2005.pdf", url = "https://publications.utah.edu/publications/Alt2005a/Alter_PNAS2005-appendix.pdf", } @Article{SCI:And2005a, author = "A.E. Anderson and C.L. Peters and B.D. Tuttle and J.A. Weiss", title = "A Subject-Specific Finite Element Model of the Pelvis: Development, Validation and Sensitivity Studies", journal = j-JBE, volume = "127", number = "3", pages = "364--373", year = "2005", keywords = "finite elements, computational mechanics, computational biomechanics", url = "https://publications.utah.edu/publications/anderson05/Anderson_JBME_2005.pdf", } @TechReport{SCI:Awa2005a, author = "S.P. Awate and T. Tasdizen and R.T. Whitaker", title = "Nonparametric Statistics of Image Neighborhoods for Unsupervised Texture Segmentation", number = "UUSCI-2005-003", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "segmentation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-003.pdf", } @TechReport{SCI:Awa2005b, author = "S.P. Awate and R.T. Whitaker", title = "Higher-Order Image Statistics for Unsupervised, Information-Theoretic, Adaptive, Image Filtering", number = "UUSCI-2005-004", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-004.pdf", } @TechReport{SCI:Awa2005c, author = "S.P. Awate and R.T. Whitaker", title = "Nonparametric Neighborhood Statistics for {MRI} Denoising", number = "UUSCI-2005-005", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-005.pdf", } @InProceedings{SCI:Awa2005e, author = "S.P. Awate and R.T. Whitaker", title = "Nonparametric Neighborhood Statistics for {MRI} Denoising", booktitle = "In Proc. Int. Conf. Information Processing in Medical Imaging ({IPMI}), 2005. Lecture Notes in Computer Science", volume = "3565", pages = "677--688", year = "2005", month = "July", keywords = "ip image processing signal processing, ncrr", url = "https://publications.utah.edu/publications/awate05/Awate_nonparametric_neighborhood.pdf", } @InProceedings{SCI:Awa2005f, author = "S.P. Awate and R.T. Whitaker", title = "Higher-Order Image Statistics for Unsupervised, Information-Theoretic, Adaptive, Image Filtering", booktitle = "Proceedings of the {IEEE} Int. Conf. Computer Vision and Pattern Recognition ({CVPR})", pages = "44--51", year = "2005", keywords = "ip image processing signal processing, ncrr", url = "https://publications.utah.edu/publications/awate05/Awate_UINTA_CVPR.pdf", } @Article{SCI:Awa2005g, author = "S.P. Awate and R.T. Whitaker", title = "Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration", journal = j-PAMI, volume = "28", number = "3", pages = "364--376", year = "2005", keywords = "ip image processing signal processing, ncrr", url = "https://publications.utah.edu/publications/awate05/Awate_JPAMI05.pdf", } @InProceedings{SCI:Bar2005a, author = "L. Barbosa and A.C. Salgado and F. de Carvalho and J. Robin and J. Freire", title = "Looking at both the Present and the Past to Efficiently Update Replicas of Web Content", booktitle = "Proceedings of the 7th Annual ACM International Workshop on Web Information and Data Management", pages = "75--80", year = "2005", url = "https://publications.utah.edu/publications/barbosa05/Barbosa_WWIDM2005a.pdf", } @InProceedings{SCI:Bar2005b, author = "D. Barbosa and J. Freire and A. Mendelzon", title = "Designing Information-Preserving Mapping Schemes for XML", booktitle = "Proceedings of the 31st International Conference on Very Large Data Bases", pages = "109--120", year = "2005", location = "Trondheim, Norway", url = "https://publications.utah.edu/publications/barbosa05/Barbosa_VLDB2005.pdf", } @InProceedings{SCI:Bav2005a, author = "L. Bavoil and S.P. Callahan and P.J. Crossno and J. Freire and C.E. Scheidegger and C.T. Silva and H.T. Vo", title = "Vistrails: Enabling Interactive Multiple-View Visualizations", booktitle = c-VIS2005, pages = "18", year = "2005", keywords = "scientific visualization, pses", url = "https://publications.utah.edu/publications/bavoil05/vistrails.pdf", } @InProceedings{SCI:Ber2005a, author = "F. Bertrand and R. Bramley and K. Damevski and D. Bernholdt and J. Kohl and J. Larson and A. Sussman", title = "Data Redistribution and Remote Method Invocation in Parallel Component Architectures", booktitle = c-IPDPS2005, volume = "1", pages = "40--42", year = "2005", note = "Awarded Best Paper", } @TechReport{SCI:Ber2005b, author = "F.F. Bernardon and S.P. Callahan and J.L.D. Comba and C.T. Silva", title = "Volume Rendering of Time-Varying Scalar Fields on Unstructured Meshes", number = "UUSCI-2005-006", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scalar field methods, volume rendering", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-006.pdf", } @InProceedings{SCI:Ber2005c, author = "M. Berzins and R.M. Kirby and C.R. Johnson", title = "Integrating Teaching and Research in HPC: Experiences and Opportunities", booktitle = c-ICCS2005, pages = "36--43", year = "2005", location = "Atlanta, GA", url = "https://publications.utah.edu/publications/berzins05/Teaching_and_Research_HPC.pdf", } @Article{SCI:Ber2005d, author = "M. Berzins", title = "Preserving Positivity for Hyperbolic PDEs Using Variable-Order Finite Elements with Bounded Polynomials", journal = "Applied Numerical Mathematics", volume = "52", number = "2-3", pages = "197--217", year = "2005", month = "February", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational pde pdes computational partial differential equations", url = "https://publications.utah.edu/publications/berzins05/GENhp.pdf", } @Article{SCI:Bon2005a, author = "C. Bonifasi-Lista and S.P. Lake and M. Small and J.A. Weiss", title = "Viscoelastic Properties of the Human Medial Collateral Ligament Under Longitudinal, Transverse and Shear Loading", journal = j-OR, volume = "23", number = "1", pages = "67--76", year = "2005", month = "January", keywords = "computational mechanics, computational biomechanics, angiogenesis", url = "https://publications.utah.edu/publications/lista05/bonifasi_jor_2005.pdf", } @InProceedings{SCI:Bre2005b, author = "P.-T. Bremer and V. Pascucci and B. Hamann", title = "Maximizing Adaptivity in Hierarchical Topological Models", booktitle = "International Conference on Shape Modeling and Applications 2005", year = "2005", publisher = "IEEE", } @Article{SCI:Bul2005a, author = "E. Bullitt and D. Zeng and G. Gerig and S. Aylward and S. Joshi and J.K. Smith and W. Lin and M. Ewend", title = "Vessel Tortuosity and Brain Tumor Malignancy: A Blinded Study", journal = "Acad Radiol", volume = "12", number = "10", pages = "1232--1240", year = "2005", month = "October", } @Article{SCI:But2005a, author = "C.R. Butson and C.C. McIntyre", title = "Tissue and electrode capacitance reduce neural activation volumes during deep brain stimulation", journal = "Clinical Neurophysiology", volume = "116", number = "10", pages = "2490--500", year = "2005", month = "October", keywords = "Algorithms, Axons, Axons: physiology, Computer Simulation, Deep Brain Stimulation, Electric Capacitance, Electrodes, Extracellular Space, Extracellular Space: physiology, Finite Element Analysis, Implanted, Models, Myelinated, Myelinated: physiology, Nerve Fibers, Neurological, Neurons, Neurons: physiology, Poisson Distribution, Statistical", url = "https://publications.utah.edu/publications/But2005a/Butson_ClinNeurophys2005.pdf", } @Article{SCI:Cal2005a, author = "S.P. Callahan and M. Ikits and J.L.D. Comba and C.T. Silva", title = "Hardware-Assisted Visibility Ordering for Unstructured Volume Rendering", journal = j-TVCG, volume = "11", number = "3", pages = "285--295", year = "2005", publisher = "{IEEE} Educational Activities Department", issn = "1077-2626", keywords = "scalar field methods, volume rendering, visibility ordering, GPU, tetrahedral meshes, unstructured volume rendering", url = "https://publications.utah.edu/publications/stevec05/HAVS.pdf", } @InProceedings{SCI:Cal2005b, author = "F. Calderero and A. Ghodrati and D.H. Brooks and G. Tadmor and R.S. MacLeod", title = "A Method to Reconstruct Activation Wavefronts Without Isotropy Assumptions Using a Level Sets Approach", booktitle = "Functional Imaging and Modeling of the Heart: Third International Workshop (FIMH 2005)", pages = "195", year = "2005", location = "Barcelona, June 2-4", keywords = "ncrr", } @InProceedings{SCI:Cal2005c, author = "S.P. Callahan and J.L.D. Comba and P. Shirley and C.T. Silva", title = "Interactive Rendering of Large Unstructured Grids Using Dynamic Level-of-Detail", booktitle = c-VIS2005, pages = "26", year = "2005", keywords = "interactive rt distributed interactive ray tracing dirt, interactive volume rendering, multiresolution meshes, level-of-detail, tetrahedral meshes", url = "https://publications.utah.edu/publications/stevec05/dynamic_lod.pdf", } @MastersThesis{SCI:Cal2005d, author = "S.P. Callahan", title = "The k-Buffer and its Applications to Volume Rendering", year = "2005", school = "School of Computing, University of Utah", note = "Masters Thesis", keywords = "volume rendering", url = "https://publications.utah.edu/publications/stevec05/thesis.pdf", } @InProceedings{SCI:Cor2005a, author = "I. Corouge and P.T. Fletcher and S. Joshi and J.H. Gilmore and G. Gerig", title = "Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor {MRI} Analysis", booktitle = "Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv", volume = "8 (Pt. 1)", pages = "131--139", year = "2005", url = "https://publications.utah.edu/publications/corouge05/MICCAI05_Corouge_DT.pdf", } @InProceedings{SCI:Dal2005a, author = "M.S. Dalton and B.J. Ellis and T.J. Lujan and J.A. Weiss", title = "MCL Insertion Site and Contact Forces in the ACL-Deficient Knee", booktitle = "Proceedings, 51th Annual Orthopaedic Research Society Meeting", volume = "30", pages = "814", year = "2005", keywords = "computational mechanics, computational biomechanics", url = "https://publications.utah.edu/publications/dalton05/dalton_ORS_05.pdf", } @Article{SCI:Deb2005a, author = "R.E. Debski and J.A. Weiss and W.J. Newman and S.M. Moore and P.J. McMahon", title = "Stress and Strain in the Anterior Band of the Inferior Glenohumeral Ligament During a Simulated Clinical Examination", journal = "Journal of Shoulder and Elbow Surgery", volume = "14", pages = "24S--31S", year = "2005", keywords = "computational biomechanics", url = "https://publications.utah.edu/publications/debski05/debski_JSES_AB-IGHL_FEM.pdf", } @Article{SCI:Dem2005a, author = "D.E. DeMarle and C.P. Gribble and S. Boulos and S.G. Parker", title = "Memory Sharing for Interactive Ray Tracing on Clusters", journal = "Parallel Computing", volume = "31", number = "2", pages = "221--242", year = "2005", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/demarle05/dirt-jpdc04.pdf", } @Article{SCI:Fif2005b, author = "P. Fife and T. Wei and J.C. Klewicki and P.A. McMurtry", title = "Stress Gradient Balance Layers and Scale Hierarchies in Wall-Bounded Flows", journal = "Journal of Fluid Mechanics", volume = "532", pages = "165--189", year = "2005", month = "June", url = "https://publications.utah.edu/publications/Fif2005b/Fife_JFM2005.pdf", } @Article{SCI:Fos2005a, author = "M. Foskey and B. Davis and L. Goyal and S. Chang and E. Chaney and N. Strehl and S. Tomei and J. Rosenman and S. Joshi", title = "Large Deformation Three-Dimensional Image Registration in Image-Guided Radiation Therapy", journal = "Phys Med Biol", volume = "50", number = "24", pages = "5869--5892", year = "2005", month = "December 21", url = "https://publications.utah.edu/publications/foskey05/Foskey05_submission.pdf", } @InProceedings{SCI:Fou2005a, author = "N. Fout and H. Akiba and K-L. Ma and A.E. Lefohn and J.M. Kniss", title = "High-Quality Rendering of Compressed Volume Data Formats", booktitle = "Proceedings of The Joint {EUROGRAPHICS-IEEE} {VGTC} Symposium on Visualization 2005", year = "2005", keywords = "scalar field methods, volume rendering", url = "https://publications.utah.edu/publications/fout05/fout_eurovis05.pdf", } @InProceedings{SCI:Gen2005a, author = "S.E. Geneser and S. Choe and R.M. Kirby and R.S. MacLeod", title = "Influence of Stochastic Organ Conductivity in 2D ECG Forward Modeling: A Stochastic Finite Element Study", booktitle = c-BEMNFSI2005, pages = "5528--5531", year = "2005", keywords = "forward problems inverse problems forward simulation inverse solutions, forward simulation, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/geneser05/Geneser_Stochastic_FE_study.pdf", } @Article{SCI:Gho2005a, author = "A. Ghodrati and D.H. Brooks and G. Tadmor and B.B. Punske and R.S. MacLeod", title = "Wavefront-based Inverse Electrocardiography using an Evolving Curve State Vector and Phenomenological Propagation and Potential Models", journal = "IJBEM", volume = "7", number = "2", pages = "210--213", year = "2005", keywords = "cardiac heart, ncrr, cibc", } @TechReport{SCI:Goo2005a, author = "C.E. Goodyer and M. Berzins", title = "Parallelisation and Scalability Issues in a Multilevel EHL Solver", number = "2005.05", year = "2005", institution = "School of Computing, University of Leeds", type = "Report", url = "https://publications.utah.edu/publications/goodyer05/2005_05.pdf", } @InProceedings{SCI:Gra2005a, author = "L. Grady and T. Tasdizen", title = "A Geometric Multigrid Approach to Solving the 2D Inhomogeneous Laplace Equation with Internal Dirichlet Boundary Conditions", booktitle = c-ICIP, volume = "2", pages = "642--645", year = "2005", month = "September", keywords = "ip image processing signal processing", } @Article{SCI:Gue2004a, author = "C. Guerra and V. Pascucci", title = "Line-Based Object Recognition Using Hausdorff Distance: From Range Images to Molecular Secondary Structure", journal = "Image and Vision Computing", volume = "23", number = "4", pages = "405-415", year = "2005", month = "April", note = "UCRL-JRNL-208551", } @Article{SCI:Gui2005a, author = "J.E. Guilkey and J.B. Hoying JB and J.A. Weiss", title = "Computational modeling of multicellular constructs with the Material Point Method", journal = "Journal of Biomechanics", pages = "(published online)", year = "2005", month = "June", keywords = "computational mechanics, mpm material point method, computational biomechanics, angiogenesis", url = "https://publications.utah.edu/publications/guilkey05/Journal_Biomech2005.pdf", } @Article{SCI:Gul2005a, author = "D. Gullmar and J.R. Reichenbach and A. Anwander and T. Knosche and C.H. Wolters and M. Eiselt and J. Haueisen", title = "Influence of Anisotropic Conductivity of the White Matter Tissue on EEG Source Reconstruction - An FEM Simulation Study", journal = j-IJBEM, volume = "7", number = "1", pages = "108--110", year = "2005", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, focusing inversion, forward simulation, neuro brain, ncrr, simulation math modeling, bioelectric fields", url = "https://publications.utah.edu/publications/gullmar05/Gullmar_IJBEM.pdf", } @InProceedings{SCI:Guo2005a, author = "H. Guo and A. Rangarajan and S. Joshi", title = "3-D Diffeomorphic Shape Registration on Hippocampal Data Sets", booktitle = "Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv", volume = "8 (Pt. 2)", pages = "984--991", year = "2005", } @InProceedings{SCI:Gyu2005a, author = "A. Gyulassy and V. Natarajan and V. Pascucci and P.-T. Bremer and B. Hamann", title = "Topology-based Simplification for Feature Extraction from 3D Scalar Fields", booktitle = "Proceedings of the {IEEE} Conference on Visualization ({VIS}-05)", pages = "275--280", year = "2005", month = "October", } @TechReport{SCI:Ham2005a, author = "C.W. Hamman and R.M. Kirby and M. Berzins", title = "Parallelization and Scalability of a Spectral Element Solver", number = "UUSCI-2005-011", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "parallel processing, scaling, spectral element solver", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-011.pdf", } @Book{SCI:Han2005a, author = "C.D. Hansen and C.R. Johnson", title = "The Visualization Handbook", year = "2005", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, forward simulation, cfd computational fluid dynamics, computational mechanics, computational pde pdes computational partial differential equations, pse grid computing, scalar field methods, isosurface extraction, volume rendering, transfer functions, rtrt real-time ray tracing, vector field methods, visual haptic workbench, tensor field methods, vr virtual reality haptics, remote visualization, remote isosurface visualization, parallel visualization, ip image processing signal processing, surface processing, scirun, biopse, ncrr", } @InCollection{SCI:Han2005b, author = "Q. Han and S.M. Pizer and D. Merck and S. Joshi and J.-Y. Jeong", title = "Multi-figure Anatomical Objects for Shape Statistics", booktitle = "Lecture Notes in Computer Science", pages = "701-712", year = "2005", editor = "G. Christensen and M. Sonka", publisher = "Springer", url = "https://publications.utah.edu/publications/Han2005b/IPMI05_Han.pdf", } @Article{SCI:Har2005a, author = "D.E. Hart and C.E. Goodyer and M. Berzins and P.K. Jimack and L.E. Scales", title = "Adjoint Error Estimation for EHL-Like Models", journal = j-IJNMF, volume = "47", number = "10-11", pages = "1069--1075", year = "2005", keywords = "EHL, computational mechanics, ehl", url = "https://publications.utah.edu/publications/hart05/HGBJS04.pdf", } @InProceedings{SCI:Haw2005a, author = "P. Hawkes and G. Kindlmann and D. Weinstein and G.M. Jones and C. Keller", title = "Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors", booktitle = "Proceedings of 2005 SMI Conference, 4th Annual Meeting of the Society for Molecular Imaging", year = "2005", location = "Cologne, Germany", } @Article{SCI:Hop2005a, author = "B. Hopenfeld and J.G. Stinstra and R.S. MacLeod", title = "The Effect of Conductivity on {ST}-Segment Epicardial Potentials Arising from Subendocardial Ischemia", journal = j-ABE, volume = "33", number = "6", pages = "751--763", year = "2005", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/hopenfeld05/condsensrev.pdf", } @InCollection{SCI:Iki2005a, author = "M. Ikits and J.D. Brederson", title = "The Visual Haptic Workbench", booktitle = "The Visualization Handbook", pages = "431--447", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "vr virtual reality haptics, uve", url = "https://publications.utah.edu/publications/ikits05/ch22_ikits.pdf", } @InProceedings{SCI:Ion2005a, author = "I. Ionescu and J. Guilkey and M. Berzins and R.M. Kirby and J.A. Weiss", title = "Computational Simulation of Penetrating Trauma in Biological Soft Tissues Using the Material Point Method", booktitle = "Proceedings, Medicine Meets Virtual Reality", volume = "13", pages = "213--218", year = "2005", editor = "James D Westwood et al.", publisher = "IOS Press", isbn = "1-58603-498-7", keywords = "computational mechanics, computational biomechanics, mpm material point method", url = "https://publications.utah.edu/publications/ionescu05/ionescu_mmvr_2005.pdf", } @Article{SCI:Kea2005a, author = "P.J. Keall and S. Joshi and S.S. Vedam and J.V. Siebers and V.R. Kini and R. Mohan", title = "Four-Dimensional Radiotherapy Planning for DMLC-Based Respiratory Motion Tracking", journal = "Med Phys", volume = "32", number = "4", pages = "942--951", year = "2005", month = "April", } @InProceedings{SCI:Kho2005a, author = "E.G. Kh{\"o}lmovski and E.V.R. DiBella and A.A. Samsonov", title = "Accurate Assessment of the Arterial Input Function using {MRI} with Radial Sampling", booktitle = c-SCMR2005, volume = "7", pages = "292--294", year = "2005", keywords = "cardiac heart, ncrr, Cardiad perfusion MRI, Arterial Input Function, cardiad perfusion mri, arterial input function, bisti", } @Article{SCI:Kho2005b, author = "E.G. Kh{\"o}lmovski and D.L. Parker", title = "Application of Phase Consistency to Improve Time Efficiency and Image Quality in Dual Echo Black Blood Carotid Angiography", journal = "Magn Reson Imaging", volume = "23", number = "6", pages = "711--722", year = "2005", url = "https://publications.utah.edu/publications/kholmovski05/MagResImaging2005.pdf", } @InProceedings{SCI:Kho2005c, author = "E.G. Kh{\"o}lmovski and E.V.R. DiBella and A.A. Samsonov", title = "Perfusion {MRI} with Radial Sampling: Arterial Input Function and Tissue Enhancement Curve Assessment", booktitle = "Proc. Intl. Soc. Mag. Reson.", pages = "252", year = "2005", note = "Abstract", url = "https://publications.utah.edu/publications/kholmovski05/Kholmovski_ISMR2005.pdf", } @InProceedings{SCI:Kho2005d, author = "E.G. Kh{\"o}lmovski and A.A. Samsonov", title = "{GARSE}: Generalized Autocalibrating Reconstruction for Sensitivity Encoded MRI", booktitle = "Proc. Intl. Soc. Mag. Reson.", pages = "2672", year = "2005", note = "Abstract", url = "https://publications.utah.edu/publications/kholmovski05/Kholmovski_ISMR2005b.pdf", } @Article{SCI:Kin2005a, author = "G.L. Kindlmann and D.M. Weinstein and G.M. Jones and C.R. Johnson and M.R. Capecchi and C. Keller", title = "Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors", journal = "Journal of Molecular Imaging", volume = "4", number = "4", pages = "417--424", year = "2005", keywords = "ncrr, ip image processing signal processing", url = "https://publications.utah.edu/publications/gk05/Kindlmann_et-al_JMI_2005.pdf", } @InCollection{SCI:Kir2005a, author = "R.M. Kirby and D.F. Keefe and D.H. Laidlaw", title = "Painting and Visualization", booktitle = "The Visualization Handbook", pages = "873--891", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", url = "https://publications.utah.edu/publications/kirby05/ch45_kirby.pdf", } @Article{SCI:Kir2005b, author = "R.M. Kirby and G.E. Karniadakis", title = "Selecting the Numerical Flux in Discontinuous Galerkin Methods for Diffusion Problems", journal = "Journal of Scientific Computing", volume = "22/23", pages = "385--411", year = "2005", url = "https://publications.utah.edu/publications/kirby05/Kirby-11.pdf", } @InCollection{SCI:Kni2005a, author = "J.M. Kniss and G. Kindlmann and C.D. Hansen", title = "Multidimentional Transfer Functions for Volume Rendering", booktitle = "The Visualization Handbook", pages = "189--210", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "ncrr, volume rendering, transfer functions", url = "https://publications.utah.edu/publications/jmk05/ch09_kniss.pdf", } @InProceedings{SCI:Kni2005b, author = "J.M. Kniss and R. Van Uitert and A.J. Stephens and G. Li and T. Tasdizen", title = "Statistically Quantitative Volume Visualization", booktitle = "{IEEE} Visualization 2005", year = "2005", keywords = "volume rendering, transfer functions", url = "https://publications.utah.edu/publications/jmk05/vis05_jmk.pdf", } @InCollection{SCI:Kni2005c, author = "J.M. Kniss and A.E. Lefohn and N. Fout", title = "Deferred Filtering: Rendering from Difficult Data Formats", booktitle = "GPU Gems II: Programming Techniques for High-Performance Graphics and General-Purpose Computation", pages = "669--677", year = "2005", editor = "M. Pharr and R. Fernando", chapter = "41", publisher = "Addison Wesley", } @InProceedings{SCI:Kni2005d, author = "J.M. Kniss and A.E. Lefohn and R. Strzodka and S. Sengupta and J.D. Owens", title = "Octree Textures on Graphics Hardware", booktitle = "Proceedings of the ACM SIGGRAPH 2005 Conference on Abstracts and Applications", year = "2005", url = "https://publications.utah.edu/publications/jmk05/OctreeTexturesonGraphicsHardware.pdf", } @Article{SCI:Lai2005a, author = "D.H. Laidlaw and R.M. Kirby and C.D. Jackson and J.S. Davidson and T.S. Miller and M. Silva and W.H. Warren and M. Tarr", title = "Comparing 2D Vector Field Visualization Methods: A User Study", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "11", number = "1", pages = "59--70", year = "2005", url = "https://publications.utah.edu/publications/laidlaw05/Laidlaw_VCG2005.pdf", } @InProceedings{SCI:Lan2005a, author = "D. Laney and S.P. Callahan and N. Max and C.T. Silva and S. Langer and R. Frank", title = "Hardware-Assisted Simulated Radiography", booktitle = c-VIS2005, pages = "44", year = "2005", url = "https://publications.utah.edu/publications/laney05/radiography.pdf", } @InCollection{SCI:Lef2005a, author = "A.E. Lefohn and J.M. Kniss and J. Owens", title = "Implementing Efficient Parallel Data Structures on GPUs", booktitle = "GPU Gems II: Programming Techniques for High-Performance Graphics and General-Purpose Computation", pages = "521--545", year = "2005", editor = "M. Pharr and R. Fernando", chapter = "33", publisher = "Addison Wesley", } @InProceedings{SCI:Lef2005b, author = "A.E. Lefohn and S. Sengupta and J.M. Kniss and R. Strzodka and J.D. Owens", title = "Dynamic Adaptive Shadow Maps on Graphics Hardware", booktitle = "Proceedings of the ACM SIGGRAPH 2005 Conference on Abstracts and Applications", year = "2005", url = "https://publications.utah.edu/publications/lefohn05/DynamicAdaptiveShadowMapsonGraphicsHardware.pdf", } @InProceedings{SCI:Lew2005a, author = "S. Lew and C. Wolters and K. Lee and S. Makeig and G. Worrell and R.S. MacLeod", title = "Epileptogenic Source Localization For Open Skull Head Model of Epilepsy By Independent Component Analysis And Inverse Dipole Fit Method", booktitle = "1st Annual Mountain West Biomedical Engineering Conference", year = "2005", keywords = "source localization, EEG, ICA, dipole fit, ncrr, forward problems inverse problems forward simulation inverse solutions, inverse eeg, eeg, ica", } @InCollection{SCI:Liv2005a, author = "Y. Livnat", title = "Accelerated Isosurface Extraction Approaches", booktitle = "The Visualization Handbook", pages = "39--55", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "scalar field methods, isosurface extraction", url = "https://publications.utah.edu/publications/yarden05/ch02_livnat.pdf", } @InProceedings{SCI:Liv2005b, author = "Y. Livnat and J. Agutter and S. Moon and R.F. Erbacher and S. Foresti", title = "A Visualization Paradigm for Network Intrusion Detection", booktitle = "{IEEE} Workshop on Information Assurance and Security 2005", pages = "30--37", year = "2005", month = "June", keywords = "network security visualization, interfaces, intrusion detection, visalert", url = "https://publications.utah.edu/publications/yarden05/VisAlert.pdf", } @InProceedings{SCI:Liv2005c, author = "Y. Livnat and J. Agutter and S. Moon and S. Foresti", title = "Visual Correlation for Situational Awareness", booktitle = c-IVIS2005, pages = "13", year = "2005", month = "October", keywords = "network security visualization, interfaces, intrusion detection, visalert, visaware,", url = "https://publications.utah.edu/publications/yarden05/VisAware.pdf", } @TechReport{SCI:Liv2005d, author = "Y. Livnat and X. Tricoche", title = "Shadows for Incomplete Point-based Isosurfaces", number = "UUSCI-2005-001", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "isosurface extraction, remote visualization, remote isosurface visualization", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-001.pdf", } @InProceedings{SCI:Lor2005a, author = "P. Lorenzen and B. Davis and S. Joshi", title = "Unbiased Atlas Formation via Large Deformations Metric Mapping", booktitle = "Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv (MICCAI)", volume = "8 (Pt. 2)", pages = "411--418", year = "2005", editor = "J.S. Duncan and G. Gerig", url = "https://publications.utah.edu/publications/lorenzen05/MICCAI05_Lorenzen.pdf", } @Article{SCI:Lu2005a, author = "H. Lu and M. Berzins and C.E. Goodyer and P.K. Jimack", title = "High Order Discontinuous Galerkin Method for EHL Line Contact Problems", journal = "Communication in Numerical Methods in Engineering", volume = "21", number = "11", pages = "643--650", year = "2005", keywords = "computational mechanics, EHL", url = "https://publications.utah.edu/publications/lu05/LBGJ05.pdf", } @Article{SCI:Luj2005a, author = "T.J. Lujan and S.P. Lake and T.A. Plaizier and B.J. Ellis and J.A. Weiss", title = "Simultaneous Measurement of Three-Dimensional Joint Kinematics and Tissue Strains with Optical Methods", journal = "ASME Journal of Biomechanical Engineering", volume = "127", pages = "193--197", year = "2005", keywords = "computational biomechanics, computational mechanics", url = "https://publications.utah.edu/publications/lujan05/lujan_jbme_2005.pdf", } @Article{SCI:Mac2005a, author = "R.S. MacLeod and B. Yilmaz and B.B. Punske and B. Taccardi and D.H. Brooks", title = "Epicardial Activation Mapping from Multielectrode Venous Catheters", journal = j-JE, pages = "(in press)", year = "2005", keywords = "cardiac heart, ncrr", } @Article{SCI:Mac2005b, author = "R.S. MacLeod and S. Shome and J.G. Stinstra and B.P. Punske and B. Hopenfeld", title = "Mechanisms of Ischemia-Induced ST-Segment Changes", journal = j-JE, volume = "38(4 Suppl)", pages = "8--13", year = "2005", month = "November", keywords = "ncrr", } @Article{SCI:Mac2005c, author = "R.S. MacLeod", title = "Mechanisms of ischemia-induced {ST}-segment changes", journal = "Journal of Electrocardiology", volume = "38", number = "4 ", pages = "8--13", year = "2005", publisher = "Elsevier", month = "Oct", keywords = "cardiac heart, ncrr", } @Article{SCI:Mac2005e, author = "R.S. MacLeod and F. Kornreich and A. van Oosterom and P. Rautaharju and R. Selvester and G. Wagner and C. Zywietz", title = "Report of the First Virtual Visualization of the Reconstructed Electrocardiographic Display Symposium", journal = "Journal of Electrocardiology", volume = "38", pages = "385--399", year = "2005", url = "https://publications.utah.edu/publications/macleod05/FredSymposium-final.pdf", } @TechReport{SCI:Mey2005a, author = "M.D. Meyer and H. Pfister and C.D. Hansen and C.R. Johnson", title = "Image-Based Volume Rendering with Opacity Light Fields", number = "UUSCI-2005-002", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scalar field methods, volume rendering, image based volume rendering ibvr", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-002.pdf", } @InProceedings{SCI:Mey2005b, author = "M.D. Meyer and P. Georgel and R.T. Whitaker", title = "Robust Particle Systems for Curvature Dependent Sampling of Implicit Surfaces", booktitle = "In Proceedings of the International Conference on Shape Modeling and Applications (SMI)", pages = "124--133", year = "2005", month = "June", keywords = "volume rendering", url = "https://publications.utah.edu/publications/miriah05/smi05meyer.pdf", } @InProceedings{SCI:Moo2005a, author = "S.M. Moore and R.E. Debski and B. Ellis and P.J. McMahon and J.A. Weiss", title = "All Three Regions of the Inferior Glenohumeral Ligament Contribute to Anterior Stability", booktitle = "Proceedings, 51st Annual Orthopaedic Research Society Meeting", volume = "30", pages = "804", year = "2005", keywords = "computational biomechanics, mrl", url = "https://publications.utah.edu/publications/moore05/moore_ORS_05.pdf", } @InProceedings{SCI:Nat2005a, author = "V. Natarajan and V. Pascucci", title = "Volumetric Data Analysis Using Morse-Smale Complexes", booktitle = "Proceedings of the International Conference Shape Modeling and Applications", pages = "320--325", year = "2005", editor = "A.G. Belyaev and A.A. Pasko and M. Spagnuolo", organization = "IEEE Computer Society", month = "June", } @InProceedings{SCI:Pal2005a, author = "R. Palmer and S. Barrus and Y. Yang and G. Gopalakrishnan and R.M. Kirby", title = "Gauss: A Framework for Verifying Scientific Computing Software", booktitle = "Proceeding of the Software Model Checking Workshop", year = "2005", month = "July", location = "Edinburgh, Scotland", } @Article{SCI:Piz2005a, author = "S.M. Pizer and P.T. Fletcher and S. Joshi and A.G. Gash and J. Stough and A. Thall and G. Tracton and E. Chaney", title = "A Method and Software for Segmentation of Anatomic Object Ensembles by Deformable M-Reps", journal = "Med Phys", volume = "32", number = "5", pages = "1335--1345", year = "2005", month = "May", url = "https://publications.utah.edu/publications/pizer05/MEDPHYS05_Pizer_defmrep.pdf", } @InProceedings{SCI:Piz2005b, author = "S.M. Pizer and J.Y. Jeong and C. Lu and K. Muller and S. Joshi", title = "Estimating the Statistics of Multi-Object Anatomic Geometry Using Inter-Object Relationships", booktitle = "Proceedings of International Workshop on Deep Structure, Singularities and Computer Vision ({DSSCV})", pages = "60--71", year = "2005", editor = "O.F. Olsen and L. Florack and A Kuijper", month = "June", url = "https://publications.utah.edu/publications/pizer05/DSSCV05_Pizer_Jeong.pdf", } @InProceedings{SCI:Ram2005a, author = "M. Ramanath and L. Zhang and J. Freire and J. Haritsa", title = "IMAX: Incremental Maintenance of Schema-Based XML Statistics", booktitle = "International Conference on Data Engineering (ICDE)", pages = "273--284", year = "2005", publisher = "IEEE Computer Society", address = "Los Alamitos, CA, USA", issn = "1084-4627", url = "https://publications.utah.edu/publications/ramanath05/imax-icde2005.pdf", } @Unpublished{SCI:Ree2005a, author = "D. Reed and R. Bajcsy and J.M. Griffiths and J. Dongarra and C.R. Johnson", title = "Computational Science: Ensuring America's Competitiveness", year = "2005", month = "June", note = "President's Information Technology Advisory Committee (PITAC)", url = "https://publications.utah.edu/publications/Ree2005a/PresidentReport_CS2005.pdf", } @InProceedings{SCI:Sac2005a, author = "F. Sachse and M. Cole and R.M. Kirby and X. Tricoche and C.R. Johnson", title = "Advanced Modeling and Visualization of Cardiothoracic Electrical Fields", booktitle = "Proceedings of 13th Medicine Meets Virtual Reality (MMVR13)", year = "2005", url = "https://publications.utah.edu/publications/sachse05/Sachse_Mod_Card_Elec_Fields2005.pdf", } @InProceedings{SCI:Sam2005a, author = "A.A. Samsonov and E.V.R. DiBella and P. Kellman and E.G. Kholmovski and C.R. Johnson", title = "Adaptive k-t {BLAST}/k-t {SENSE} for Accelerating Cardiac Perfusion {MRI}", booktitle = c-SCMR2005, pages = "277--278", year = "2005", keywords = "cardiac heart, ncrr, cardiac perfusion mri, reduced acquisition, adaptive filtering, k-t blast, k-t sense, tsense, bisti", url = "https://publications.utah.edu/publications/samsonov05/scmr05.pdf", } @InProceedings{SCI:Sam2005b, author = "A.A. Samsonov and E.G. Kh{\"o}lmovski and C.R. Johnson", title = "{POCS}-Enhanced Parallel {MRI} Correction of {MR} Image Artifacts", booktitle = "Proc. Intl. Soc. Mag. Reson.", pages = "690", year = "2005", note = "Abstract", url = "https://publications.utah.edu/publications/samsonov05/Samsonov_ISMR2005.pdf", } @InCollection{SCI:Sch2005a, author = "G. Scheuermann and X. Tricoche", title = "Topological Methods for Flow Visualization", booktitle = "The Visualization Handbook", pages = "341--356", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "ncrr, vector field methods, aerodynamics", url = "https://publications.utah.edu/publications/scheuermann05/ch17_scheuermann.pdf", } @InProceedings{SCI:Sch2005b, author = "C. Scheidegger and S. Fleishman and C.T. Silva.", title = "Triangulating Point-Set Surfaces With Bounded Error", booktitle = "Proceedings of the Third Eurographics/ACM Symposium on Geometry Processing", pages = "63--72", year = "2005", publisher = "Eurographics Association", isbn = "3-905673-24-X", url = "https://publications.utah.edu/publications/cscheid05/tpss.pdf", } @Article{SCI:Sch2005c, author = "C. Scheidegger and J. Comba and R. Cunha.", title = "Practical CFD Simulations on the GPU Using SMAC", journal = "Computer Graphics Forum", volume = "24", number = "4", pages = "715--728", year = "2005", keywords = "cfd computational fluid dynamics", url = "https://publications.utah.edu/publications/cscheid05/smac-cgf.pdf", } @Article{SCI:Ser2005a, author = "Y. Serinagaoglu and D.H. Brooks and R.S. MacLeod", title = "Bayesian Solutions and Performance Analysis in Bioelectric Inverse Problems", journal = j-BME, volume = "52", number = "6", pages = "1009--1020", year = "2005", month = "June", keywords = "ncrr, cibc", url = "https://publications.utah.edu/publications/serinagaoglu05/Serinagaoglu_TBE2005.pdf", } @Article{SCI:Shi2005a, author = "Y.T. Shiu and J.A. Weiss and J.B. Hoying and M.N. Iwamoto and I.S. Joung and C.T. Quam", title = "The Role of Mechanical Stresses in Angiogenesis", journal = j-CRBME, volume = "33", number = "5", pages = "431--510", year = "2005", keywords = "angiogenesis, computational biomechanics, computational mechanics", url = "https://publications.utah.edu/publications/shiu05/shiu_crbe_2005.pdf", } @Article{SCI:Sil2005a, author = "C.T. Silva and J.L.D. Comba and S.P. Callahan and F.F. Bernardon", title = "A Survey of GPU-Based Volume Rendering of Unstructured Grids", journal = "Revista de Informatica Teorica e Aplicada", volume = "12", number = "2", pages = "9--29", year = "2005", issn = "01034308", keywords = "volume rendering", url = "https://publications.utah.edu/publications/csilva2005/gputet_survey.pdf", } @Article{SCI:Sir2005a, author = "S. Sirisup and G.E. Karniadakis and D. Xiu and I.G. Kevrekidis", title = "Equation-free/Galerkin-free POD-assisted Computation of Incompressible Flows", journal = "Journal of Computational Physics", volume = "207", number = "2", pages = "568--587", year = "2005", url = "https://publications.utah.edu/publications/sirisup05/Sirisup_JCP2005.pdf", } @InProceedings{SCI:Sti2005a, author = "J.G. Stinstra and D.M. Weinstein and B. Hopenfeld and C.S. Henriquez and R.S. MacLeod", title = "Software Challenges in the New Field of Integrated Cardiac Models", booktitle = c-BEMNFSI2005, volume = "7", pages = "195--198", year = "2005", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/Sti2005a/stinstra-2005b.pdf", } @Article{SCI:Sti2005b, author = "J.G. Stinstra and B. Hopenfeld and R.S. MacLeod", title = "On the Passive Cardiac Conductivity", journal = j-ABE, volume = "33", number = "12", pages = "1743--1751", year = "2005", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/stinstra05/Stinstra_ABE2005.pdf", } @Article{SCI:Sti2005c, author = "J.G. Stinstra and S. Shome and B. Hopenfeld and R.S. MacLeod", title = "Modelling Passive Cardiac Conductivity During Ischaemia", journal = "Med. Biol. Eng. Comput.", volume = "43", number = "6", pages = "776--782", year = "2005", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/stinstra05/stinstra-mbec05.pdf", } @InProceedings{SCI:Sun2005a, author = "Q. Sun and R.T. Burks and P.E. Greis and N.S. Phatak and J.A. Weiss", title = "Noninvasive Measurement of Meniscus Strain Using Hyperelastic Warping", booktitle = "51st Annual Orthopaedic Research Society Meeting", volume = "30", pages = "478", year = "2005", url = "https://publications.utah.edu/publications/sun05/sun_ORS_05.pdf", } @InProceedings{SCI:Suz2005a, author = "T. Suzuki and S. Takahashi and J. Shepherd", title = "An Interior Surface Generation Method for All-Hexahedral Meshing", booktitle = "Proceedings of The 14th International Meshing Roundtable", pages = "377--398", year = "2005", publisher = "Springer-Verlag", month = "September", keywords = "adaptive mesh generation", url = "https://publications.utah.edu/publications/suzuki05/suzuki.pdf", } @Article{SCI:Tac2005a, author = "B. Taccardi and B.B. Punske and F. Sachse and X. Tricoche and P. Colli-Franzone and L.F. Pavarino and C. Zabawa", title = "Intramural Activation and Repolarization Sequences in Canine Ventricles. Experimental and Simulation Studies", journal = j-JE, volume = "38", number = "4", pages = "131-137", year = "2005", keywords = "cardiac heart, ncrr, simulation math modeling", } @InProceedings{SCI:Tas2005a, author = "T. Tasdizen and S.P. Awate and R.T. Whitaker and N. Foster", title = "{MRI} Tissue Classification with Neighborhood Statistics: A Nonparametric, Entropy-Minimizing Approach", booktitle = c-MICCAI2005, pages = "517--525", year = "2005", keywords = "ip image processing signal processing, ncrr", url = "https://publications.utah.edu/publications/tolga05/tasdizen_miccai2005.pdf", } @InProceedings{SCI:Tas2005b, author = "T. Tasdizen and R.T. Whitaker and R. Marc and B. Jones", title = "Enhancement of Cell Boundaries in Transmission Micropscopy Images", booktitle = c-ICIP, volume = "2", pages = "129--132", year = "2005", keywords = "ip image processing signal processing, crcns", url = "https://publications.utah.edu/publications/tolga05/Tasdizen_ICIP05.pdf", } @TechReport{SCI:Tas2005c, author = "T. Tasdizen and R.T. Whitaker and R. Marc and B. Jones", title = "Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images", number = "UUSCI-2005-008", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing, crcns", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-008.pdf", } @TechReport{SCI:Tas2005d, author = "T. Tasdizen and R.T. Whitaker and R. Marc and B. Jones", title = "Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images", number = "UUSCI-2005-007", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-007.pdf", } @Article{SCI:Ter2005a, author = "T. Terriberry and S. Joshi and G. Gerig", title = "Hypothesis Testing with Nonlinear Shape Models", journal = "Information Processing in Medical Imaging (IPMI)", pages = "15--26", year = "2005", editor = "G Christensen and M Sonka", month = "July", url = "https://publications.utah.edu/publications/terriberry05/IPMI05_Terriberry.pdf", } @Article{SCI:Tri2005a, author = "X. Tricoche and C. Garth and G. Scheuermann", title = "Fast and Robust Extraction of Separation Line Features", journal = "Scientific Visualization: The Visual Extraction of Knowledge from Data", pages = "249--264", year = "2005", editor = "G.-P. Bonneau and T. Ertl and G.M. Nielson", publisher = "Springer", url = "https://publications.utah.edu/publications/tricoche05/separation.pdf", } @InProceedings{SCI:Ues2005a, author = "D. Uesu and L. Bavoil and S. Fleishman and J. Shepherd and C.T. Silva", title = "Simplication of Unstructured Tetrahedral Meshes by Point Sampling", booktitle = "Proceedings of the 2005 International Workshop on Volume Graphics", pages = "157--238", year = "2005", url = "https://publications.utah.edu/publications/uesu05/vg05.pdf", } @Article{SCI:Ver2005a, author = "A.I. Veress and G.T. Gullberg and J.A. Weiss", title = "Measurement of Strain in the Left Ventricle with Cine-{MRI} and Deformable Image Registration", journal = j-JBE, volume = "127", number = "7", pages = "1195--1207", year = "2005", month = "July 21", keywords = "computational biomechanics, warping, deformable image registration", url = "https://publications.utah.edu/publications/veress05/veress_JBME_2005.pdf", } @TechReport{SCI:Wal2005a, author = "I. Wald and C. Benthin and A. Efremov and T. Dahmen and J. Gunther and A. Dietrich and V. Havran and H. Seidel and P. Slusallek", title = "A Ray Tracing based Virtual Reality Framework for Industrial Design", number = "UUSCI-2005-009", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing, vr virtual reality haptics", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-009.pdf", } @TechReport{SCI:Wal2005b, author = "I. Wald", title = "DIRmaps : Discretized Incident Radiance Maps for High-Quality Global Illumination Walkthroughs in Complex Environments", number = "UUSCI-2005-010", year = "2005", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "rtrt real-time ray tracing, vr virtual reality haptics", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2005-010.pdf", } @InCollection{SCI:Wei2005a, author = "D.M. Weinstein and S.G. Parker and J. Simpson and K. Zimmerman and G.M. Jones", title = "Visualization in the SCIRun Problem-Solving Environment", booktitle = "The Visualization Handbook", pages = "615--632", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "scirun, ncrr", url = "https://publications.utah.edu/publications/dmw05/chapter-rev4.pdf", } @Article{SCI:Wei2005b, author = "J.A. Weiss and B.J. Maakestad", title = "Permeability of Human Medial Collateral Ligament in Compression Transverse to the Collagen Fiber Direction", journal = "Journal of Biomechanics", volume = "39", number = "2", pages = "276--283", year = "2005", url = "https://publications.utah.edu/publications/weiss05/weiss_j_biomech_2005.pdf", } @Article{SCI:Wei2005c, author = "J.A. Weiss and J.C. Gardiner and B.J. Ellis and T.J. Lujan and N.S. Phatak", title = "Three-Dimensional Finite Element Modeling of Ligaments: Technical Aspects", journal = "Medical Engineering and Physics", volume = "27", number = "10", pages = "845--861", year = "2005", month = "May 21", note = "Invited paper for special issue: Advances in the Finite Element Modeling of Soft Tissue Deformation", keywords = "computational biomechanics", url = "https://publications.utah.edu/publications/weiss05/weiss_med_eng_phys_2005.pdf", } @InCollection{SCI:Whi2005a, author = "R.T. Whitaker", title = "Isosurfaces and Level-Sets", booktitle = "The Visualization Handbook", pages = "97--123", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "ncrr, isosurface extraction", url = "https://publications.utah.edu/publications/whitaker05/ch06_whitaker.pdf", } @Article{SCI:Wol2005b, author = "C. H. Wolters and A. Anwander and X. Tricoche and S. Lew and C.R. Johnson", title = "Influence of Local and Remote White Matter Conductivity Anisotropy for a Thalamic Source on {EEG}/{MEG} Field and Return Current Computation", journal = "Int.Journal of Bioelectromagnetism", volume = "7", number = "1", pages = "203--206", year = "2005", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, forward simulation, ncrr, anisotropy, thalamus", url = "https://publications.utah.edu/publications/wolters05/wolters_et_al_IJBEM2005.pdf", } @Article{SCI:Xiu2005a, author = "D. Xiu and S.J. Sherwin and S. Dong and G.E. Karniadakis", title = "Strong and Auxiliary Forms of the Semi-Lagrangian Method for Incompressible Flows", journal = "Journal of Scientific Computing", volume = "25", number = "1-2", pages = "323-346", year = "2005", keywords = "Semi-Lagrangian method, spectral element method, incompressible flow", url = "https://publications.utah.edu/publications/xiu05/Xiu_JSC2005.pdf", } @Article{SCI:Xiu2005b, author = "D. Xiu and I.G. Kevrekidis", title = "Equation-free, Multiscale Computation for Unsteady Random Diffusion", journal = "SIAM Journal on Multiscale Modeling and Simulation", volume = "4", number = "3", pages = "915--935", year = "2005", keywords = "multiscale problem, diffusion in random media, stochastic modeling, equation-free", url = "https://publications.utah.edu/publications/xiu05/Xiu_SIAM_JMMS2005.pdf", } @Article{SCI:Xiu2005c, author = "D. Xiu and J.S. Hesthaven", title = "High Order Collocation Methods for Differential Equations with Random Inputs", journal = "SIAM Journal on Scientific Computing", volume = "27", number = "3", pages = "1118--1139", year = "2005", keywords = "collocation methods, stochastic inputs, differential equations, uncertainty quantification", url = "https://publications.utah.edu/publications/xiu05/Xiu_SIAM_JSC2005.pdf", } @Article{SCI:Xiu2005d, author = "D. Xiu and R. Ghanem and I.G. Kevrekidis", title = "An Equation-free, Multiscale Approach to Uncertainty Quantification", journal = "IEEE Computing in Science and Engineering Journal (CiSE)", volume = "7", number = "3", pages = "16--23", year = "2005", keywords = "Analytical models, Computational modeling, Context modeling, Microscopy, Nonlinear equations, Partial differential equations, Performance analysis, Sampling methods, Stochastic processes, Uncertainty", url = "https://publications.utah.edu/publications/xiu05/Xiu_CiSE2005.pdf", } @Article{SCI:Yil2005a, author = "B. Yilmaz and R.S. MacLeod and B.B. Punske and B. Taccardi and D.H. Brooks", title = "Training Set Selection for Statistical Estimation of Epicardial Activation Mapping from Intravenous Multielectrode Catheters", journal = j-BME, pages = "(in press)", year = "2005", keywords = "ncrr", } @Article{SCI:Yil2005b, author = "B. Yilmaz and R.S. MacLeod and B.B. Punske and B. Taccardi and D.H. Brooks", title = "Venous Catheter Based Mapping of Ectopic Epicardial Activation: Training Data Set Selection for Statistical Estimation", journal = "IEEE Trans Biomed Eng", volume = "52", number = "11", pages = "1823--1831", year = "2005", month = "November", keywords = "ncrr, cibc", url = "https://publications.utah.edu/publications/yilmaz05/Yilmaz_TBE2005.pdf", } @Article{SCI:Yoo2005a, author = "S.-E. Yoon and P. Lindstrom and V. Pascucci and D. Manocha", title = "Cache-Oblivious Mesh Layouts", journal = "ACM Transactions on Graphics: ACM SIGGRAPH 2005 Papers", volume = "24", number = "3", pages = "886--893", year = "2005", month = "August", url = "https://publications.utah.edu/publications/yoon05/p886-yoon.pdf", } @InProceedings{SCI:Yoo2005b, author = "S.-E. Yoon and P. Lindstrom and V. Pascucci and D. Manocha", title = "Cache-Oblivious Layouts of Polygonal Meshes", booktitle = "Proceedings of Massive 2005 (workshop on Massive Geometric Data Sets)", pages = "29--33", year = "2005", } @Article{SCI:Yos2005a, author = "Z. Yosibash and R.M. Kirby", title = "Dynamic Response of Various Von-Karman Non-Linear Plate Models and their 3-D Counterparts", journal = "International Journal of Solids and Structures", volume = "42", pages = "2517--2531", year = "2005", url = "https://publications.utah.edu/publications/yosibash05/Yosibash_J-SolidsStruc05.pdf", } @InCollection{SCI:Zha2005a, author = "S. Zhang and D.H. Laidlaw and G. Kindlmann", title = "Diffusion Tensor {MRI} Visualization", booktitle = "The Visualization Handbook", pages = "327--340", year = "2005", editor = "C.D. Hansen and C.R. Johnson", publisher = "Elsevier", isbn = "0-12-387582-X", keywords = "ncrr, tensor field methods, diffusion tensor imaging", url = "https://publications.utah.edu/publications/zhang05/ch16_zhang.pdf", } @Article{SCI:Alt2004a, author = "O. Alter and G.H. Golub", title = "Integrative Analysis of Genome-Scale Data by Using Pseudoinverse Projection Predicts Novel Correlation Between DNA Replication and RNA Transcription", title_url = "http://www.alterlab.org/pseudoinverse/", journal = "Proceedings of the National Academy of Sciences", volume = "101", number = "47", pages = "16577--16582", year = "2004", publisher = "Proceedings of the National Academy of Sciences", month = "November", url = "https://publications.utah.edu/publications/Alt2004a/Alter_PNAS2004.pdf", } @InProceedings{SCI:Alt2004b, author = "O. Alter and G.H. Golub and P.O. Brown and D. Botstein", title = "Novel Genome-Scale Correlation Between DNA Replication and {RNA} Transcription During the Cell Cycle in Yeast is Predicted by Data-Driven Models", booktitle = "Proceedings of the Miami Nature Biotechnology Winter Symposium on the Cell Cycle, Chromosomes and Cancer", volume = "15", year = "2004", editor = "M.P. Deutscher and S. Black and P.E. Boehmer and G. D'Urso and T. Fletcher and F. Huijing and A. Marshall and B. Pulverer and B. Renault and J.D. Rosenblatt and J.M. Slingerland and W.J. Whelan", url = "https://publications.utah.edu/publications/alter04/Alter_MNBWS2004.pdf", } @InProceedings{SCI:Ame2004a, author = "S. Amer-Yahia and F. Du and J. Freire", title = "A Comprehensive Solution to the XML-to-Relational Mapping Problem", booktitle = "Proceedings of the 6th Annual ACM International Workshop on Web Information and Data Management", pages = "31--38", year = "2004", location = "Washington DC, USA", isbn = "1-58113-978-0", url = "https://publications.utah.edu/publications/amer-yahia04/Amer-yahia_WIDM2004.pdf", } @InProceedings{SCI:And2004a, author = "A.E. Anderson and C.L. Peters and B.D. Tuttle and J.A. Weiss", title = "Development and Validation of a Subject-Specific Finite Element Model of the Pelvis: Assessment of Model Sensitivity", booktitle = c-CMBBE2004, pages = "(6 pages)", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, ip image processing signal processing, segmentation, surface processing", url = "https://publications.utah.edu/publications/anderson04/25B.pdf", } @InProceedings{SCI:And2004b, author = "A.E. Anderson and C.L. Peters and B.D. Tuttle and J.A. Weiss", title = "A Subject-Specific Finite Element Model of the Pelvis Accurately Predicts Cortical Strains Under Acetabular Loading", booktitle = c-ORS2004, volume = "29", pages = "1334", year = "2004", month = "March", location = "San Francisco, {CA}", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, segmentation, surface processing", } @Article{SCI:Bar2004a, author = "D. Barbosa and J. Freire and A. Mendelzon", title = "Information Preservation in XML-to-Relational Mappings", journal = "Database and XML Technologies", volume = "3186/2004", pages = "66--81", year = "2004", series = "Lecture Notes in Computer Science (LNCS)", isbn = "978-3-540-22969-8", url = "https://publications.utah.edu/publications/barbosa04/Barbosa_LNCS2004.pdf", } @TechReport{SCI:Ber2004a, author = "F.F. Bernardon and C.A. Pagot and J.L.D. Comba and C.T. Silva", title = "{GPU}-based Tiled Ray Casting using Depth Peeling", number = "UUSCI-2004-006", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-006.pdf", } @Article{SCI:Ber2004b, author = "M. Berzins", title = "Variable Order Finite Elements and Positivity Preservation for Hyperbolic PDEs", journal = "Applied Numerical Mathematics", volume = "48", number = "3-4", pages = "253--439", year = "2004", month = "March", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational pde pdes computational partial differential equations", url = "https://publications.utah.edu/publications/berzins04/HPhyp.pdf", } @InProceedings{SCI:Bor2004a, author = "R. Borgo and V. Pascucci and R. Scopigno", title = "Massive Data Pre-Processing with a Cluster Based Approach", booktitle = "Proceedings of the 2004 Eurographics Symposium on Parallel Graphics and Visualization ({EG}-{PGV}-04)", pages = "67--74", year = "2004", publisher = "Eurographics Association", address = "Aire-la-Ville, Switzerland", month = "June", note = "UCRL-PROC-208678", } @Article{SCI:Bre2004a, author = "P.-T. Bremer and H. Edelsbrunner and B. Hamann and V. Pascucci", title = "A Topological Hierarchy for Functions on Triangulated Surfaces", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "10", number = "4", pages = "385-396", year = "2004", month = "July/August", note = "UCRL-JRNL-208700", } @InProceedings{SCI:Bre2004c, author = "P.-T. Bremer and V. Pascucci and B. Hamann", title = "Maximizing adaptivity in hierarchical topological models", booktitle = "Trends in Software", pages = "121--130", year = "2004", editor = "T. Moeller and B. Hamann and B. Russell", publisher = "Springer", month = "January", note = "UCRL-BOOK-200013", } @InProceedings{SCI:Bro2004b, author = "D.H. Brooks and A. Ghodrati and Y. Zhang and G. Tadmor and R.S. MacLeod", title = "Inverse Electrocardiography in the Framework of Dynamic Imaging Problems", booktitle = c-EMBS2004, pages = "3565--3568", year = "2004", month = "September", location = "San Francisco, CA", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions, cardiac heart", url = "https://publications.utah.edu/publications/brooks04/EMBS04_DanaBrooks.pdf", } @Article{SCI:Bul2004a, author = "E. Bullitt and M.G. Ewend and S. Aylward and W. Lin and G. Gerig and S. Joshi and I. Jung and K. Muller and J. Smith", title = "Abnormal Vessel Tortuosity as a Marker of Treatment Response of Malignant Gliomas: Preliminary Report", journal = "Technol Cancer Res Treat", volume = "3", number = "6", pages = "577--584", year = "2004", month = "December", url = "https://publications.utah.edu/publications/bullitt04/B_TCRT_3_6_577.pdf", } @TechReport{SCI:Cal2004a, author = "S.P. Callahan and M. Ikits and J.L.D. Comba and C.T. Silva", title = "Hardware-Assisted Visibility Sorting for Unstructured Volume Rendering", number = "UUSCI-2004-003", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "June", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-003.pdf", } @TechReport{SCI:Cat2004a, author = "J. Cates and A. Lefohn and R.T. Whitaker", title = "GIST: an Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images", number = "UUCS-04-007", year = "2004", institution = "University of Utah School of Computing", keywords = "ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/cates04/Cates_MedIA2004Tech.pdf", } @TechReport{SCI:Cat2004b, author = "J. Cates and R.T. Whitaker and G.M. Jones", title = "Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation", number = "UUCS-04-006", year = "2004", institution = "University of Utah School of Computing", keywords = "ip image processing signal processing, segmentation, watershed, ncrr", url = "https://publications.utah.edu/publications/cates04/UUCS-04-006.pdf", } @Article{SCI:Cat2004c, author = "J. Cates and A. Lefohn and R.T. Whitaker", title = "GIST: An Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images", journal = "Medical Image Analysis", volume = "8", number = "3", pages = "217--231", year = "2004", month = "September", keywords = "ip image processing signal processing, segmentation, ncrr", } @InProceedings{SCI:Cha2004a, author = "E. Chaney and S. Pizer and S. Joshi and R. Broadhurst and P.T. Fletcher and G. Gash and Q. Han and J.Y. Jeong and C. Lu and D. Merck and J. Stough and G. Tracton and M.D.J. Bechtel and J. Rosenman and Y.Y. Chi and K. Muller", title = "Automatic Male Pelvis Segmentation from CT Images via Statistically Trained Multi-Object Deformable M-rep Models", booktitle = "Presented at American Society for Therapeutic Radiology and Oncology (ASTRO)", year = "2004", url = "https://publications.utah.edu/publications/chaney04/ASTRO04_Chaney.pdf", } @Article{SCI:Che2004a, author = "A.B. Cheryauka and J.N. Lee and A.A. Samsonov and M. Defrise and G.T. Gullberg", title = "{MRI} Diffusion Tensor Reconstruction with {PROPELLER} Data Acquisition", journal = j-JMRI, volume = "22", number = "2", pages = "139--148", year = "2004", keywords = "tensor field methods, diffusion tensor imaging, ip image processing signal processing, bisti, PROPELLER, Imaging, propeller, imaging, ncrr", url = "https://publications.utah.edu/publications/cheryauka04/propeller.pdf", } @InProceedings{SCI:Col2004a, author = "M. Cole and F.B. Sachse and D.M. Weinstein and S.G. Parker and R.M. Kirby", title = "A Software Framework for Solving Problems of Bioelectricity Applying High-Order Finite Elements", booktitle = c-EMBS2004, volume = "1", pages = "821--824", year = "2004", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions, finite elements, biopse", url = "https://publications.utah.edu/publications/mjc04/Article3.pdf", } @InProceedings{SCI:Col2004b, author = "K. Cole-McLaughlin and V. Pascucci", title = "Multiresolution Representation of Topology", booktitle = "Proceedings of the 4th {IASTED} International Conference on Visualization, Imaging, And Image Processing (VIIP 2004)", volume = "2004", pages = "282--289", year = "2004", month = "September", location = "Marbella, Spain", note = "UCRL-PROC-208680", } @TechReport{SCI:Com2004a, author = "J.L.D. Comba and J.S.B. Mitchell and C.T. Silva", title = "On the Convexification of Unstructured Grids From A Scientific Visualization Perspective", number = "UUSCI-2004-004", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "unstructured grids, convexification, Delaunay triangulations, binary space, partitioning trees, delaunay triangulations", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-004.pdf", } @Article{SCI:Cse2004a, author = "J.G. Csernansky and L. Wang and S.C. Joshi and J.T. Ratnanather and M. Miller", title = "Computational Anatomy and Neuropsychiatric Disease: Probabilistic Assessment of Variation and Statistical Inference of Group Difference, Hemispheric Asymmetry, and Time-Dependent Change", journal = "Neuroimage", volume = "23 Suppl. 1", pages = "S56--S68", year = "2004", } @InProceedings{SCI:Dam2004a, author = "Kostadin Damevski and Steven Parker", title = "Imprecise Exceptions in Distributed Parallel Components", booktitle = c-EUP2004, volume = "3149", pages = "108--116", year = "2004", series = "{Lecture Notes in Computer Science}", month = "August/September", keywords = "CCA, CCTTSS, Univerisity of Utah, , cca, ccttss, univerisity of utah", } @InProceedings{SCI:Dam2004b, author = "E. Dam and P.T. Fletcher and S.M. Pizer and G. Tracton and J. Rosenman", title = "Prostate Shape Modeling based on Principal Geodesic Analysis Bootstrapping", booktitle = "Medical Image Computing and Computer-Assisted Intervention (MICCAI)", pages = "1008--1016", year = "2004", url = "https://publications.utah.edu/publications/dam04/MICCAI04_Dam_prostate.pdf", } @InProceedings{SCI:Das2004a, author = "R. Das and L. Krishnan and C. Evensen and J.A. Weiss", title = "{MCL} Healing at Early Time Points: Biomechanics and Gene Expression", booktitle = c-ORS2004, volume = "29", pages = "892", year = "2004", month = "March", location = "San Francisco, CA", } @InProceedings{SCI:Dav2004a, author = "B. Davis and D. Prigent and J. Bechtel and J. Rosenman and D.M. Lovelock and S. Joshi", title = "Accommodating Bowel Gas in Large Deformation Image Registration for Adaptive Radiation Therapy of the Prostate", booktitle = "Proceedings of AAPM Annual Meeting", year = "2004", month = "July", url = "https://publications.utah.edu/publications/davis04/AAPM04-Davis.pdf", } @InProceedings{SCI:Dav2004b, author = "B. Davis and P. Lorenzen and S. Joshi", title = "Large Deformation Minimum Mean Squared Error Template Estimation for Computational Anatomy", booktitle = "Proceedings of the International Symposium on Biomedical Imaging (ISBI)", pages = "173--176", year = "2004", month = "April", location = "Piscataway, NJ", url = "https://publications.utah.edu/publications/davis04/ISBI04-Davis-def.pdf", } @InProceedings{SCI:Dem2004a, author = "D.E. DeMarle and C.P. Gribble and S.G. Parker", title = "Memory-Savvy Distributed Interactive Ray Tracing", booktitle = c-EGPGV2004, year = "2004", editor = "Dirk Bartz and Bruno Raffin and Han-Wei Shen", keywords = "rtrt real-time ray tracing, parallel visualization, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/demarle04/epgv_2004.pdf", } @InProceedings{SCI:Det2004a, author = "C. DeTar and A.L. Fogelson and C.R. Johnson and C.A. Sikorski and T. Truong", title = "Computational Engineering and Science Program at the University of Utah", booktitle = c-ICCS2004, pages = "1202--1209", year = "2004", editor = "M. Bubak et al", series = "Lecture Notes in Computer Science (LNCS) 3039, part 4", keywords = "computational engineering, ces program, computational science, forward problems inverse problems forward simulation inverse solutions, finite elements, cfd computational fluid dynamics, computational mechanics, computational pde pdes computational partial differential equations, evaporation", url = "https://publications.utah.edu/publications/detar04/ces-iccs04-crj.pdf", } @InProceedings{SCI:Du2004a, author = "F. Du and S. Amer-Yahia and J. Freire", title = "ShreX: Managing XML Documents in Relational Databases", booktitle = "Proceedings of the 13th International Conference on Very Large Data Bases", volume = "30", pages = "1297--1300", year = "2004", isbn = "0-12-088469-0", url = "https://publications.utah.edu/publications/du04/Du_VLDB2004.pdf", } @InProceedings{SCI:Ede2004a, author = "H. Edelsbrunner and J. Harer and V. Natarajan and V. Pascucci", title = "Local and Global Comparison of Continuous Functions", booktitle = "Proceedings of the {IEEE} Conference on Visualization ({VIS}-04)", pages = "275--280", year = "2004", month = "October", note = "UCRL-PROC-208677", } @InProceedings{SCI:Ede2004b, author = "H. Edelsbrunner and J. Harer and A. Mascarenhas and V. Pascucci", title = "Time-Varying Reeb Graphs for Continuous Space-Time Data", booktitle = "SCG '04: Proceedings of the Twentieth Annual Symposium on Computational Geometry", pages = "366--372", year = "2004", publisher = "ACM Press", location = "Brooklyn, New York, USA", note = "UCRL-PROC-208697", isbn = "1-58113-885-7", } @Article{SCI:Fle2004a, author = "P.T. Fletcher and C. Lu and S.M. Pizer and S. Joshi", title = "Principal Geodesic Analysis for the Study of Nonlinear Statistics of Shape", journal = "IEEE Trans Med Imaging", volume = "23", number = "8", pages = "995--1005", year = "2004", month = "August", url = "https://publications.utah.edu/publications/fletcher04/TMI04_Fletcher_PGA.pdf", } @Article{SCI:Fle2004b, author = "P.T. Fletcher and S. Joshi", title = "Principal Geodesic Analysis on Symmetric Spaces: Statistics of Diffusion Tensors", journal = "Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis", volume = "3117", pages = "87--98", year = "2004", series = "Springer-Verlag, Lecture Notes In Computer Science", url = "https://publications.utah.edu/publications/fletcher04/CVAMIA04_Fletcher_DTStats.pdf", } @PhdThesis{SCI:Fle2004c, author = "P.T. Fletcher", title = "Statistical Variability in Nonlinear Spaces: Application to Shape Analysis and DT-MRI", year = "2004", school = "University of North Carolina Department of Computer Science", month = "August", note = "Ph.D. Thesis", url = "https://publications.utah.edu/publications/fletcher04/fletcher_thesis.pdf", } @Article{SCI:Fre2004a, author = "J. Freire and M. Benedikt", title = "Managing XML Data: An Abridged Overview", journal = "Computing in Science and Engineering", volume = "6", number = "4", pages = "12--19", year = "2004", publisher = "IEEE Computer Society", issn = "1521-9615", keywords = "xml", } @InProceedings{SCI:Fre2004b, author = "J. Freire and M. Ramanath and L. Zhang", title = "A Flexible Infrastructure for Gathering XML Statistics and Estimating Query Cardinality", booktitle = "Proceedings of the 20th International Conference on Data Engineering", pages = "857", year = "2004", isbn = "0-7695-2065-0", url = "https://publications.utah.edu/publications/freire04/Freire_ICDE2004.pdf", } @InProceedings{SCI:Gar2004a, author = "C. Garth and X. Tricoche and G. Scheuermann", title = "Tracking of Vector Field Singularities in Unstructured 3D Time-Dependent Datasets", booktitle = c-VIS2004, pages = "329--336", year = "2004", keywords = "cfd computational fluid dynamics, vector field methods, Poincare index, time dependent topology, poincare index, ncrr", url = "https://publications.utah.edu/publications/garth04/tracking3d.pdf", } @InProceedings{SCI:Gar2004b, author = "C. Garth and X. Tricoche and T. Salzbrunn and T. Bobach and G. Scheuermann", title = "Surface Techniques for Vortex Visualization", booktitle = "Proceedings of Joint Eurographics - {IEEE} {TCVG} Symposium on Visualization", pages = "155--164", year = "2004", month = "May", keywords = "cfd computational fluid dynamics, computational mechanics, fluid structure problems, aerodynamics, ncrr", url = "https://publications.utah.edu/publications/garth04/vissym04.pdf", } @InProceedings{SCI:Gho2004a, author = "A. Ghodrati and D.H. Brooks and R.S. MacLeod", title = "On Selecting and Using Reduced Sets of Leads for Electrocardiographic Imaging Using Reconstruction-Quality Criteria", booktitle = "Proceedings of The SIAM Conference on Imaging Science 2004", year = "2004", month = "May", location = "Salt Lake City, UT", note = "abstract.", keywords = "ncrr", } @InProceedings{SCI:Gho2004b, author = "A. Ghodrati and F. Calderero and D.H. Brooks and G. Tadmor and R.S. MacLeod", title = "A Level Sets Algorithm for the Inverse Problem of Electrocardiography", booktitle = "Proceedings of the Asilomar Conf. on Sig. and Sys.", volume = "2", pages = "1590--1594", year = "2004", month = "November", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr", } @InProceedings{SCI:Goo2004a, author = "C.E. Goodyer and R. Fairlie and D.E. Hart and M. Berzins and L.E. Scales", title = "Calculation of Friction in Steady-State and Transient EHL Simulations Transient Processes in Tribology", booktitle = "Transient Processes in Tribology: Proceeding of the 31st Leeds-Lyon Symposium on Tribology", pages = "579--590", year = "2004", editor = "A.A. Lubrecht and G. Dalmaz", publisher = "Elsevier", keywords = "computational mechanics, EHL, ehl", url = "https://publications.utah.edu/publications/goodyer04/GoodyerFairlieHartBerzinsScales04.pdf", } @TechReport{SCI:Gri2004a, author = "C. Gribble and S.G. Parker and C.D. Hansen", title = "Interactive Volume Rendering of Large Datasets Using the Silicon Graphics Onyx4 Visualization System", number = "UUCS-04-003", year = "2004", institution = "University of Utah School of Computing", month = "January 27th", keywords = "volume rendering, parallel visualization, rhesus, fire pool, csafe c-safe", } @InProceedings{SCI:Gui2004a, author = "J.E. Guilkey and Y. Zhang and J.B. Hoying and J.A. Weiss", title = "Mechanical Simulation of Multicellular Structures with the Material Point Method", booktitle = "Proc 6th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering", year = "2004", month = "March", location = "Madrid, Spain", note = "Winner of the Taylor and Francis Prize for Outstanding Innovation in Computer Methods in Biomechanics and Biomedical Engineering", keywords = "computational mechanics, computational biomechanics, mpm material point method", url = "https://publications.utah.edu/publications/guilkey04/guilkey_cmbbe_2004.pdf", } @InProceedings{SCI:Han2004a, author = "Q. Han and C. Lu and G. Liu and S.M. Pizer and S. Joshi and A. Thall", title = "Representing Multi-Figure Anatomical Objects", booktitle = "Proceedings of the International Symposium on Biomedical Imaging (ISBI)", pages = "1251--1254", year = "2004", location = "Piscataway, NJ", url = "https://publications.utah.edu/publications/han04/ISBI04-Han_multi-fig.pdf", } @InCollection{SCI:Hen2004a, author = "C.S. Henriquez and J.V. Tranquillo and D.M. Weinstein and E.W. Hsu and C.R. Johnson", title = "Three-dimensional Propagation in Mathematic Models: Integrative Model of the Mouse Heart", booktitle = "Cardiac Electrophysiology: From Cell to Bedside", pages = "273--281", year = "2004", editor = "D.P. Zipes and J. Jalife", chapter = "30", publisher = "Saunders", edition = "4th edition", keywords = "forward problems inverse problems forward simulation inverse solutions, forward simulation, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/henriquez04/CardiacElectrophysiologyChapter.pdf", } @Article{SCI:Hop2004a, author = "B. Hopenfeld and J.G. Stinstra and R.S. MacLeod", title = "Mechanism for {ST} Depression Associated with Contiguous Subendocardial Ischemia", journal = j-JCE, volume = "15", number = "10", pages = "1200--1206", year = "2004", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/hopenfeld04/ischemiarev.pdf", } @InCollection{SCI:Iki2004a, author = "M. Ikits and J.M. Kniss and A.E. Lefohn and C.D. Hansen", title = "Volume Rendering Techniques", booktitle = "{GPU} Gems: Programming Techniques, Tipsand Tricks for Real-Time Graphics", pages = "667--692", year = "2004", editor = "Randima Fernando", publisher = "Addison Wesley", keywords = "scalar field methods, volume rendering", } @InProceedings{SCI:Jeo2004a, author = "Won-Ki Jeong and Tolga Tasdizen and Ross Whitaker", title = "Anisotropic Diffusion of Height Field Data using Multigrid Solver on {GPU}", booktitle = "Proceedings {ACM} Workshop on General Purpose Computing on Graphics Processors, 2004", year = "2004", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/wkjeong04/gp04_final.pdf", } @Article{SCI:Joh2004a, author = "C.R. Johnson", title = "Top Scientific Visualization Research Problems", journal = "{IEEE} Computer Graphics and Applications: Visualization Viewpoints", volume = "24", number = "4", pages = "13--17", year = "2004", month = "July/August", keywords = "ncrr", url = "https://publications.utah.edu/publications/crj04/Vis_Viewpoints04.pdf", } @Article{SCI:Joh2004b, author = "C.R. Johnson and R.S. MacLeod and S.G. Parker and D.M. Weinstein", title = "Biomedical Computing and Visualization Software Environments", journal = j-ACM-COM, volume = "47", number = "11", pages = "64--71", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, forward simulation, scalar field methods, scirun, biopse, uintah, ncrr, scirun 2, biotensor, biofem, visualization", url = "https://publications.utah.edu/publications/crj04/ACM-Nov04.pdf", } @Article{SCI:Jos2004a, author = "S. Joshi and B. Davis and M Jomier and G. Gerig", title = "Unbiased Diffeomorphic Atlas Construction for Computational Anatomy", journal = "Neuroimage", volume = "23 Suppl. 1", pages = "S151--S160", year = "2004", url = "https://publications.utah.edu/publications/joshi04/NeuroImage04-Joshi.pdf", } @Article{SCI:Kad2004a, author = "A. Kadlag and A.V. Wanjari and J. Freire and J. Haritsa", title = "Supporting Exploratory Queries in Databases", journal = "Database Systems for Advanced Applications", volume = "2973/2004", pages = "25-26", year = "2004", series = "Lecture Notes in Computer Science (LNCS)", keywords = "database queries", url = "https://publications.utah.edu/publications/kadlag04/Kadlag_LNCS2004.pdf", } @InProceedings{SCI:Kin2004a, author = "G Kindlmann", title = "Superquadric Tensor Glyphs", booktitle = c-VISSYM2004, pages = "147--154", year = "2004", month = "May", keywords = "tensor field methods, diffusion tensor imaging, biopse, ncrr", url = "https://publications.utah.edu/publications/gk04/vissym04kindlmann.pdf", } @InProceedings{SCI:Kin2004b, author = "G.L. Kindlmann and D.M. Weinstein and A.D. Lee and A.W. Toga and P.M. Thompson", title = "Visualization of Anatomic Covariance Tensor Fields", booktitle = "Proceedings of the {IEEE} Engineering in Medicine and Biology Society 26th Annual International Conference", year = "2004", keywords = "ncrr, biopse", url = "https://publications.utah.edu/publications/gk04/embs04.pdf", } @InProceedings{SCI:Kin2004c, author = "G. Kindlmann and A. L. Alexander and M. Lazar and J. Lee and T. Tasdizen and R.T. Whitaker", title = "An Algorithm for Moment-Based Global Registration of Echo Planar Diffusion-Weighted Images", booktitle = "Proceedings of 12th Annual ISMRM", pages = "2200", year = "2004", } @TechReport{SCI:Kin2004d, author = "G. Kindlmann", title = "Visualization and Analysis of Diffusion Tensor Fields", number = "UUCS-04-014", year = "2004", institution = "School of Computing, University of Utah", type = "Technical Report", note = "PhD Thesis", keywords = "diffusion tensor imaging", url = "https://publications.utah.edu/publications/gk04/UUCS-04-014.pdf", } @Article{SCI:Kir2004a, author = "R.M. Kirby and Z. Yosibash", title = "Solution of Von-Karman Dynamic Non-linear Plate Equations Using a Pseudo-spectral Method", journal = j-CMAME, volume = "193", number = "6-8", pages = "575-599", year = "2004", keywords = "fluid structure problems, computational mechanics, Scientific computing, scientific computing", url = "https://publications.utah.edu/publications/kirby04/Kirby-6.pdf", } @InCollection{SCI:Kir2004b, author = "R.M. Kirby and G.E. Karniadakis", title = "Spectral Element and hp Methods", booktitle = "Encyclopedia of Computational Mechanics", volume = "3", pages = "61--88", year = "2004", editor = "E. Stein and R. de Borst and T.J.R. Hughes", chapter = "3", publisher = "John Wiley and Sons, NY", } @Article{SCI:Kir2004d, author = "R.M. Kirby and Z. Yosibash", title = "Solution of von-Karman Dynamic Non-Linear Plate Equations Using a Pseudo-Spectral Method", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "193", number = "6-8", pages = "575--599", year = "2004", url = "https://publications.utah.edu/publications/kirby04/Kirby-6.pdf", } @InProceedings{SCI:Kni2004a, author = "J.M. Kniss and J.P. Schulze and U. W{\"o}ssner and P. Winkler and U. Lang and C.D. Hansen", title = "Medical Applications of Multi-field Volume Rendering and VR Techniques", booktitle = c-VISSYM2004, pages = "249--254", year = "2004", keywords = "volume rendering, ncrr", url = "https://publications.utah.edu/publications/jmk04/kniss04MAMF.pdf", } @Article{SCI:Kri2004a, author = "L. Krishnan and J.A. Weiss and M.D. Wessman MD and J.B. Hoying", title = "Design and Application of a Test System for Viscoelastic Characterization of Collagen Gels", journal = j-TE, volume = "10", number = "(1-2)", pages = "241--252", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, angiogenesis", url = "https://publications.utah.edu/publications/krishnan04/krishnan_tissue_eng_2004.pdf", } @InProceedings{SCI:Lan2004a, author = "D. Laney and V. Pascucci", title = "Progressive Compression of Volumetric Subdivision Meshes", booktitle = "Proceedings of the International Symposium on 3D Data Processing, Visualization, and Transmission (3DPVT)", pages = "293--300", year = "2004", month = "September", note = "UCRL-CONF-203679", } @Article{SCI:Lef2004a, author = "A.E. Lefohn and J.M. Kniss and C.D. Hansen and R.T. Whitaker", title = "A Streaming Narrow-Band Algorithm: Interactive Deformation and Visualization of Level Sets", journal = j-TVCG, pages = "422--433", year = "2004", keywords = "scalar field methods, volume rendering, ip image processing signal processing, segmentation, surface processing, Imaging, modeling, GPU, level-set methods, imaging, deformable models, gpu, level-set methods level-sets, streaming computation, virtual memory, ncrr", url = "https://publications.utah.edu/publications/lefohn04/lefohn_tvcg03.pdf", } @InProceedings{SCI:Lin2004a, author = "L. Linsen and V. Pascucci and M.A. Duchaineau and B. Hamann and K.I. Joy", title = "Wavelet-Based Multiresolution with N-th-Root-of-2", booktitle = "Geometric Modeling, Dagstuhl 2002. Proceedings of the Dagstuhl Seminar on Geometric Modeling", year = "2004", address = "Dagstuhl, Germany", month = "May", note = "UCRL-PROC-208699", } @InCollection{SCI:Lin2004b, author = "L. Linsen and J.T. Gray and V. Pascucci and M.A. Duchaineau and B. Hamann and K.I. Joy", title = "Hierarchical Large-scale Volume Representation with 3rd-root-of-2 Subdivision and Trivariate B-spline Wavelets", booktitle = "Geometric Modeling for Scientific Visualization", pages = "359--377", year = "2004", editor = "G. Brunnett and B. Hamann and H. Mueller", publisher = "Springer-Verlag", } @InProceedings{SCI:Lin2004c, author = "L. Linsen and V. Pascucci and M.A. Duchaineau and B. Hamann and K.I. Joy", title = "Wavelet-Based Multiresolution with n-th-root-of-2", booktitle = "Proceedings of Geometric Modeling, Dagstuhl 2002", year = "2004", month = "May", location = "Dagstuhl, Germany", note = "UCRL-PROC-208699", } @InProceedings{SCI:Liv2004a, author = "Y. Livnat and X. Tricoche", title = "Interactive Point Based Isosurface Extraction", booktitle = c-VIS2004, pages = "457--464", year = "2004", keywords = "scalar field methods, isosurface extraction, parallel visualization, visible human, point based methods, hybrid surface representation, ncrr", url = "https://publications.utah.edu/publications/yarden04/pisa.pdf", } @InProceedings{SCI:Lor2004a, author = "P. Lorenzen and B. Davis and S. Joshi", title = "Model Based Symmetric Information Theoretic Large Deformation Multi-Modal Image Registration", booktitle = "Proceedings of the International Symposium on Biomedical Imaging (ISBI)", pages = "720--723", year = "2004", month = "April", location = "Piscataway, NJ", url = "https://publications.utah.edu/publications/lorenzen04/ISBI04-Lorenzen-MultiModal.pdf", } @InProceedings{SCI:Luj2004a, author = "T.J. Lujan and M.S. Dalton and S.P. Lake and B.J. Ellis and T.D. Rosenberg and J.A. Weiss", title = "{ACL} Injury Alters {MCL} Strain During Anterior-Posterior but not Varus-Valgus Loading", booktitle = c-ORS2004, volume = "29", pages = "1272", year = "2004", month = "March", location = "San Francisco, CA", } @InProceedings{SCI:Mac2004a, author = "R.S. Macleod and D.M. Weinstein and J.D. de St. Germain and D.H. Brooks and C.R. Johnson and S.G. Parker", title = "SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization", booktitle = "Proceedings of the Int. Symp. on Biomed. Imag.", pages = "640--643", year = "2004", month = "April", location = "Arlington, Va", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions, scirun, biopse", url = "https://publications.utah.edu/publications/macleod04/paper-utah.pdf", } @InProceedings{SCI:Mag2004a, author = "M. Magnor and G. Kindlmann and C.D. Hansen and N. Duric", title = "Constrained Inverse Volume Rendering for Planetary Nebulae", booktitle = c-VIS2004, pages = "83--90", year = "2004", keywords = "scalar field methods, volume rendering, simian, inverse constrained volume rendering", url = "https://publications.utah.edu/publications/magnor04/Magnor_Vis2004.pdf", } @InProceedings{SCI:Mas2004a, author = "A. Mascarenhas and M. Isenburg and V. Pascucci and J. Snoeyink", title = "Encoding Volumetric Meshes For Streaming Isosurface Extraction", booktitle = "Proceedings of the International Symposium on 3D Data Processing, Visualization, and Transmission (3DPVT)", pages = "293--300", year = "2004", month = "September", note = "UCRL-PROC-208696", } @InProceedings{SCI:Mcc2004a, author = "P. McCormick and J. Inman and J. Ahrens and G. Roth and C.D. Hansen", title = "Hardware-Accelerated System for Quantitatively Driven Visualization and Analysis", booktitle = c-VIS2004, pages = "171--178", year = "2004", keywords = "volume rendering, hardware acceleration, visualization systems, multivariate visualization", url = "https://publications.utah.edu/publications/mccormick04/vis04-scout04.pdf", } @InProceedings{SCI:Pao2004a, author = "A. Paoluzzi and V. Pascucci and G. Scorzelli", title = "Progressive BSP Representation and Boolean Operations for Dimension-Independent Polyhedra", booktitle = "ACM Symposium on Solid Modeling", pages = "203-211", year = "2004", month = "June", note = "UCRL-PROC-208679", } @InProceedings{SCI:Pas2004b, author = "V. Pascucci", title = "Isosurface Computation Made Simple: Hardware Acceleration, Adaptive Refinement and Tetrahedral Stripping", booktitle = "Proceedings of the Joint Eurographics - {IEEE} {TVCG} Symposium on Visualization (VisSym)", pages = "293--300", year = "2004", month = "May", note = "UCRL-CONF-202459", } @InProceedings{SCI:Pes2004a, author = "S. Pesco and P. Lindstrom and V. Pascucci and C.T. Silva", title = "Implicit Occluders", booktitle = c-VVIS2004, pages = "47--54", year = "2004", url = "https://publications.utah.edu/publications/pesco04/Pesco04_ImplicitOccluders.pdf", } @InProceedings{SCI:Pha2004a, author = "N.S. Phatak and J.L. McCann and Q. Sun and S.E. Kim and D.L. Parker and E.K. Jeong and R.K. Sanders and A.I. Veress and J.A. Weiss", title = "Noninvasive Measurement of Ligament Strain", booktitle = c-ORS2004, volume = "29", pages = "893", year = "2004", month = "March", location = "San Francisco, {CA}", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, ip image processing signal processing, segmentation, warping, deformable image registration", } @Article{SCI:Ram2004a, author = "S.D. Ramsey and J.T. Johnson III and C.D. Hansen", title = "Adaptive Temporal Tone Mapping", journal = "Computer Graphics and Imaging", pages = "124--128", year = "2004", keywords = "ip image processing signal processing, tone mapping, temporal tone mapping, adaptive temporal tone mapping, undergrad", url = "https://publications.utah.edu/publications/ramsey04/attm.pdf", } @Book{SCI:Sac2004b, author = "F. B. Sachse", title = "Computational Cardiology: Modeling of Anatomy, Electrophysiology, and Mechanics", year = "2004", series = "LNCS 2966", publisher = "Springer", address = "Berlin, Heidelberg, New York", } @InProceedings{SCI:Sam2004a, author = "A.A. Samsonov and C.R. Johnson.", title = "Removal of Intensity Bias in Magnitude Spin-Echo {MRI} Images by Nonlinear Diffusion Filtering", booktitle = c-MI2004, volume = "5370", pages = "743--752", year = "2004", location = "San Diego, CA", keywords = "ip image processing signal processing, tensor field methods, diffusion tensor imaging, vector field methods, scientific visualization, fire pool, forward problems inverse problems forward simulation inverse solutions finite elements, ncrr, bisti", url = "https://publications.utah.edu/publications/samsonov04/spie2004.pdf", } @InProceedings{SCI:Sam2004c, author = "A.A. Samsonov and C.R. Johnson", title = "Non-Cartesian {POCSENSE}", booktitle = c-ISMRM2004, pages = "2648", year = "2004", location = "Kyoto, Japan", keywords = "ip image processing signal processing, neuro brain, ncrr, scientific computing, POCSENSE, pocsense, bisti", url = "https://publications.utah.edu/publications/samsonov04/ISMRM04_01.pdf", } @InProceedings{SCI:Sam2004d, author = "A.A. Samsonov and C.R. Johnson", title = "Unbiased Nonlinear Filtering of Fast Spin Echo {MRI} Images", booktitle = c-ISMRM2004, pages = "760", year = "2004", location = "Kyoto, Japan", keywords = "ip image processing signal processing, neuro brain, ncrr, scientific computing, mri, bisti", url = "https://publications.utah.edu/publications/samsonov04/ISMRM04_03.pdf", } @InProceedings{SCI:Sam2004e, author = "A.A. Samsonov and E.G. Kholmovski and C.R. Johnson", title = "Phase-Constrained Reconstruction of Sensitivity-Encoded {MRI} Data with {POCSENSE}", booktitle = c-ISMRM2004, pages = "2647", year = "2004", location = "Kyoto, Japan", keywords = "ip image processing signal processing, neuro brain, ncrr, scientific computing, mri, POCSENSE, pocsense, bisti", url = "https://publications.utah.edu/publications/samsonov04/ISMRM04_02.pdf", } @Article{SCI:Sam2004f, author = "A.A. Samsonov and C.R. Johnson", title = "Noise-Adaptive Nonlinear Diffusion Filtering of {MR} Images with Spatially Varying Noise Levels", journal = j-MRM, volume = "52", pages = "798--806", year = "2004", keywords = "ip image processing signal processing, segmentation, ncrr, bisti, Anisotropid Diffusion Filtering, MRI, Robust Statistics, SENSE, anisotropid diffusion filtering, mri, robust statistics, sense", url = "https://publications.utah.edu/publications/samsonov04/AnisotropicFilterSENSE.pdf", } @Article{SCI:Sam2004g, author = "A.A. Samsonov and E.G. Kholmovski and D.L. Parker and C.R. Johnson", title = "{POCSENSE}: {POCS}-based reconstruction for sensitivity encoded {MRI}", journal = j-MRM, volume = "52", pages = "1397--1406", year = "2004", keywords = "pocsense, ncrr, bisti", url = "https://publications.utah.edu/publications/samsonov04/pocsense.pdf", } @InProceedings{SCI:Sam2004h, author = "A.A. Samsonov and C.R. Johnson", title = "Multicoil {MRI} Artifacts Correction Using Parallel Pocs", booktitle = c-ISMRM2004, year = "2004", keywords = "ncrr, bisti", } @InProceedings{SCI:San2004a, author = "A.R. Sanderson and C.R. Johnson and R.M. Kirby", title = "Display of Vector Fields Using a Reaction Diffusion Model", booktitle = c-VIS2004, pages = "115--122", year = "2004", keywords = "tensor field methods, stress tensor, strain tensor, LIC, lic, vector field methods, ncrr", url = "https://publications.utah.edu/publications/allen04/sanderson_et_al_final_267.pdf", } @InProceedings{SCI:Sch2004a, author = "U. Schmitt and C.H. Wolters and A. Anwander and T. Knoesche", title = "STR: A New Spatio-Temporal Approach for Accurate and Efficient Current Density Reconstruction", booktitle = c-BIOMAG2004, pages = "591--592", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr", } @Article{SCI:She2004a, author = "H.-W. Shen and G.-S. Li and U. Bordoloi", title = "Interactive Visualization of Three-Dimensional Vector Fields with Flexible Appearance Control", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "10", number = "4", pages = "434--445", year = "2004", keywords = "vector field methods", url = "https://publications.utah.edu/publications/shen04/tvcg04.pdf", } @Article{SCI:Sim2004a, author = "J. Simpson and S.J. Balling", title = "{ANNOT3D} and Packaging of 3D Visualizations for Educational Purposes", journal = c-MMVR2004, pages = "(in press)", year = "2004", month = "January", location = "Newport Beach, {CA}", keywords = "scalar field methods, annot3d, vr virtual reality haptics, undergrad", } @Article{SCI:Sta2004a, author = "K.J. Stabile and J. Pfaeffle and J.A. Weiss and K. Fisher and M.M. Tomaino", title = "Bi-directional Mechanical Properties of the Human Forearm Interosseous Ligament", journal = j-OR, volume = "22", number = "3", pages = "607--612", year = "2004", url = "https://publications.utah.edu/publications/stabile04/stabile_JOR_2004.pdf", } @Article{SCI:Ste2004a, author = "F. Stenger and T. Cook and R.M. Kirby", title = "Sinc Solution of Biharmonic Problems", journal = "Canadian Applied Mathematics Quarterly", volume = "12", number = "3", pages = "391--413", year = "2004", url = "https://publications.utah.edu/publications/stenger04/Stenger_CanApplMathQuart04.pdf", } @TechReport{SCI:Tas2004a, author = "T. Tasdizen and D.M. Weinstein and J.N. Lee", title = "Automatic Tissue Classification for the Human Head from Multispectral {MRI}", number = "UUSCI-2004-001", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "March", keywords = "Multispectral MRI, tissue classification, ip image processing signal processing, segmentation, multispectral mri, ncrr", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-001.pdf", } @Article{SCI:Tas2004b, author = "T. Tasdizen and R.T. Whitaker", title = "Higher-order nonlinear priors for surface reconstruction", journal = j-PAMI, volume = "26", number = "7", pages = "878--891", year = "2004", month = "July", keywords = "ip image processing signal processing, surface processing, imaging, ncrr", } @TechReport{SCI:Tas2004c, author = "T. Tasdizen and R.T. Whitaker", title = "An Efficient, Geometric Multigrid Solver for the Anisotropic Diffusion Equation in Two and Three Dimensions", number = "UUSCI-2004-002", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "June", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-002.pdf", } @InProceedings{SCI:Tri2004a, author = "X. Tricoche and C. Garth and G. Kindlmann and E. Deines and G. Scheuermann and Markus Ruetten and Charles D. Hansen", title = "Visualization of Intricate Flow Structures for Vortex Breakdown Analysis", booktitle = c-VIS2004, pages = "187--194", year = "2004", keywords = "cfd computational fluid dynamics, volume rendering, transfer functions, vector field methods, vortex analysis, parametric topology, cutting planes, ncrr", url = "https://publications.utah.edu/publications/tricoche04/vis04b.pdf", } @InProceedings{SCI:Tri2004b, author = "X. Tricoche and C. Garth and T. Bobach and G. Scheuermann and M. Ruetten", title = "Accurate and Efficient Visualization of Flow Structures in a Delta Wing Simulation.", booktitle = "34th AIAA Fluid Dynamics Conference and Exhibit", year = "2004", publisher = "American Institute of Aeronautics and Astronautics AIAA", month = "June", location = "Portland, OR.", keywords = "cfd computational fluid dynamics, scalar field methods, volume rendering, transfer functions, vector field methods", url = "https://publications.utah.edu/publications/Tri2004b/aiaa04.pdf", } @TechReport{SCI:Ues2004a, author = "D. Uesu and L. Bavoil and S. Fleishman and C.T. Silva", title = "Simplification of Unstructured Tetrahedral Meshes by Point-Sampling", number = "UUSCI-2004-005", year = "2004", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "adaptive mesh generation", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2004-005.pdf", } @Article{SCI:Van2004a, author = "R. Van Uitert and C.R. Johnson and L. Zhukov", title = "Influence of Head Tissue Conductivity in Forward and Inverse Magnetoencephalographic Simulations Using Realistic Head Models", journal = j-BME, volume = "51", number = "12", pages = "2129--2137", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse meg, forward simulation, biopse, neuro brain, ncrr", url = "https://publications.utah.edu/publications/vanuiter04/IEEE_TBME04.pdf", } @InCollection{SCI:Van2004b, author = "M.J. van Kreveld and R. van Oostrum and C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "Efficient contour tree and minimum seed set construction", booktitle = "Surface Topological Data Structures: An Introduction for Geographical Information Science", pages = "71--86", year = "2004", editor = "Sanjay Rana and Jo Wood", publisher = "John Wiley & Sons", month = "May", note = "UCRL-BOOK-200018", } @InCollection{SCI:Ver2004a, author = "A.I. Veress and N. Phatak and J.A. Weiss", title = "Deformable Image Registration with Hyperelastic Warping", booktitle = "Topics in Biomedical Engineering International Book Series", pages = "487--533", year = "2004", editor = "J.S. Suri and D.L Wilson and S. Laxminarayan", publisher = "Springer", keywords = "deformable image registration, warping, forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, scalar field methods, volume rendering, ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/Ver2004a/jasbc_aiv_final3.pdf", } @InProceedings{SCI:Ver2004b, author = "A.I. Veress and W.P. Segars and B.M.W. Tsui and J.A. Weiss and G.T. Gullberg", title = "Physiologically Realistic LV Models to Produce Normal and Pathological Image and Phantom Data", booktitle = "Proceedings of the {IEEE} Medical Imaging Conference", year = "2004", month = "October", location = "Rome", url = "https://publications.utah.edu/publications/veress04/Veress_IEEE_MIC2004_2004.pdf", } @Article{SCI:Wan2004a, author = "X. Wan and D. Xiu and G.E. Karniadakis", title = "Stochastic Solutions for the Two-dimensional Advection-Diffusion Equation", journal = "SIAM Journal on Scientific Computing", volume = "26", number = "2", pages = "578--590", year = "2004", keywords = "generalized polynomial chaos, advection-diffusion, stochastic modeling", url = "https://publications.utah.edu/publications/wan04/Wan_SIAM_JSC2004.pdf", } @InProceedings{SCI:Wol2004a, author = "C.H. Wolters and L. Grasedyck and A. Anwander and H. Hackbusch", title = "Efficient Computation of Lead Field Bases and Influence Matrix for the FEM-Based EEG and MEG Inverse Problem", booktitle = c-BIOMAG2004, pages = "104--107", year = "2004", month = "August", location = "Boston, MA", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, ncrr", url = "https://publications.utah.edu/publications/wolters04/wolters_grasedyck_et_al_biomag2004.pdf", } @Article{SCI:Wol2004b, author = "C.H. Wolters and L. Grasedyck and W. Hackbusch", title = "Efficient Computation of Lead Field Bases and Influence Matrix for the FEM-Based EEG and MEG Inverse Problem", journal = "Inverse Problems", volume = "20", number = "4", pages = "1099--1116", year = "2004", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, ncrr", url = "https://publications.utah.edu/publications/wolters04/IP_wolters_2004.pdf", } @InProceedings{SCI:Wol2004c, author = "C.H. Wolters and A. Anwander and B. Maess and R.S. MacLeod and A.D. Friederici", title = "The Influence of Volume Conduction Effects on the EEG/MEG Reconstruction of the Sources of the Early Left Anterior Negativity", booktitle = c-EMBS2004, volume = "5", pages = "3569--3572", year = "2004", month = "September", location = "San Francisco, CA", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, finite elements, neuro brain, ncrr", url = "https://publications.utah.edu/publications/wolters04/wolters_EMBS_SF_2004.pdf", } @InProceedings{SCI:Wol2004d, author = "C.H. Wolters and A. Anwander and S. Reitzinger and G. Haase", title = "Algebraic Multigrid with Multiple Right-Hand-Side Treatment for an Efficient Computation of EEG and MEG Lead Field Bases", booktitle = c-BIOMAG2004, pages = "465--466", year = "2004", month = "August", location = "Boston, MA", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, neuro brain, ncrr", url = "https://publications.utah.edu/publications/wolters04/wolters_biomag2004_poster.pdf", } @InProceedings{SCI:Wol2004e, author = "C.H. Wolters and A. Anwander and S. Reitzinger and G. Haase", title = "Avoiding the Problem of FE Meshing: A Parallel Algebraic Multigrid with Multiple Right-Hand Side Treatment for an Efficient and Memory-Economical Computation of High Resolution EEG and MEG Lead Field Bases", booktitle = c-EMBS2004, year = "2004", month = "September", location = "San Francisco, CA", note = "poster", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, inverse meg, finite elements, neuro brain, ncrr", url = "https://publications.utah.edu/publications/wolters04/wolters_anwander_et_al_biomag2004_poster.pdf", } @Article{SCI:Xiu2004a, author = "D. Xiu and G.E. Karniadakis", title = "Supersensitivity Due to Uncertain Boundary Conditions", journal = "International Journal for Numerical Methods in Engineering", volume = "61", number = "12", pages = "2114--2138", year = "2004", keywords = "generalized polynomial chaos, stochastic Burgers' equation, supersensitivity, random boundary conditions", url = "https://publications.utah.edu/publications/xiu04/Xiu_IJNME2004.pdf", } @Article{SCI:Xiu2004b, author = "D. Xiu and D.M. Tartakovsky", title = "A Two-scale Non-perturbative Approach to Uncertainty Analysis of Diffusion in Random Composites", journal = "SIAM Journal on Multiscale Modeling and Simulation", volume = "2", number = "4", pages = "662--674", year = "2004", keywords = "random fields, moment equations, random domain decomposition, polynomial chaos", url = "https://publications.utah.edu/publications/xiu04/Xiu_SIAM_JMMS2004.pdf", } @Article{SCI:Yos2004a, author = "Z. Yosibash and R.M. Kirby and D. Gottlieb", title = "Collocation Methods for the Solution of Von-Karman Dynamic Non-Linear Plate Systems", journal = "Journal of Computational Physics", volume = "200", number = "2", pages = "432--461", year = "2004", url = "https://publications.utah.edu/publications/yosibash04/yoshibash_J-CompPhys04.pdf", } @InProceedings{SCI:Zha2004a, author = "Y. Zhang and J.E. Guilkey and J.B. Hoying and J.A. Weiss", title = "Mechanical Simulation of Multicellular Structures with the Material Point Method", booktitle = c-CMBBE2004, pages = "(6 pages)", year = "2004", month = "March", keywords = "computational mechanics, mpm material point method, computational biomechanics, mrl", } @InProceedings{SCI:Zha2004b, author = "K. Zhang and K. Damevski and V. Venkatachalapathy and S.G. Parker", title = "{SCIR}un2: A {CCA} Framework for High Performance Computing", booktitle = c-HIPS2004, year = "2004", month = "April", url = "https://publications.utah.edu/publications/kzhang05/kemingzhang.pdf", } @Article{SCI:Ale2003a, author = "M. Alexa and J. Behr and D. Cohen-Or and S. Fleishman and C.T. Silva and D. Levin", title = "Computing and Rendering Point Set Surfaces", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "9", number = "1", pages = "3--15", year = "2003", issn = "1077-2626", url = "https://publications.utah.edu/publications/alexa03/tvcg2003acr.pdf", } @Article{SCI:Alt2003a, author = "O. Alter and P.O. Brown and D. Botstein", title = "Generalized Singular Value Decomposition for Comparative Analysis of Genome-Scale Expression Datasets of Two Different Organisms", journal = "Proceedings of the National Academy of Sciences", volume = "100", number = "6", pages = "3351--3356", year = "2003", publisher = "Proceedings of the National Academy of Sciences", month = "March", url = "https://publications.utah.edu/publications/Alt2003a/Alter_PNAS2003.pdf", } @InProceedings{SCI:Bap2003a, author = "A. Baptista and T. Leen and Y. Zhang and A. Chawla and D. Maier and Wu-chang Feng and Wu-chi Feng and J. Walpole and C.T. Silva and J. Freire", title = "Environmental Observation and Forecasting Systems: Vision, Challenges and Successes of a Prototype", booktitle = "Proceedings of the International Society for Environmental Information Sciences Annual Conference (ISEIS '2003) on Systems Science and Information Technology for Environmental Applications", year = "2003", month = "July", location = "Regina, Sask, Canada", } @InProceedings{SCI:Ben2003a, author = "M. Benedikt and C.Y. Chan and W. Fan and J. Freire and R. Rastogi", title = "Capturing Both Types and Constraints in Data Integration", booktitle = "Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data", pages = "277--288", year = "2003", isbn = "1-58113-634-X", url = "https://publications.utah.edu/publications/benedikt03/Benedikt_SIGMOD2003.pdf", } @Article{SCI:Ber2003b, author = "M. Berzins and A.G. Wilson", title = "Spatial Interaction Models and Fisher Information Theory A New Calibration Model", journal = "Environment and Planning", volume = "35", pages = "2161--2176", year = "2003", url = "https://publications.utah.edu/publications/berzins03/MBAGWFINALDRAFT.pdf", } @InProceedings{SCI:Ber2003c, author = "M. Bertram and X. Tricoche and H. Hagen", title = "Adaptive Smooth Scattered Data Approximation for Largescale Terrain Visualization", booktitle = "Proceedings of the Joint Eurographics-{IEEE} {TCVG} Symposium on Visualization: Data Visualization 2003", pages = "177--184", year = "2003", url = "https://publications.utah.edu/publications/bertram03/terrain.pdf", } @Article{SCI:Boh2003a, author = "P. Bohannon and J. Freire and J. Haritsa and M. Ramanath and P. Roy and J. Simeon", title = "Bridging the XML-Relational Divide with LegoDB: A Demonstration", journal = "International Conference on Data Engineering", pages = "759", year = "2003", issn = "1063-6382", url = "https://publications.utah.edu/publications/bohannon03/Bohannon_ICDE2003.pdf", } @InProceedings{SCI:Bor2003a, author = "R. Borgo and R. Scopigno and P. Cignoni and V. Pascucci", title = "A Progressive Subdivision Paradigm ({PSP})", booktitle = "Proceedings of the Conference on Vision, Modeling and Visualization 2003 ({VMV}-03)", pages = "441--450", year = "2003", editor = "T. Ertl and B. Girod and G. Greiner and H. Niemann and H.-P. Seidel and E. Steinbach and R. Westermann", publisher = "Aka GmbH", address = "Berlin, Germany", month = "Nov", note = "UCRL-PROC-208557", } @InProceedings{SCI:Bre2003a, author = "P.-T. Bremer and H. Edelsbrunner and B. Hamann and V. Pascucci", title = "A Multi-resolution Data Structure for Two-dimensional {Morse} Functions", booktitle = "Proceedings of {IEEE} Conference on Visualization ({VIS}-03)", pages = "139--146", year = "2003", month = "October", note = "UCRL-JC-154014", } @InProceedings{SCI:Cat2003a, author = "J. Cates and R.T. Whitaker", title = "Interactive Medical Image Segmentation Using the Insight Toolkit", booktitle = c-RSNA2003, year = "2003", month = "November", keywords = "ip image processing signal processing, segmentation, insight itk", } @Article{SCI:Coh2003a, author = "D. Cohen-Or and Y.L. Chrysanthou and C.T. Silva and F. Durand", title = "A Survey of Visibility for Walkthrough Applications", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "9", number = "3", pages = "412--431", year = "2003", publisher = "IEEE Computer Society", address = "Los Alamitos, CA, USA", issn = "1077-2626", url = "https://publications.utah.edu/publications/cohen-or03/tvcg2003bcr.pdf", } @InProceedings{SCI:Col2003a, author = "M. Cole and S.G. Parker", title = "Dynamic Compilation of C++ Template Code", booktitle = "Scientific Programming", volume = "11", pages = "321--327", year = "2003", publisher = "IOS Press", keywords = "ncrr, scirun, problem solving environments", url = "https://publications.utah.edu/publications/mcole01/dyn.pdf", } @InProceedings{SCI:Col2003b, author = "K. Cole-McLaughlin and H. Edelsbrunner and J. Harer and V. Natarajan and V. Pascucci", title = "Loops in Reeb Graphs of 2-Manifolds", booktitle = "Proceedings of the 19th ACM Symposium on Computational Geometry", pages = "344--350", year = "2003", month = "June", note = "UCRL-JC-151933", } @InProceedings{SCI:Col2003c, author = "K. Cole-McLaughlin and H. Edelsbrunner and J. Harer and V. Natarajan and V. Pascucci", title = "Loops in Reeb Graphs of 2-Manifolds", booktitle = "Proceedings of the 19th ACM Symposium on Computational Geometry", pages = "344--350", year = "2003", month = "June", note = "UCRL-JC-151933", } @Article{SCI:Cor2003a, author = "A. Corlan and R.S. MacLeod and L.D. Ambroggi", title = "Low Variability of Autocorrelation Maps with Intrathoracic Heart Position", journal = j-IJBEM, volume = "5", number = "1", pages = "139--140", year = "2003", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/corlan03/ICE03-Corlan.pdf", } @InProceedings{SCI:Cor2003b, author = "W. Correa and J. Klosowski and C.T. Silva", title = "Visibility-Based Prefetching for Interactive Out-Of-Core Rendering", booktitle = "Proceedings of the 2003 {IEEE} Symposium on Parallel and Large-Data Visualization and Graphics", pages = "2", year = "2003", isbn = "0-7695-2091-X", url = "https://publications.utah.edu/publications/correa03/pvg2003.pdf", } @Article{SCI:Cor2003c, author = "W. Correa and J. Klosowski and C.T. Silva", title = "Out-Of-Core Sort-First Parallel Rendering for Cluster-Based Tiled Displays", journal = "Parallel Computing", volume = "29", number = "3", pages = "325--338", year = "2003", url = "https://publications.utah.edu/publications/correa03/pc2003cr.pdf", } @InProceedings{SCI:Dam2003b, author = "K. Damevski and S.G. Parker", title = "Parallel Remote Method Invocation and M-by-N Data Redistribution", booktitle = "Proceedings of the 4th Los Alamos Computer Science Institute Symposium", pages = "(published on CD)", year = "2003", keywords = "remote visualization, parallel visualization, pse problem solving environments, cca", url = "https://publications.utah.edu/publications/damevski03/MxNPaperR.pdf", } @InProceedings{SCI:Dem2003a, author = "D.E. DeMarle and S.G. Parker and M. Hartner and C. Gribble and C.D. Hansen", title = "Distributed Interactive Ray Tracing for Large Volume Visualization", booktitle = "{IEEE} Symposium on Parallel Visualization and Graphics", pages = "87--94", year = "2003", month = "October", location = "Seattle, Wa.", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, Large volume visualization, rtrt, scientific visualization, large volume visualization", url = "https://publications.utah.edu/publications/demarle03/dirt_vis2003.pdf", } @InProceedings{SCI:Dou2003a, author = "C.C. Douglas and M. Cole and Y. Efendiev and R. Ewing and V. Ginting and C.R. Johnson and G.M. Jones and R. Lazarov and C. Shannon and J. Simpson", title = "Workshop on Dynamic Data-Driven Application Systems", booktitle = "ICCS 2003", year = "2003", month = "June 2-3", location = "Melbourne, Australia", keywords = "scirun, pse, problem solving environments, data driven", url = "https://publications.utah.edu/publications/douglas03/douglas.pdf", } @InProceedings{SCI:Dou2003b, author = "C.C. Douglas and C.E. Shannon and Y. Efendiev and R.E. Ewing and V. Ginting and R. Lazanov and M.J. Cole and G.M. Jones and C.R. Johnson and J. Simpson", title = "A Note on Dynamic Data Driven Application Simulation ({DDDAS}) Using Virtual Telemetry", booktitle = "International Conference on Parallel Algorithms and Computing Environments", pages = "pp.193--198", year = "2003", keywords = "scirun, pse, problem solving environments, data driven", url = "https://publications.utah.edu/publications/douglas03/icpace2003.pdf", } @InProceedings{SCI:Ede2003a, author = "H. Edelsbrunner and J. Harer and V. Natarajan and V. Pascucci", title = "Morse Complexes for Piecewise Linear 3-Manifolds", booktitle = "Proceedings of the 19th ACM Symposium on Computational Geometry", pages = "361--370", year = "2003", month = "June", note = "UCRL-PROC-208698", } @InProceedings{SCI:Fai2003a, author = "R. Fairlie and C.E. Goodyer and M. Berzins and L.E. Scales", title = "Numerical Modelling of Thermal Effects in Elastohydrodynamic Lubrication Solvers", booktitle = "Tribological Research and Design for Engineering Systems, Proceedings of the 29th Leeds-Lyon Symposium on Tribology", pages = "675--683", year = "2003", editor = "D. Dowson et al.", publisher = "Elsevier", keywords = "EHL", url = "https://publications.utah.edu/publications/fairlie03/leedslyon02pap.pdf", } @Article{SCI:Fle2003a, author = "P.T. Fletcher and S. Joshi and C. Lu and S. Pizer", title = "Gaussian Distributions on Lie Groups and Their Application to Statistical Shape Analysis", journal = "Inf Process Med Imaging", volume = "18", pages = "450--462", year = "2003", note = "Runner-up for the Francois Erbsmann Prize", url = "https://publications.utah.edu/publications/fletcher03/IPMI03_Fletcher_GausDist.pdf", } @InProceedings{SCI:Fle2003b, author = "P.T. Fletcher and C. Lu and S. Joshi", title = "Statistics of Shape via Principal Component Analysis on Lie Groups", booktitle = "Proceedings of the Conference on Computer Vision and Pattern Recognition (CVPR)", pages = "95--101", year = "2003", month = "June", location = "Los Alamitos, CA", url = "https://publications.utah.edu/publications/fletcher03/CVPR03_Fletcher_StatsShape.pdf", } @Article{SCI:Fle2003c, author = "S. Fleishman and M. Alexa and D. Cohen-Or and C.T. Silva", title = "Progressive Point Set Surfaces", journal = "ACM Transactions on Graphics (TOG)", volume = "22", number = "4", pages = "997--1011", year = "2003", issn = "0730-0301", url = "https://publications.utah.edu/publications/fleishman03/ppss.pdf", } @Article{SCI:Fre2003a, author = "J. Freire and J. Simeon", title = "Adaptive XML Shredding: Architecture, Implementation, and Challenges", journal = "Efficiency and Effectiveness of XML Tools and Techniques and Data Integration over the Web", volume = "2590/2008", pages = "104--116", year = "2003", series = "Lecture Notes in Computer Science (LNCS)", url = "https://publications.utah.edu/publications/freire03/Freire_LNCS2003.pdf", } @Article{SCI:Gar2003a, author = "J.C. Gardiner and J.A. Weiss", title = "Subject-Specific Finite Element Analysis of the Human Medial Collateral Ligament During Valgus Knee Loading", journal = "Journal of Orthopaedic Research", volume = "21", pages = "1098--1106", year = "2003", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, forward problems inverse problems forward simulation inverse solutions, computational biomechanics, ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/gardiner03/gardiner_jor_2003.pdf", } @InProceedings{SCI:Ger2003a, author = "J.D. de St. Germain and S.G. Parker", title = "Software Integration in an Academic Environment", booktitle = "Software Quality Forum (SQF)", pages = "(published on CD)", year = "2003", month = "March", location = "Arlington, Virginia", keywords = "SCIRun, scirun, biopse, uintah, scirun fusion, scirun insight, csafe c-safe, PSE, software integration, problem solving environments, pse", } @Article{SCI:Ger2003b, author = "J.D. de St. Germain and A. Morris and S.G. Parker and A.D. Malony and S. Shende", title = "Performance Analysis Integration in the Uintah Software Development Cycle", journal = "International Journal of Parallel Programming", volume = "31", number = "1", pages = "35--53", year = "2003", keywords = "uintah", url = "https://publications.utah.edu/publications/Ger2003b/ijpp03.pdf", } @InProceedings{SCI:Goo2003a, author = "C.E. Goodyer and M. Berzins and P.K. Jimack and L.E. Scales", title = "Grid-Based Numerical Optimisation in a Problem Solving Environment", booktitle = "Proceedings of Second {UK} {E}-Science All-Hands Meeting", pages = "854--861", year = "2003", editor = "S.J. Cox", location = "Nottingham, {UK}", isbn = "1-904425-11-9", keywords = "computational pde pdes computational partial differential equations evaporation, pse grid computing, scientific computing, numerics", url = "https://publications.utah.edu/publications/goodyer03/GBJS03.pdf", } @TechReport{SCI:Gri2003a, author = "C.P. Gribble and S.G. Parker", title = "A Survey of the Itanium Architecture from a Programmer's Perspective", number = "UUSCI-2003-003", year = "2003", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "August", keywords = "survey, Itanium cluster, hardware", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2003-003.pdf", } @Article{SCI:Gui2003a, author = "J.E. Guilkey and J.A. Weiss", title = "Implicit Time Integration with the Material Point Method", journal = "International Journal for Numerical Methods in Engineering", volume = "57", pages = "1323--1338", year = "2003", url = "https://publications.utah.edu/publications/guilkey03/impmpm_FINAL.pdf", } @Article{SCI:Han2003a, author = "C.D. Hansen and C.R. Johnson", title = "Graphics Applications for Grid Computing", journal = j-CGA, pages = "20--21", year = "2003", month = "March/April", keywords = "collaborative remote visualization, parallel visualization", url = "https://publications.utah.edu/publications/hansen03/Graphics-Applications-Grid03.pdf", } @InProceedings{SCI:Her2003a, author = "W. Herrera-Jimenez and W. Correa and C.T. Silva and A. Baptista", title = "Visualizing Spatial and Temporal Variability in Coastal Observatories", booktitle = "Proceedings of the 14th {IEEE} Visualization 2003 ({VIS}'03)", pages = "75", year = "2003", isbn = "0-7695-2030-8", url = "https://publications.utah.edu/publications/herrera-jimenez03/vis2003.pdf", } @Article{SCI:Hog2003a, author = "R.E. Hogan and R.D. Bucholz and S. Joshi", title = "Hippocampal Deformation-Based Shape Analysis in Epilepsy and Unilateral Mesial Temporal Sclerosis", journal = "Epilepsia", volume = "44", number = "6", pages = "800--806", year = "2003", month = "June", } @InCollection{SCI:Hub2003a, author = "M.E. Hubbard and M. Berzins", title = "A Positivity Preserving Finite Element Method for Hyperbolic Partial Differential Equations", booktitle = "Computational Fluid Dynamics 2002", pages = "205--210", year = "2003", editor = "S. Armfield and P. Morgan and K. Srinivas", publisher = "Springer-Verlag", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, computational pde pdes computational partial differential equations", url = "https://publications.utah.edu/publications/hubbard03/Hubbard_ICCFD2003.pdf", } @InProceedings{SCI:Hwa2003a, author = "D. Hwang and O. Portniaguine and S. Nagarajan and C.R. Johnson and K. Sekihara", title = "Minimum Support {MEG} (Magnetoencephalography) Imaging: Study on Effects of Noise, Discretization, Depth, and Separation of Multiple Sources", booktitle = "World Congress on Medical Physics and Biomedical Engineering", year = "2003", month = "August", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, MEG, scientific computing, , meg", } @InProceedings{SCI:Hwa2003b, author = "D. Hwang and S. Nagarajan and O. Portniaguine and K. Sekihara", title = "Multiresolution {MEG} (Magnetoencephalography) Imaging By Adaptive Beamformer Scanning", booktitle = "25th Annual International Conference of the {IEEE} Engineering In Medicine And Biology Society", volume = "1", pages = "955--958", year = "2003", month = "September", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, ip image processing signal processing, MEG, scientific computing, Beamformer, meg, beamformer", } @Book{SCI:Iba2003a, author = "L. Ibanez and W. Schroeder and L. Ng and J. Cates", title = "The ITK Software Guide", year = "2003", publisher = "Kitware, Inc.", isbn = "1-930934-10-6", keywords = "ip image processing signal processing, segmentation, insight itk", url = "https://publications.utah.edu/publications/ibanez03/ItkSoftwareGuide.pdf", } @InProceedings{SCI:Iki2003a, author = "M. Ikits and C.D. Hansen and C.R. Johnson", title = "A Comprehensive Calibration and Registration Procedure for the Visual Haptic Workbench", booktitle = "Proceedings of the Ninth Eurographics Workshop on Virtual Environments", pages = "247--254", year = "2003", address = "Zurich, Switzerland,", month = "May", keywords = "vr virtual reality haptics, uve, Visualization, haptics, callibration, visualization", url = "https://publications.utah.edu/publications/ikits03/Ikits_EGVE_03.pdf", } @InProceedings{SCI:Iki2003b, author = "M. Ikits and J.D. Brederson and C.D. Hansen and C.R. Johnson", title = "A Constraint-Based Technique for Haptic Volume Exploration", booktitle = "Proceedings {IEEE} Visualization 2003", pages = "263--269", year = "2003", month = "October", location = "Seattle, WA", keywords = "tensor field methods, diffusion tensor imaging, vr virtual reality haptics, uve, scientific visualization, haptics", } @Article{SCI:Jeo2003a, author = "J. Jeon and A.E. Lefohn and G. A. Voth", title = "An Improved Polarflex Water Model", journal = "The Journal of Chemical Physics", volume = "118", number = "16", pages = "7504--7518", year = "2003", keywords = "cfd computational fluid dynamics, scientific computing", url = "https://publications.utah.edu/publications/jeon03/prePrintPF2.pdf", } @Article{SCI:Joh2003a, author = "C.R. Johnson and A.R. Sanderson", title = "A Next Step: Visualizing Errors and Uncertainty", journal = "{IEEE} Computer Graphics and Applications", volume = "23", number = "5", pages = "6--10", year = "2003", month = "September/October", keywords = "cfd computational fluid dynamics, scientific computing, error visualization", url = "https://publications.utah.edu/publications/crj03/g5visv-lo.pdf", } @Article{SCI:Jos2003a, author = "S. Joshi and P. Lorenzen and G. Gerig and E. Bullitt", title = "Structural and Radiometric Asymmetry in Brain Images", journal = "Med Image Anal", volume = "7", number = "2", pages = "155--170", year = "2003", month = "June", url = "https://publications.utah.edu/publications/joshi03/MEDIA03-Joshi-brain.pdf", } @InProceedings{SCI:Kin2003b, author = "G. Kindlmann and R.T. Whitaker and T. Tasdizen and T. M{\"o}ller", title = "Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications", booktitle = "Proceedings Visualization 2003", pages = "67", year = "2003", month = "October", keywords = "scalar field methods, transfer functions, curvature based, scientific visualization", url = "https://publications.utah.edu/publications/gk03/vis03kindlmann.pdf", } @Article{SCI:Kir2003a, author = "R.M. Kirby and G.E. Karniadakis", title = "De-Aliasing on Non-Uniform Grids: Algorithms and Applications", journal = "J. Comp. Phys.", volume = "191", number = "1", pages = "267--282", year = "2003", month = "October", keywords = "cfd computational fluid dynamics, dealiasing de-aliasing aliasing non-uniform grids, scientific computing", } @Book{SCI:Kir2003b, author = "G.E. Karniadakis and R.M. Kirby", title = "Parallel Scientific Computing in C++ and MPI: A Seamless Approach to Parallel Algorithms and their Implementation", pages = "628 pages", year = "2003", publisher = "Cambridge University Press", month = "June", isbn = "0521520800", keywords = "parallel visualization, parallel computing, programing", } @Article{SCI:Kir2003c, author = "R.M. Kirby and G.E. Karniadakis", title = "De-Aliasing on Non-Uniform Grids: Algorithms and Applications", journal = "Journal of Computational Physics", volume = "191", pages = "249--264", year = "2003", url = "https://publications.utah.edu/publications/kirby03/Kirby-5.pdf", } @Article{SCI:Kni2003a, author = "J.M. Kniss and S. Premoze and C.D. Hansen and P. Shirley and A. McPherson", title = "A Model for Volume Lighting and Modeling", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "9", number = "2", year = "2003", month = "April - June", url = "https://publications.utah.edu/publications/jmk03/kniss_tvcg03_volshade.pdf", } @InProceedings{SCI:Kni2003b, author = "J.M. Kniss and S. Premoze and M. Ikits and A.E. Lefohn and C.D. Hansen and E. Praun", title = "Gaussian Transfer Functions for Multi-Field Volume Visualization", booktitle = "{IEEE} Visualization 2003", pages = "497--504", year = "2003", month = "October", location = "Seattle, Wa.", keywords = "scalar field methods, volume rendering, transfer functions, simian, scientific visualization, gaussian", url = "https://publications.utah.edu/publications/jmk03/vis03_kniss.pdf", } @TechReport{SCI:Kni2003c, author = "J.M. Kniss and S. Premoze and M. Ikits and A.E. Lefohn and C.D. Hansen", title = "Closed Form Solution to the Volume Rendering Integral with Gaussian Transfer Functions", number = "UUCS-03-013", year = "2003", institution = "University of Utah School of Computing", type = "Technical Report", keywords = "scalar field methods, volume rendering, transfer functions, Level-set methods, level-set methods", url = "https://publications.utah.edu/publications/jmk03/UUCS-03-013.pdf", } @InProceedings{SCI:Lam2003a, author = "E. Lamar and V. Pascucci", title = "A Multi-Layered Image Cache For Scientific Visualization", booktitle = "Proceedings of {IEEE} Symposium on Parallel and Large-Data Visualization and Graphics", pages = "61--68", year = "2003", month = "October", note = "UCRL-JC-152963", } @InProceedings{SCI:Lan2003a, author = "M. Langbein and G. Scheuermann and X. Tricoche", title = "An Efficient Point Location Method for Visualization in Large Unstructured Grids", booktitle = "Proceedings of Vision, Modeling, and Visualization 2003", pages = "27--36", year = "2003", publisher = "IOS Press", url = "https://publications.utah.edu/publications/langbein03/location.pdf", } @Article{SCI:Laz2003a, author = "M. Lazar and D.M. Weinstein and J.S. Tsuruda and K.M. Hasan and K. Arfanakis and E. Meyer and B. Badie and H.A. Rowley and V. Haughton and A. Field and A.L. Alexander", title = "White Matter Tractography Using Diffusion Tensor Deflection", journal = "Human Brain Mapping", volume = "18", pages = "306--321", year = "2003", keywords = "tensor field methods, diffusion tensor imaging, Scientific visualization", url = "https://publications.utah.edu/publications/lazar03/lazar.hbm.03.pdf", } @InProceedings{SCI:Lef2003a, author = "A.E. Lefohn and J.M. Kniss and C.D. Hansen and R.T. Whitaker", title = "Interactive Deformation and Visualization of Level Set Surfaces Using Graphics Hardware", booktitle = "{IEEE} Visualization 2003", pages = "75--82", year = "2003", month = "October", location = "Seattle, Wa.", keywords = "ip image processing signal processing, segmentation, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/lefohn03/visLevelSetPaper.pdf", } @TechReport{SCI:Lef2003b, author = "A.E. Lefohn and J. Cates and R.T. Whitaker", title = "Interactive, {GPU}-Based Level Sets for 3D Brain Tumor Segmentation", number = "UUCS-03-004", year = "2003", institution = "University of Utah School of Computing", type = "Technical Report", keywords = "ip image processing signal processing, segmentation, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/lefohn03/UUCS-03-004.pdf", } @Article{SCI:Lef2003d, author = "A.E. Lefohn and R.T. Caruso and E. Reinhard and B. Budge and P. Shirley", title = "An Ocularist's Approach to Human Iris Synthesis", journal = "{IEEE} Computer Graphics and Applications", volume = "23", number = "6", pages = "70--75", year = "2003", keywords = "human iris rendering, photorealistic rendering,", url = "https://publications.utah.edu/publications/lefohn03/irisSynthesis.pdf", } @TechReport{SCI:Lef2003e, author = "A.E. Lefohn and J.M. Kniss and C.D. Hansen and R.T. Whitaker", title = "Interactive Deformation and Visualization of Level Set Surfaces Using Graphics Hardware", number = "UUCS-03-005", year = "2003", institution = "University of Utah School of Computing", type = "Technical Report", keywords = "ip image processing signal processing, segmentation, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/lefohn03/UUCS-03-005.pdf", } @Article{SCI:Lef2003f, author = "A.E. Lefohn and J. Cates and R.T. Whitaker", title = "Interactive, {GPU}-Based Level Sets for 3D Segmentation", journal = "Medical Image Computing and Computer Assisted Intervention ({MICCAI})", pages = "564--572", year = "2003", keywords = "ip image processing signal processing, segmentation, insight itk, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/lefohn03/gpuTumorSeg.pdf", } @Article{SCI:Leu2003a, author = "C.H. Leung and M. Berzins", title = "A Computational Model for Organism Growth based on Surface Mesh Generation", journal = "Journal of Computational Physics", volume = "188", number = "1", pages = "75--99", year = "2003", url = "https://publications.utah.edu/publications/leung03/JCPmgen.pdf", } @InProceedings{SCI:Li2003a, author = "G. Li and U.D. Bordoloi and H. Shen", title = "Chameleon: An Interactive Texture-based Rendering Framework for Visualizing Three-dimensional Vector Fields", booktitle = "Proceedings of {IEEE} Visualization 2003", pages = "32", year = "2003", month = "Oct", keywords = "scalar field methods, vector field methods, tensor field methods, atmospherics weather meterology, scientific visualization", url = "https://publications.utah.edu/publications/li03/chameleon2003.pdf", } @TechReport{SCI:Liv2003a, author = "Y. Livnat and C.D. Hansen", title = "Dynamic View Dependent Isosurface Extraction", number = "UUSCI-2003-004", year = "2003", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scalar field methods, isosurface extraction", url = "https://publications.utah.edu/publications/yarden03/UUSCI-2003-004.pdf", } @InProceedings{SCI:Lor2003a, author = "P. Lorenzen and S. Joshi", title = "High-Dimensional Multi-modal Image Registration", booktitle = "Proceedings of the Workshop on Biomedical Image Registration", pages = "234--243", year = "2003", url = "https://publications.utah.edu/publications/lorenzen03/WBIR03_Lorenzen.pdf", } @Article{SCI:Lu2003a, author = "A. Lu and C.J. Morris and J. Taylor and D.S. Ebert and C.D. Hansen and P. Rheingans and M. Hartner", title = "Illustrative Interactive Stipple Rendering", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "9", number = "2", pages = "127--138", year = "2003", month = "April", keywords = "scalar field methods, scientific visualization", url = "https://publications.utah.edu/publications/lu03/Lu_TVCG2003.pdf", } @Article{SCI:Lu2003b, author = "C. Lu and S. Pizer and S. Joshi", title = "A Markov Random Field Approach to Multi-scale Shape Analysis", journal = "Scale Space Methods in Computer Vision", pages = "416--431", year = "2003", editor = "LD Griffin and M Lillholm", url = "https://publications.utah.edu/publications/lu03/ScaleSpace03_Lu_shape.pdf", } @Article{SCI:Luc2003a, author = "D. Lucor and D. Xiu and C.-H. Su and G.E. Karniadakis", title = "Predictability and Uncertainty in CFD", journal = "International Journal for Numerical Methods in Fluids", volume = "43", number = "5", pages = "483--505", year = "2003", keywords = "computational fluid dynamics, polynomial chaos, Wiener–Hermite functionals, incompressible flows", url = "https://publications.utah.edu/publications/lucor03/Lucor_IJNMF2003.pdf", } @InProceedings{SCI:Max2003a, author = "N. Max and P. Williams and C.T. Silva and R. Cook", title = "Volume Rendering for Curvilinear and Unstructured Grids", booktitle = "Proceedings of Computer Graphics International, 2003", pages = "210--215", year = "2003", isbn = "0-7695-1946-6", issn = "1530-1052", url = "https://publications.utah.edu/publications/max03/cgi2003.pdf", } @InProceedings{SCI:Nub2003a, author = "C. Nuber and E.C. LaMar and V. Pascucci and B. Hamann and K.I. Joy", title = "Using Graphs for Fast Error Term Approximation of Time-varying Datasets", booktitle = "Proceedings of Eurographics VisSym'03 (Data Visualization 2003)", year = "2003", editor = "Georges-Pierre Bonneau AND Stefanie Hahmann AND Charles D. Hansen", publisher = "Association for Computing Machinery", address = "New York, New York", note = "UCRL-JC-151965", } @Book{SCI:Pao2003a, author = "A. Paoluzzi and V. Pascucci and M. Vicentino and C. Baldazzi and S. Protuesi", title = "Geometric Programming for Computer Aided Design", year = "2003", publisher = "John Wiley & Sons", month = "June", } @Article{SCI:Par2003b, author = "S.G. Parker", title = "{C-SAFE} Uses Linux {HPCC} in Fire Research", journal = "Syllabus, Technology for Higher Education", volume = "16", number = "7", year = "2003", month = "Feburary", keywords = "uintah, csafe c-safe, pse, problem solving environments", url = "https://publications.utah.edu/publications/Par2003b/2003_Parker_Linux_HPCC_in_Fire_Research.pdf", } @Article{SCI:Pas2003a, author = "V. Pascucci and K. Cole-McLaughlin", title = "Parallel Computation of the Topology of Level Sets", journal = "Algorithmica", volume = "38", number = "1", pages = "249--268", year = "2003", month = "October", } @InProceedings{SCI:Pas2003b, author = "V. Pascucci and D.E. Laney and R. Frank and G. Scorzelli and L. Linsen and B. Hamann and F. Gygi", title = "Real-Time Monitoring of Large Scientific Simulations", booktitle = "Proceedings of the 18-th annual ACM Symposium on Applied Computing", pages = "194--198", year = "2003", month = "March", location = "Melbourne, Florida", note = "UCRL-JC-151094", } @InCollection{SCI:Pas2003g, author = "V. Pascucci and R. J. Frank", title = "Hierarchical Indexing for Out-of-Core Access to Multi-Resolution Data", booktitle = "Mathematics and Visualization", pages = "225--241", year = "2003", editor = "G.Farin and B. Hamann and H. Hagen", publisher = "Springer-Verlag", note = "UCRL-JC-140581", } @Article{SCI:Piz2003a, author = "S.M. Pizer and G. Gerig and S. Joshi and S. Aylward", title = "Multiscale Medial Shape-Based Analysis of Image Objects", journal = "Proceedings of the IEEE", volume = "91", number = "10", pages = "1670--1679", year = "2003", editor = "C. Roux and J.K. Udupa", publisher = "IEEE", month = "October", url = "https://publications.utah.edu/publications/Piz2003a/IEEEproc03_Pizer_multimed.pdf", } @Article{SCI:Piz2003b, author = "S.M. Pizer and P.T. Fletcher and Y. Fridman and D.S. Fritsch and A.G. Gash and J.M. Glotzer and S. Joshi and A. Thall and G. Tracton and P. Yushkevich and E.L. Chaney", title = "Deformable {M-Reps} for {3D} Medical Image Segmentation", journal = "International Journal of Computer Vision - Special {UNC-MIDAG} issue", volume = "55", number = "2", pages = "85--106", year = "2003", editor = "O Faugeras and K Ikeuchi and J Ponce", publisher = "Kluwer Academic", month = "November-December", url = "https://publications.utah.edu/publications/pizer03/IJCV03-Pizer-mreps.pdf", } @Article{SCI:Piz2003c, author = "S.M. Pizer and P.T. Fletcher and A. Thall and M. Styner and G. Gerig and S. Joshi", title = "Object Models in Multiscale Intrinsic Coordinates via M-reps", journal = "Image and Vision Computing, Special Issue on Generative Model-based Vision", volume = "21", number = "1", pages = "5--15", year = "2003", month = "January", url = "https://publications.utah.edu/publications/pizer03/GMBV02_Pizer.pdf", } @Article{SCI:Por2003a, author = "O. Portniaguine and C. Bonifasi and E. DiBella and R.T. Whitaker", title = "Inverse Methods for Reduced K-Space Acquisition", journal = "International Society for Magnetic Resonance in Medicine ({ISMRM})", year = "2003", note = "abstract.", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scientific computing", } @InProceedings{SCI:Pre2003a, author = "S. Premoze and T. Tasdizen and J. Bigler and A.E. Lefohn and R. T. Whitaker", title = "Particle-Based Simulation of Fluids", booktitle = "Eurographics", pages = "401--410", year = "2003", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization", url = "https://publications.utah.edu/publications/premoze03/ParticleFluidsHiRes.pdf", } @InProceedings{SCI:Ram2003a, author = "S.D. Ramsey and M. Bertram and C.D. Hansen", title = "Simplification of Arbitrary Polyhedral Meshes", booktitle = "{IASTED} Computer Graphics and Imaging ({CGIM} 2003)", pages = "117--222", year = "2003", location = "Honolulu", url = "https://publications.utah.edu/publications/ramsey03/IASTED03_ramsey.pdf", } @Article{SCI:Ram2003b, author = "M. Ramanath and J. Freire and J. Haritsa and P. Roy", title = "Searching for Efficient XML-to-Relational Mappings", journal = "Lecture Notes in Computer Science", volume = "2824", pages = "19--36", year = "2003", series = "Lecture Notes in Computer Science (LNCS)", isbn = "978-3-540-20055-0", url = "https://publications.utah.edu/publications/Ram2003b/Ramanath_LNCS2003.pdf", } @InProceedings{SCI:Ril2003a, author = "K. Riley and D. Ebert and C.D. Hansen and J. Levit", title = "Visually Accurate Multi-Field Weather Visualization", booktitle = "{IEEE} Visualization 2003", pages = "279--286", year = "2003", location = "Seattle", keywords = "atmospherics weather meterology", url = "https://publications.utah.edu/publications/riley03/vis03_riley.pdf", } @InProceedings{SCI:Sam2003a, author = "A.A. Samsonov and E.G. Kholmovski and C.R. Johnson", title = "Image Reconstruction from Sensitivity Encoded {MRI} Data Using Extrapolated Iterations of Parallel Projections Onto Convex Sets", booktitle = "{SPIE} Medical Imaging", volume = "5032", pages = "1829--1838", year = "2003", keywords = "NCRR, ip image processing signal processing, ncrr, scientific computing, bisti", url = "https://publications.utah.edu/publications/samsonov03/spie2003.pdf", } @InProceedings{SCI:Sam2003b, author = "A.A. Samsonov and E.G. Kholmovski and C.R. Johnson", title = "Determination of the Sampling Density Compensation Function Using a Point Spread Function Modeling Approach and Gridding Approximation", booktitle = "Proceedings of 11th Annual Meeting of the International Society for Magnetic Resonance in Medicine ({ISMRM})", pages = "477", year = "2003", location = "Toronto", keywords = "ip image processing signal processing, neuro brain, ncrr, scientific computing, bisti", url = "https://publications.utah.edu/publications/samsonov03/ismrm03_abs1.pdf", } @InProceedings{SCI:Sam2003c, author = "A.A. Samsonov and E.G. Kholmovski and C.R. Johnson", title = "A Modified {POCSENSE} Technique for Accelerated Iterative Reconstruction from Sensitivity Encoded {MRI} Data", booktitle = "Proceedings of 11th Annual Meeting of the International Society for Magnetic Resonance in Medicine ({ISMRM})", pages = "477", year = "2003", location = "Toronto", keywords = "ip image processing signal processing, neuro brain, ncrr, scientific computing, bisti", url = "https://publications.utah.edu/publications/samsonov03/ismrm03_abs3.pdf", } @TechReport{SCI:San2003a, author = "A.R. Sanderson and C.R. Johnson", title = "Display of Vector Fields Using a Reaction-Diffusion Model", number = "UUSCI-2003-002", year = "2003", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "June", keywords = "fusion tokamak nimrod, vector field methods, scirun, scirun fusion, fusion tokamak, scientific visualization", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2003-002.pdf", } @InProceedings{SCI:Sch2003a, author = "J. Schpok and J. Simons and D.S. Ebert and C.D. Hansen", title = "A Real-Time Cloud Modeling, Rendering, and Animation System", booktitle = "{ACM} Symposium on Computer Animation", pages = "160--166", year = "2003", location = "San Diego", url = "https://publications.utah.edu/publications/schpok03/scaclouds.pdf", } @InProceedings{SCI:Ser2003a, author = "Y. Serinagaoglu and D.H. Brooks and R.S. MacLeod", title = "Prior Model Selection for Bayesian Inverse Electrocardiography", booktitle = "Proceedings of the NFSI Conference 2003", year = "2003", location = "Chieti, Italy", keywords = "forward problems inverse problems forward simulation inverse solutions, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/yesim03/ysd_nfsi_2003.pdf", } @InProceedings{SCI:Ser2003b, author = "Y. Serinagaoglu and R.S. MacLeod and D.H. Brooks", title = "A Bayesian Approach to Inclusion and Performance Analysis of Using Extra Information in Bioelectric Inverse Problems", booktitle = "Proceedings of the {IEEE} International Conference on Image Processing", year = "2003", keywords = "forward problems inverse problems forward simulation inverse solutions, ncrr", url = "https://publications.utah.edu/publications/yesim03/ysd_icip_2003.pdf", } @Article{SCI:Ser2003c, author = "Y. Serinagaoglu and D.H. Brooks and R.S. MacLeod", title = "Combining Numerical and Physiological Constraints in Inverse Electrocardiography", journal = j-IJBEM, volume = "5", number = "1", pages = "215--217", year = "2003", keywords = "map3d, cardiac heart, ncrr, scientific visualization, forward problems inverse problems forward simulation inverse solutions", url = "https://publications.utah.edu/publications/yesim03/ICE03-yesim.pdf", } @Article{SCI:Sti2003a, author = "J.G. Stinstra and B. Hopenfeld and R.S. MacLeod", title = "A Model for the Passive Cardiac Conductivity", journal = "Int. J. Bioelectromag.", volume = "5", number = "1", pages = "185--186", year = "2003", keywords = "cardiac heart, ncrr", url = "https://publications.utah.edu/publications/stinstra03/ICE03-Jeroen.pdf", } @Article{SCI:Sty2003a, author = "M. Styner and G. Gerig and S. Pizer and S. Joshi", title = "Automatic and Robust Computation of {3D} Medial Models Incorporating Object Variability", journal = "International Journal of Computer Vision - Special {UNC-MIDAG} issue", volume = "55", number = "2", pages = "107--122", year = "2003", editor = "O Faugeras and K Ikeuchi and J Ponce", publisher = "Kluwer Academic", month = "November-December", url = "https://publications.utah.edu/publications/styner03/IJCV03-Styner_shape.pdf", } @Article{SCI:Tas2003b, author = "T. Tasdizen and R.T. Whitaker and P. Burchard and S. Osher", title = "Geometric Surface Processing via Normal Maps", journal = "{ACM} Transactions on Graphics", year = "2003", keywords = "ip image processing signal processing, surface processing, imaging", url = "https://publications.utah.edu/publications/tolga03/tasdizen.pdf", } @InProceedings{SCI:Tas2003c, author = "T. Tasdizen and R.T. Whitaker", title = "Cramer-Rao Bounds for Nonparametric Surface Reconstruction from Range Data", booktitle = "Proceedings of Fourth International Conference on 3-D Imaging and Modeling", pages = "70--77", year = "2003", month = "October", keywords = "ip image processing signal processing, surface processing, imaging", url = "https://publications.utah.edu/publications/tolga03/bounds.pdf", } @InProceedings{SCI:Tas2003d, author = "T. Tasdizen and R.T. Whitaker", title = "Anisotropic diffusion of surface normals for feature preserving surface reconstruction", booktitle = "Proceedings of Fourth International Conferenceon 3-D Imaging and Modeling", pages = "353--360", year = "2003", month = "October", keywords = "ip image processing signal processing, surface processing, imaging", url = "https://publications.utah.edu/publications/tolga03/reconst.pdf", } @InProceedings{SCI:Tas2003e, author = "T. Tasdizen and R.T. Whitaker", title = "Feature preserving variational smoothing of terrain data", booktitle = "{IEEE} Workshop on Variational, Geometric and Level Set Methods in Computer Vision", year = "2003", month = "October", keywords = "ip image processing signal processing, surface processing, geophysics geology, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/tolga03/terrain.pdf", } @Article{SCI:Tri2003a, author = "X. Tricoche and G. Scheuermann", title = "Topology Simplification of Symmetric, Second Order 2D Tensor Fields", journal = "Geometric Modeling Methods in Scientific Visualization", pages = "171--184", year = "2003", publisher = "Springer, Berlin", url = "https://publications.utah.edu/publications/tricoche03/simple.pdf", } @Article{SCI:Uit2003a, author = "R. Van Uitert and D. Weinstein and C.R. Johnson", title = "Volume Currents in Forward and Inverse Magnetoencephalographic Simulations Using Realistic Head Models", journal = "Annals of Biomedical Engineering", volume = "31", pages = "21--31", year = "2003", keywords = "SCIRun, forward problems inverse problems forward simulation inverse solutions finite elements, inverse meg, scirun, neuro brain, ncrr, scientific computing", url = "https://publications.utah.edu/publications/vanuiter03/ABE00021.pdf", } @InProceedings{SCI:Uit2003b, author = "R. Van Uitert and C.R. Johnson", title = "Influence of Brain Conductivity on Magnetoencephalographic Simulations in Realistic Head Models", booktitle = "The 25th Annual International Conference of the {IEEE} Engineering In Medicine And Biology Society", volume = "3", pages = "2136--2139", year = "2003", month = "September", keywords = "{SCIR}un, forward problems inverse problems forward simulation inverse solutions finite elements, inverse meg, scirun, biopse, scientific computing, {scir}un", url = "https://publications.utah.edu/publications/vanuiter03/EMBS.pdf", } @Article{SCI:Wei2003b, author = "D.M. Weinstein and J.V. Tranquillo and C.S. Henriquez and C.R. Johnson", title = "Bio{PSE} Case Study: Modeling, Simulation, and Visualization of Three Dimensional Mouse Heart Propagation", journal = "International Journal of Bioelectromagnetism", volume = "5", number = "1", pages = "314--315", year = "2003", keywords = "Bio{PSE}, {CARDIOWAVE}, bio{pse}, {cardiowave}, ncrr,", url = "https://publications.utah.edu/publications/dmw03/ice2003.pdf", } @InProceedings{SCI:Wym2003a, author = "C. Wyman and C.D. Hansen", title = "Penumbra Maps: Approximate Soft Shadows in Real-Time", booktitle = "Eurographics Rendering Symposium", pages = "202--207", year = "2003", location = "Belguim", url = "https://publications.utah.edu/publications/wyman03/PenumbraMaps.pdf", } @Article{SCI:Xiu2003a, author = "D. Xiu and G.E. Karniadakis", title = "Modeling Uncertainty in Flow Simulations via Generalized Polynomial Chaos", journal = "Journal of Computational Physics", volume = "187", number = "1", pages = "137--167", year = "2003", keywords = "Polynomial chaos, Uncertainty, Fluids, Stochastic modeling", url = "https://publications.utah.edu/publications/xiu03/Xiu_JCP2003.pdf", } @Article{SCI:Xiu2003b, author = "D. Xiu and G.E. Karniadakis", title = "A New Stochastic Approach to Transient Heat Conduction Modeling with Uncertainty", journal = "International Journal of Heat and Mass Transfer", volume = "46", number = "24", pages = "4681--4693", year = "2003", keywords = "Uncertainty, Stochastic modeling, Polynomial chaos, Transient heat conduction, Random medium", url = "https://publications.utah.edu/publications/xiu03/Xiu_IJHMT2003.pdf", } @Article{SCI:Yus2003a, author = "P. Yushkevich and S. Joshi and S.M. Pizer and J.G. Csernansky and L. Wang", title = "Feature Selection for Shape-Based Classification of Biological Objects", journal = "Inf Process Med Imaging", volume = "18", pages = "114--125", year = "2003", month = "July", url = "https://publications.utah.edu/publications/yushkevich03/IPMI03_Yushkevich.pdf", } @Article{SCI:Yus2003b, author = "P. Yushkevich and P.T. Fletcher and S. Joshi and A. Thall and S.M. Pizer", title = "Continuous Medial Representations for Geometric Object Modeling in 2D and 3D", journal = "Image and Vision Computing, Special Issue on Generative Model-based Vision", volume = "21", number = "1", pages = "17--27", year = "2003", url = "https://publications.utah.edu/publications/yushkevich03/GMBV02-Yushkevich.pdf", } @TechReport{SCI:Zyp2003a, author = "K. Zyp", title = "The Transfer Operator for Multigrid on Inverse Bioelectric Field Problems", number = "UUSCI-2003-001", year = "2003", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "May", note = "Masters thesis", keywords = "computational pde pdes computational partial differential equations evaporation, ncrr, scientific computing", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-2003-001.pdf", } @InProceedings{SCI:Ben2002a, author = "M. Benedikt and J. Freire and P. Godefroid", title = "VeriWeb: Automatically Testing Dynamic Web Sites", booktitle = "In Proceedings of 11th International World Wide Web Conference 2002", year = "2002", url = "https://publications.utah.edu/publications/benedikt02/veriweb-www2002.pdf", } @InProceedings{SCI:Boh2002a, author = "P. Bohannon and J. Freire and J. Haritsa and M. Ramanath and P. Roy and J. Simeon", title = "LegoDB: Customizing Relational Storage for XML Documents", booktitle = "Proceedings of the 28th international conference on Very Large Data Bases", pages = "1091--1094", year = "2002", location = "Hong Kong, China", keywords = "xml, relational storage, legodb", url = "https://publications.utah.edu/publications/bohannon02/Bohannon_LegoDB2002.pdf", } @Article{SCI:Boh2002b, author = "P. Bohannon and J. Freire and P. Roy and J. Sim{\'e}on", title = "From XML Schema to Relations: A Cost-Based Approach to XML Storage", journal = "International Conference on Data Engineering", pages = "64", year = "2002", publisher = "IEEE Computer Society", address = "Los Alamitos, CA, USA", isbn = "0-7695-1531-2", url = "https://publications.utah.edu/publications/bohannon02/Bohannon_icde2002.pdf", } @Article{SCI:Che2002a, author = "Z. Chen and S. Pizer and E. Chaney and S. Joshi", title = "Medical Image Synthesis via Monte Carlo Simulation", journal = "Medical Image Computing and Computer-Assisted Intervention (MICCAI)", pages = "347--354", year = "2002", editor = "T Dohi and R Kikinis", url = "https://publications.utah.edu/publications/chen02/MICCAI02-chenzj.pdf", } @Article{SCI:Dur2002a, author = "L.J.K. Durbeck and M. Berzins", title = "Unstructured Tetrahedral Mesh Quality Analysis Using an Interactive Haptic and Visual Interface", journal = j-CVS, volume = "5", number = "3", pages = "179--192", year = "2002", publisher = "Springer-Verlag", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, evaporation, atmospherics weather meterology, scientific computing", url = "https://publications.utah.edu/publications/ldurbeck02/ldmb.pdf", } @InProceedings{SCI:Fle2002a, author = "P.T. Fletcher and S.M. Pizer and G. Gash and S. Joshi", title = "Deformable {M}-rep segmentation of object complexes", booktitle = "Proceedings of the {IEEE} International Symposium on Biomedical Imaging ({ISBI})", pages = "26--29", year = "2002", url = "https://publications.utah.edu/publications/fletcher02/ISBI02-fletcher-defmrep.pdf", } @InProceedings{SCI:Fre2002a, author = "J. Freire and J. Haritsa and M. Ramanath and P. Roy and J. Simeon", title = "StatiX: Making XML Count", booktitle = "Proceedings of the 2002 ACM SIGMOD International Conference on Management of Data", pages = "181--191", year = "2002", keywords = "xml", url = "https://publications.utah.edu/publications/freire02/Freire_SIGMOD2002.pdf", } @InProceedings{SCI:Ger2002a, author = "J.D. de St. Germain and A. Morris and S.G. Parker and A.D. Malony and S. Shende", title = "Integrating Performance Analysis in the Uintah Software Development Cycle", booktitle = c-ISHPC2002, pages = "190--206", year = "2002", month = "May 15-17", keywords = "scirun, uintah, csafe, csafe c-safe, problem solving environments, pse", url = "https://publications.utah.edu/publications/dav02/ishpc2002.pdf", } @InProceedings{SCI:Goo2002a, author = "C.E. Goodyer and M. Berzins", title = "Eclipse and Ellipse: {PSE}s for {EHL} Solutions using {IRIS} Explorer and {SCIR}un", booktitle = c-ICCS2002, volume = "2329", pages = "523--532", year = "2002", editor = "P.M.A. Sloot and C.J.K. Tan and J.J. Dongarra and A.G. Hoekstra", publisher = "Springer Berlin", location = "Amsterdam, The Netherlands", url = "https://publications.utah.edu/publications/goodyer02/2002EclipseEllipse.pdf", } @InProceedings{SCI:Goo2002b, author = "C.E. Goodyer and J. Wood and M. Berzins", title = "A Parallel Grid Based {PSE} for {EHL} Problems", booktitle = c-PARA2002, volume = "2367", pages = "521--530", year = "2002", editor = "J. Fagerholm and J. Haatja and J. Jarvinen and M. Lyly and P. Raback and V. Savolainen", publisher = "Springer Lecture Notes in Computer Science", location = "Espoo, Finland", keywords = "pse grid computing", url = "https://publications.utah.edu/publications/goodyer02/CEGJWMB02.pdf", } @Article{SCI:Gre2002a, author = "J. Gregor and R.T. Whitaker", title = "Indoor Scene Reconstruction for Sets of Noisy Range Images", journal = "Graphical Models", volume = "63", number = "5", pages = "304--332", year = "2002", month = "September", keywords = "ip image processing signal processing, surface processing, imaging", } @Article{SCI:Gre2002b, author = "J. Gregor and S.S. Gleason and M.J. Paulus and J. Cates", title = "Fast Feldkamp Reconstruction Based on Focus of Attention and Distributed Computing", journal = j-IJIST, volume = "12", number = "6", pages = "229--234", year = "2002", } @InProceedings{SCI:Gre2002c, author = "B. Gregoski and M. Duchaineau and P. Lindstrom and V. Pascucci and K. Joy", title = "Interactive View-Dependent Rendering of Large Isosurfaces", booktitle = "Proceedings of IEEE Conference on Visualization ({VIS}-02)", pages = "475--482", year = "2002", month = "October", location = "Boston, MA", note = "UCRL-JC-146819", } @Article{SCI:Han2002a, author = "K.A. Hansen and J.A. Weiss and J.K. Barton", title = "Recruitment of Tendon Crimp with Applied Tensile Strain", journal = "Journal of Biomechanical Engineering", volume = "124", pages = "72--77", year = "2002", url = "https://publications.utah.edu/publications/hansen02/octjbme.pdf", } @Article{SCI:Jim2002a, author = "P.K. Jimack and R. Mahmood and M.A. Walkley and M. Berzins", title = "A Multilevel Approach for Obtaining Locally Optimal Finite Element Meshes", journal = j-AES, volume = "33", pages = "403--415", year = "2002", keywords = "finite elements", url = "https://publications.utah.edu/publications/jimack02/JMWB00.pdf", } @Article{SCI:Joh2002a, author = "C.R. Johnson and S.G. Parker and D. Weinstein and S. Heffernan", title = "Component-Based Problem Solving Environments for Large-Scale Scientific Computing", journal = j-CCPE, volume = "14", pages = "1337--1349", year = "2002", keywords = "ncrr, SCIRun, scirun", url = "https://publications.utah.edu/publications/crj02/grids01.pdf", } @Article{SCI:Jos2002a, author = "S. Joshi and S. Pizer and P.T. Fletcher and P. Yushkevich and A. Thall and J. Marron", title = "Multiscale Deformable Model Segmentation and Statistical Shape Analysis Using Medial Descriptions", journal = "IEEE Trans Med Imaging", volume = "21", number = "5", pages = "538--550", year = "2002", month = "May", url = "https://publications.utah.edu/publications/joshi02/TMI02-Joshi-mreps.pdf", } @InProceedings{SCI:Kho2002a, author = "E.G. Kholmovski and A.A. Samsonov and D.L. Parker", title = "{POCSENSE}: POCS-based method for reconstruction from sensitivity-encoded data", booktitle = c-ISMRM2002, pages = "194", year = "2002", location = "Honolulu", keywords = "NCRR, ip image processing signal processing, ncrr, imaging, bisti", url = "https://publications.utah.edu/publications/samsonov02/ismrm02_abs4.pdf", } @Article{SCI:Kho2002b, author = "E.G. Kholmovski and A.A. Samsonov and D.L. Parker", title = "Motion Artifact Reduction Technique for Dual Contrast FSE Imaging", journal = "Magnetic Resonance Imaging", volume = "20", number = "6", pages = "455--462", year = "2002", keywords = "NCRR, ip image processing signal processing, ncrr, imaging", url = "https://publications.utah.edu/publications/samsonov02/mri02_motion.pdf", } @Article{SCI:Kir2002a, author = "R.M. Kirby and G.E. Karniadakis", title = "Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES)", journal = j-JFE, volume = "124", number = "4", pages = "886-891", year = "2002", keywords = "cfd computational fluid dynamics, computational pde pdes computational partial differential equations evaporation, scientific computing", } @Article{SCI:Kir2002b, author = "R.M. Kirby and G.E. Karniadakis", title = "Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES)", journal = "Journal of Fluids Engineering", volume = "124", number = "4", pages = "886--891", year = "2002", } @Article{SCI:Kni2002a, author = "J.M. Kniss and G. Kindlmann and C.D. Hansen", title = "Multidimensional Transfer Functions for Interactive Volume Rendering", journal = j-TVCG, volume = "8", number = "3", pages = "270--285", year = "2002", keywords = "scalar field methods, volume rendering, transfer functions, simian, scientific visualization", url = "https://publications.utah.edu/publications/jmk02/kniss_tvcg02-small.pdf", } @InProceedings{SCI:Kni2002b, author = "J.M. Kniss and C.D. Hansen and M. Grenier and T. Robinson", title = "Volume Rendering Multivariate Data to Visualize Meteorological Simulations: A Case Study", booktitle = c-VISSYM2002, year = "2002", keywords = "scalar field methods, volume rendering, transfer functions, simian, atmospherics weather meterology, scientific visualization", url = "https://publications.utah.edu/publications/jmk02/jmk_vissym02.pdf", } @InProceedings{SCI:Kni2002c, author = "J.M. Kniss and S. Premoze and C.D. Hansen and D. Ebert", title = "Interactive Translucent Volume Rendering and Procedural Modeling", booktitle = c-VIS2002, year = "2002", keywords = "scalar field methods, volume rendering, transfer functions, simian, scientific visualization", url = "https://publications.utah.edu/publications/jmk02/kniss_volumeshading02.pdf", } @InProceedings{SCI:Lag2002a, author = "I. Lagzi and A.S. Tomlin and T. Turanyi and L. Haszpra and R. Meszaros and M. Berzins", title = "Modelling Tropospheric Ozone Formation in Hungary Using an Adaptive Gridding Method", booktitle = "Proceedings from the {EUROTRAC-2} Symposium 2002", year = "2002", editor = "Garmisch-Partenkirchenand P.M. Midgley and M. Reuters", keywords = "atmospherics, ozone, environment, pollution", url = "https://publications.utah.edu/publications/lagzi02/Lagzi_Eurotrac2_2002.pdf", } @InProceedings{SCI:Lag2002b, author = "I. Lagzi and A.S. Tomlin and T. Turanyi and L. Haszpra and R. Meszaros and M. Berzins", title = "Modeling Photochemical Air Pollution in Hungary Using an Adaptive Grid Model", booktitle = "Air Pollution modeling and Simulation - Proc.2nd International Conference on Air Pollution Modeling and Simulation (APMS'2001)", pages = "264--273", year = "2002", month = "april", isbn = "3540425152, 9783540425151", keywords = "atmospherics, pollution, environment, adaptive grid modeling", url = "https://publications.utah.edu/publications/lagzi02/48_Lagzi_APMS_2002.PDF", } @TechReport{SCI:Lef2002a, author = "A.E. Lefohn and R.T. Whitaker", title = "A {GPU}-Based, Three-Dimensional Level Set Solver with Curvature Flow", number = "UUCS-02-017", year = "2002", institution = "University of Utah School of Computing", type = "Technical Report", keywords = "ip image processing signal processing, segmentation, imaging, level set, level-set methods, level-sets", url = "https://publications.utah.edu/publications/lefohn02/UUCS-02-017.pdf", } @Article{SCI:Lin2002a, author = "P. Lindstrom and V. Pascucci", title = "Terrain Simplification Simplified: A General Framework for View-Dependent Out-of-Core Visualization", journal = "IEEE Transactions on Visualization and Computer Graphics", volume = "8", number = "3", pages = "239--254", year = "2002", month = "July-September", note = "UCRL-JC-147847", } @InProceedings{SCI:Lin2002b, author = "L. Linsen and V. Pascucci and M.A. Duchaineau and B. Hamann and K.I. Joy", title = "Hierarchical Representation of Time-varying Volume Data with 4th-root-of-2 Subdivision and Quadrilinear {B}-spline Wavelets", booktitle = "Proceedings of Tenth Pacific Conference on Computer Graphics and Applications", pages = "346--355", year = "2002", location = "Beijing, China", note = "UCRL-JC-151063", } @TechReport{SCI:Liv2002b, author = "Y. Livnat and X. Cavin and C.D. Hansen", title = "{PHASE}: Progressive Hardware Assisted IsoSurface Extraction Framework", number = "UUSCI-2002-001", year = "2002", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "isosurface extraction, scalar field methods", url = "https://publications.utah.edu/publications/yarden02/UUSCI-2002-001.pdf", } @InProceedings{SCI:Lu2002a, author = "A. Lu and J. Taylor and M. Hartner and D. Ebert and C.D. Hansen", title = "Hardware-Accelerated Interactive Illustrative Stipple Drawing of Polygonal Objects", booktitle = c-VMV2002, pages = "61--68", year = "2002", month = "November", location = "Erlangen, Germany", url = "https://publications.utah.edu/publications/lu02/stipple_VMV_2002.pdf", } @InProceedings{SCI:Lu2002b, author = "A. Lu and C.J. Morris and D. Ebert and P. Rheingans and C.D. Hansen", title = "Non-Photorealistic Volume Rendering Using Stippling Techniques", booktitle = c-VIS2002, pages = "211--218", year = "2002", location = "Boston, MA", note = "Awarded Best Paper at the conference", keywords = "volume rendering", url = "https://publications.utah.edu/publications/lu02/vis_stipple.pdf", } @InProceedings{SCI:Luk2002a, author = "E. Luke and C.D. Hansen", title = "Semotus Visum: A Flexible Remote Visualization Framework", booktitle = c-VIS2002, pages = "61--68", year = "2002", location = "Boston, MA", url = "https://publications.utah.edu/publications/luke02/Vis02-luke-hansen-2002.pdf", } @Article{SCI:Mac2002a, author = "R.S. MacLeod and Q. Ni and B. Taccardi", title = "Modeling Cardiac Bioelectricity in Realistic Volumes: How Real is Real?", journal = "Einthoven 2002", pages = "45-56", year = "2002", editor = "M.J. Schalij and M.J. Janse and A. van Oosterom and H.J.J. Wellens and E.E. van der Wall", institution = "The Einthoven Foundation", location = "Leiden", keywords = "NCRR, forward problems inverse problems forward simulation inverse solutions finite elements, biopse, cardiac heart, ncrr, scientific computing", url = "https://publications.utah.edu/publications/macleod02/MacLeod-EInthoven2002.pdf", } @InProceedings{SCI:Mac2002b, author = "R.S. MacLeod and E.D. DiBella and B.B. Punske and E.K. Jeong", title = "Multimodal Imaging of Cardiac Activation, Perfusion, and Ischemia", booktitle = "14th Annual Research Symposium of the Medical Imaging Research Laboratory", year = "2002", keywords = "NCRR, forward problems inverse problems forward simulation inverse solutions finite elements, forward simulation, map3d, biopse, cardiac heart, ncrr, scientific computing", } @Article{SCI:Mar2002a, author = "W. Martin and E. Reinhard and P. Shirly and S.G. Parker and W. Thompson", title = "Temporally Coherent Interactive Ray Tracing", journal = "Journal of Graphics Tools", volume = "7", number = "2", pages = "41--48", year = "2002", keywords = "rtrt real-time ray tracing, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/martin02/Temporally_Coherent_Inter_Raytracing.pdf", } @InProceedings{SCI:Nag2002a, author = "S.S. Nagarajan and O. Portniaguine and K. Sekihara and D. Hwang and C.R. Johnson", title = "Performance of a Minimum-Support Imaging Method for Biomagnetic Source Localization", booktitle = c-EMBS2002, volume = "3", pages = "2006-2007", year = "2002", month = "October", location = "Houston", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, biopse, scientific computing", } @Article{SCI:Nie2002a, author = "T. Nielsen and R.B. West and S.C. Linn and O. Alter and M.A. Knowling and J. O'Connell and S. Zhu and M. Fero and G. Sherlock and J.R. Pollack and P.O. Brown and D. Botstein and M. van de Rijn", title = "Molecular Characterisation of Soft Tissue Tumours: a Gene Expression Study", title_url = "http://genome-www.stanford.edu/sarcoma/", journal = "Lancet", volume = "359", number = "9314", pages = "1301–-1307", year = "2002", month = "April", url = "https://publications.utah.edu/publications/neilsen02/Nielsen_Lancet2002.pdf", url = "https://publications.utah.edu/publications/neilsen02/Nielsen_Lancet2002-supp.pdf", } @Article{SCI:Par2002a, author = "S.G. Parker", title = "Interactive Ray Tracing on a Supercomputer", journal = "In Practical Parallel Rendering", year = "2002", editor = "A. Chalmers and E. Reinhard", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", } @InProceedings{SCI:Par2002b, author = "S.G. Parker", title = "A Component-Based Architecture for Parallel Multi-physics PDE Simulation", booktitle = c-ICCS2002, volume = "2331", pages = "719--734", year = "2002", } @InProceedings{SCI:Pas2002b, author = "V. Pascucci and K. Cole-McLaughlin", title = "Efficient Computation of the Topology of Level Sets", booktitle = "Proceedings of IEEE Conference on Visualization ({VIS}-02)", pages = "187--194", year = "2002", month = "October", location = "Boston, MA", note = "UCRL-JC-149277", } @InProceedings{SCI:Pas2002c, author = "V. Pascucci", title = "Slow Growing Subdivision ({SGS}) in Any Dimension: Towards Removing the Curse Of Dimensionality", booktitle = "Proceedings of Eurographics 2002", pages = "451--460", year = "2002", month = "September", location = "Saabruken, Germany", note = "UCRL-ID-144257", } @InProceedings{SCI:Pas2002d, author = "V. Pascucci", title = "Slow Growing Volumetric Subdivision for 3D Volumetric Data", booktitle = "{SIGGRAPH} 2002 Technical Sketches", year = "2002", } @Article{SCI:Por2002a, author = "O. Portniaguine and M.S. Zhdanov", title = "3-D Magnetic Inversion with Data Compression and Image Focusing", journal = j-GEO, volume = "67", number = "5", pages = "1532--1541", year = "2002", month = "September - October", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, focusing inversion, biopse, neuro brain, scientific computing", url = "https://publications.utah.edu/publications/oleg02/geophys2002.pdf", } @Article{SCI:Qua2002a, author = "H.W. Quartero and J.G. Stinstra and E.G. Golbach and E.J. Meijboom and M.J. Peters", title = "Clinical Implications of Fetal Magnetocardiography", journal = "Ultrasound Obstet Gynecol", volume = "20", number = "2", pages = "142--153", year = "2002", keywords = "cardiac heart, ncrr", } @InProceedings{SCI:Rei2002a, author = "E. Reinhard and C.D. Hansen and S.G. Parker", title = "Interactive Ray Tracing of Time Varying Data", booktitle = c-EGPGV2002, pages = "77--82", year = "2002", month = "September", location = "Germany", url = "https://publications.utah.edu/publications/reinhard02/pgv2002-reinhard-hansen.pdf", } @InProceedings{SCI:Sam2002a, author = "A.A. Samsonov and R.T. Whitaker and C.R. Johnson", title = "Noise-Adaptive Nonlinear Filtering Technique for {SENSE}-Reconstructed Images", booktitle = c-ISMRM2002, pages = "74", year = "2002", location = "Honolulu", keywords = "ncrr, ip image processing signal processing, imaging, bisti", url = "https://publications.utah.edu/publications/samsonov02/ismrm2002_1.pdf", } @InProceedings{SCI:Sam2002b, author = "A.A. Samsonov and C.R. Johnson", title = "Noise-Adaptive Anisotropic Diffusion Filtering of {MRI} Images Reconstructed by {SENSE} ({SENS}itivity Encoding) Method", booktitle = c-ISBI2002, pages = "701--704", year = "2002", month = "July", location = "Washington DC", keywords = "ncrr, bisti", url = "https://publications.utah.edu/publications/samsonov02/isbi2002.pdf", } @InProceedings{SCI:Sam2002c, author = "A.A. Samsonov and R.T. Whitaker and E.G. Kholmovski and C.R. Johnson", title = "Parametric Method for Correction of Intensity Inhomogeneity in {MRI} Data", booktitle = c-ISMRM2002, pages = "154", year = "2002", location = "Honolulu", keywords = "NCRR, ip image processing signal processing, neuro brain, ncrr, imaging, bisti", url = "https://publications.utah.edu/publications/samsonov02/ismrm02_abs2.pdf", } @InProceedings{SCI:Sam2002d, author = "A.A. Samsonov and E.G. Kholmovski", title = "Method for Quality Improvement of Images Reconstructed From Sensitivity-Encoded Data", booktitle = c-ISMRM2002, pages = "2408", year = "2002", location = "Honolulu", keywords = "ip image processing signal processing, neuro brain, ncrr, imaging, bisti", url = "https://publications.utah.edu/publications/samsonov02/ismrm02_abs3.pdf", } @InProceedings{SCI:Ser2002a, author = "Y. Serinagaoglu and D.H. Brooks and R.S. MacLeod", title = "Including Sparse Noisy Epicardial Potential Measurements Into Bayesian Inverse Electrocardiography", booktitle = "Proceedings of EMBC 2002", year = "2002", keywords = "forward problems inverse problems forward simulation inverse solutions, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/yesim02/ysd_embc_2002.pdf", } @Article{SCI:Ser2002b, author = "Y. Serinagaoglu and R.S. MacLeod and B. Yilmaz and D.H. Brooks", title = "Multielectrode Venous Catheter Mapping as a High Quality Constraint for Electrocardiographic Inverse Solution", journal = j-JE, volume = "35 (supplement)", year = "2002", keywords = "forward problems inverse problems forward simulation inverse solutions, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/yesim02/ysd_jecg_2002.pdf", } @InProceedings{SCI:Sim2002a, author = "J. Simpson and A.R. Sanderson and E. Luke and K. Balling and R. Coffey", title = "Collaborative Remote Visualization", booktitle = c-ACMSC2002, year = "2002", month = "November", location = "Baltimore, Maryland", keywords = "undergrad, esp, remote visualization, collaborative remote visualization, scientific visualization", url = "https://publications.utah.edu/publications/simpson02/CRV-2.pdf", } @InProceedings{SCI:Sim2002b, author = "J. Simpson and A.R. Sanderson and E. Luke and K. Balling and R. Coffey", title = "Collaborative Remote Visualization", booktitle = "Presented before the Utah State Legislature", year = "2002", keywords = "undergrad, esp, remote visualization, collaborative remote visualization, scientific visualization", url = "https://publications.utah.edu/publications/simpson02/CRV-1.pdf", } @Article{SCI:Sti2002a, author = "J. Stinstra and M. Peters", title = "The Influence of Fetoabdominal Tissues on Fetal {ECG}s and {MCG}s", journal = "Arch Physiol Biochem", volume = "110", number = "3", pages = "165--176", year = "2002", keywords = "ncrr", } @InProceedings{SCI:Tac2002a, author = "B. Taccardi and B.B. Punske and R.S. MacLeod and Q. Ni", title = "Visualization, Analysis and Physiological Interpretation of Three-dimentional Cardiac Electric Fields", booktitle = "Proceedings of 24th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society", year = "2002", keywords = "NCRR, map3d, cardiac heart, ncrr, scientific visualization", } @InProceedings{SCI:Tas2002a, author = "T. Tasdizen and R.T. Whitaker and P. Burchard and S. Osher", title = "Geometric Surface Smoothing via Anisotropic Diffusion of Normals", booktitle = c-VIS2002, pages = "125--132", year = "2002", keywords = "ip image processing signal processing, surface processing, imaging", url = "https://publications.utah.edu/publications/tolga02/vis02.pdf", } @Article{SCI:Tri2002a, author = "X. Tricoche and T. Wischgoll and G. Scheuermann and H. Hagen", title = "Topology Tracking for the Visualization of Time-Dependent Two-Dimensional Flows", journal = "Computer & Graphics", volume = "26", pages = "249--257", year = "2002", url = "https://publications.utah.edu/publications/Tri2002a/tracking.pdf", } @Article{SCI:Tri2002b, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Scaling the Topology of Symmetric Second Order Tensor Fields", journal = "Hierarchical and Geometrical Methods in Scientific Visualization", pages = "171-184", year = "2002", publisher = "Springer, Berlin", url = "https://publications.utah.edu/publications/tricoche02/scaling.pdf", } @PhdThesis{SCI:Tri2002c, author = "X. Tricoche", title = "Vector and Tensor Topology Simplification, Tracking, and Visualization", year = "2002", school = "Universitat Kaiserslautern", note = "Schriftenreihe Fachbereich Informatik (3)", url = "https://publications.utah.edu/publications/tricoche02/phd.pdf", } @InProceedings{SCI:Uit2002b, author = "R. Van Uitert and C.R. Johnson", title = "Can a Spherical Model Substitute for a Realistic Head Model in Forward and Inverse {MEG} Simulations?", booktitle = c-BIOMAG2002, year = "2002", month = "August", location = "Jena, Germany", keywords = "ncrr, SCIRun, forward problems inverse problems forward simulation inverse solutions finite elements, inverse meg, scirun, biopse, neuro brain, scientific computing, problem solving environments, pse", url = "https://publications.utah.edu/publications/vanuiter02/BioMagPaperFinal.pdf", } @Article{SCI:Ver2002a, author = "A.I. Veress and J.A. Weiss and G.T. Gullberg and D.G. Vince and R.D. Rabbitt", title = "Strain Measurement In Coronary Arteries Using Intravascular Ultrasound And Deformable Images", journal = j-JBE, volume = "124", pages = "734--741", year = "2002", keywords = "deformable image registration, warping, forward problems inverse problems forward simulation inverse solutions, finite elements, computational mechanics, computational biomechanics, scalar field methods, volume rendering, ip image processing signal processing, segmentation", url = "https://publications.utah.edu/publications/veress02/veress_jbme_2002.pdf", } @Article{SCI:Wal2002a, author = "M. Walkley and P.K. Jimack and M. Berzins", title = "Anisotropic Adaptivity for Finite Element Solutions of 3-D Convection-Dominated Problems", journal = j-IJNMF, volume = "40", number = "3-4", pages = "551--559", year = "2002", keywords = "finite elements, fluid structure problems", url = "https://publications.utah.edu/publications/walkley02/WJB01.pdf", } @Article{SCI:Wal2002b, author = "M. Walkley and M. Berzins", title = "A finite element model for the two-dimensional extended Boussinesq equations", journal = "International Journal for Numerical Methods in Fluids", volume = "39", number = "10", pages = "865--885", year = "2002", url = "https://publications.utah.edu/publications/walkley02/MW_MB_IJNMF_2002.pdf", } @Article{SCI:Wei2002a, author = "J.A. Weiss and J.C. Gardiner and C. Bonifasi-Lista", title = "Ligament Material Behavior is Nonlinear, Viscoelastic and Rate-Independent Under Shear Loading", journal = "Journal of Biomechanics", volume = "35", pages = "943--950", year = "2002", url = "https://publications.utah.edu/publications/weiss02/shear_exp_jbiomech_2002.pdf", } @Article{SCI:Whi2002a, author = "R.T. Whitaker and V. Elangovan", title = "A Direct Approach to Estimating Surfaces in Tomographic Data", journal = j-JMIA, volume = "6", number = "3", pages = "235--249", year = "2002", keywords = "ip image processing signal processing, segmentation, surface processing, imaging", } @InProceedings{SCI:Whi2002b, author = "R.T. Whitaker and J. Gregor", title = "A Maximum Likelihood Surface Estimator for Dense Range Data", booktitle = j-PAMI, pages = "1372--1387", year = "2002", keywords = "ip image processing signal processing, surface processing, imaging", } @Article{SCI:Whi2002c, author = "R.T. Whitaker and E. L. Valdes-Juarez", title = "On the Reconstruction of Height Functions and Terrain Maps from Dense Range Data", journal = j-TIP, volume = "11", number = "7", pages = "704--716", year = "2002", keywords = "ip image processing signal processing, surface processing, imaging", } @Article{SCI:Xiu2002a, author = "D. Xiu and G.E. Karniadakis", title = "The Wiener-Askey Polynomial Chaos for Stochastic Differential Equations", journal = "SIAM Journal on Scientific Computing", volume = "24", number = "2", pages = "619--644", year = "2002", keywords = "polynomial chaos, Askey scheme, orthogonal polynomials, stochastic differential equations, spectral methods, Galerkin projection", url = "https://publications.utah.edu/publications/xiu02/Xiu_SIAM_JSC2002.pdf", } @Article{SCI:Xiu2002b, author = "D. Xiu and D. Lucor and C.-H. Su and G.E. Karniadakis", title = "Stochastic Modeling of Flow-Structure Interactions using Generalized Polynomial Chaos", journal = "Journal of Fluids Engineering", volume = "124", number = "1", pages = "51--59", year = "2002", url = "https://publications.utah.edu/publications/xiu02/Xiu_JFE2002.pdf", } @Article{SCI:Xiu2002c, author = "D. Xiu and G.E. Karniadakis", title = "Modeling Uncertainty in Steady State Diffusion Problems via Generalized Polynomial Chaos", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "191", number = "43", pages = "4927--4948", year = "2002", keywords = "Uncertainty, Random diffusion, Polynomial chaos", url = "https://publications.utah.edu/publications/xiu02/Xiu_CMAME2002.pdf", } @Article{SCI:Xu2002a, author = "J. Xu and D. Xiu and G.E. Karniadakis", title = "A Semi-Lagrangian Method for Turbulence Simulations Using Mixed Spectral Discretizations", journal = "Journal of Scientific Computing", volume = "17", number = "1-4", pages = "585--597", year = "2002", url = "https://publications.utah.edu/publications/xu02/Xu_JSC2002.pdf", } @Article{SCI:Ahm2001a, author = "I. Ahmad and M. Berzins", title = "MOL Solvers for Hyperbolic PDEs with Source Terms", journal = "Mathematics and Computers in Simulation", volume = "56", pages = "1115--1125", year = "2001", url = "https://publications.utah.edu/publications/ahmad01/Ahmad_MOL-solvers.pdf", } @Book{SCI:Alt2001a, author = "O. Alter and Y. Yamamoto", title = "Quantum Measurement of a Single System", title_url = "http://www.alterlab.org/publications/Alter_Yamamoto_Wiley-Interscience_2001.pdf", year = "2001", publisher = "Wiley-Blackwell", month = "May", isbn = "9780471283089", } @Article{SCI:Alt2001b, author = "O. Alter and P.O. Brown and D. Botstein", title = "Processing and Modeling Genome-Wide Expression Data Using Singular Value Decomposition", title_url = "http://www.alterlab.org/SVD/SPIE_2001/", journal = "Microarrays: Optical Technologies and Informatics", volume = "4266", pages = "171--186", year = "2001", editor = "M.L. Bittner and Y. Chen and A.N. Dorsel and E.R. Dougherty (International Society for Optical Engineering Bellingham)", url = "https://publications.utah.edu/publications/alter01/Alter_SPIE2001.pdf", url = "https://publications.utah.edu/publications/alter01/Alter_SPIE2001-appendix.pdf", } @InProceedings{SCI:Ber2001a, author = "M. Bertram and D. Laney and M. Duchaineau and C.D. Hansen and B. Hamann and K. Joy", title = "Wavelet Representation of Contour Sets", booktitle = c-VIS2001, pages = "303--310, 566", year = "2001", keywords = "computational pde pdes computational partial differential equations evaporation, ip image processing signal processing, surface processing", url = "https://publications.utah.edu/publications/bertram01/vis01-bertram.pdf", } @InCollection{SCI:Ber2001b, author = "M. Berzins and A.S. Tomlin and S. Ghorai and I. Ahmad J.Ware", title = "Unstructured Mesh Adaptive Mesh {MOL} Solvers for Atmospheric Reacting Flow Problems", booktitle = "The Adaptive Method of Lines", pages = "317--351", year = "2001", editor = "A. Vande Wouwer and Ph. Saucez and W. Schiesser", publisher = "{CRC} Press, Boca Raton, Florida, {USA}.", note = "invited chapter", isbn = "1-58488-231-X", url = "https://publications.utah.edu/publications/berzins01/mbmolch.pdf", } @InCollection{SCI:Ber2001c, author = "M. Berzins and L. Durbeck", title = "Unstructured Mesh Solvers for Hyperbolic PDEs with Source Terms: Error Estimates and Mesh Quality", booktitle = "Godunonv Methods: Theory and Applications", pages = "117--124", year = "2001", editor = "E. Toro et al.", publisher = "Kluwer Academic/Plenum", note = "Proc. of Godunov Conf. October 18-22, Oxford UK", url = "https://publications.utah.edu/publications/berzins01/mbgodunov.pdf", } @Article{SCI:Ber2001d, author = "M. Berzins", title = "Modified Mass Matrices and Positivity Preservation for Hyperbolic and Parabolic {PDE}s", journal = "Communications in Numerical Methods in Engineering", volume = "17", pages = "659--666", year = "2001", url = "https://publications.utah.edu/publications/berzins01/austpapv3.pdf", } @InProceedings{SCI:Bre2001a, author = "J.D. Brederson and M. Ikits and C.R. Johnson and C.D. Hansen", title = "A Prototype System For Synergistic Data Display", booktitle = "{IEEE} Virtual Reality 2001", year = "2001", keywords = "vector field methods, visual haptic workbench, scientific visualization", url = "https://publications.utah.edu/publications/jdb01/vr01-wk.ps", url = "https://publications.utah.edu/publications/jdb01/vr01-wk.ps.gz", url = "https://publications.utah.edu/publications/jdb01/vr01-wk.pdf", } @Article{SCI:Bre2001b, author = "D. Breen and R.T. Whitaker", title = "A Level-Set Approach for the Metamorphosis of Solid Models", journal = j-TVCG, volume = "7", number = "2", pages = "173--192", year = "2001", keywords = "ip image processing signal processing, segmentation, imaging, level-set methods, level-sets", url = "https://publications.utah.edu/publications/breen01/breen_whitaker_2001.pdf", } @InProceedings{SCI:But2001a, author = "C.R. Butson", title = "From Action Potentials to Surface Potentials", booktitle = "Multilevel Neuronal Modeling Workshop", year = "2001", month = "May", location = "Edinburgh, Scotland", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, forward simulation, scalar field methods, bipolar stimulation, neuron potential simulation, ncrr", } @InProceedings{SCI:But2001b, author = "C.R. Butson and G.A. Clark", title = "Random Noise Confers a Paradoxical Improvement in the Ability of a Simulated Hermissenda Photoreceptor Network to Encode Light Intensity", booktitle = "Society for Neuroscience Conference", year = "2001", month = "November", keywords = "bipolar stimulation, neuron potential simulation", } @Article{SCI:Cor2001a, author = "N.M. Cordaro and J.A. Weiss and J.A. Szivek", title = "Strain Transfer Between a CPC Coated Strain Gauge and Cortical Bone During Bending", journal = "Journal of Biomedical Materials Research", volume = "58", number = "2", pages = "147--155", year = "2001", url = "https://publications.utah.edu/publications/cordaro01/jbmr_final.pdf", } @InProceedings{SCI:DeT2001a, author = "C. DeTar and A.L. Fogelson and C.R. Johnson and C.A. Sikorski", title = "Computational Engineering and Science Program at the University of Utah", booktitle = c-ICCS2001, pages = "1176--1185", year = "2001", editor = "V. Alexandrov and J. Dongarra and B. Juliano and R. Renner and K. Tan", month = "May", location = "San Francisco", keywords = "scientific computing, scientific visualization, pse, problem solving environments, imaging,, , imaging", url = "https://publications.utah.edu/publications/ces01/ces.pdf", } @InProceedings{SCI:Ela2001a, author = "V. Elangovan and R.T. Whitaker", title = "From Sinograms to Surfaces: A Direct Approach to Segmenting Tomographic Data", booktitle = c-MICCAI2001, pages = "213--223", year = "2001", month = "October", keywords = "ip image processing signal processing, segmentation, surface processing, imaging", url = "https://publications.utah.edu/publications/miccai01/sino_surf.pdf", } @Article{SCI:Gar2001a, author = "J.C. Gardiner and J.A. Weiss and T.D. Rosenberg", title = "Strain in the Human Medial Collateral Ligament During Valgus Loading", journal = "Clinical Orthopaedics and Related Research", volume = "391", pages = "266--274", year = "2001", url = "https://publications.utah.edu/publications/gardiner01/mclstrain_clinorthop.pdf", } @Article{SCI:Gar2001b, author = "J.C. Gardiner and J.A. Weiss", title = "Simple Shear Testing of Parallel-Fibered Planar Soft Tissues", journal = "Journal of Biomechanical Engineering", volume = "123", pages = "1--5", year = "2001", url = "https://publications.utah.edu/publications/gardiner01/JBMEshear.pdf", } @InProceedings{SCI:Goo2001a, author = "C.E. Goodyer and R. Fairlie and M. Berzins and L.E. Scales", title = "Adaptive Techniques for Elastohydrodynamic Lubrication Solvers", booktitle = "Tribology Research: From Model Experiment to Industrial Problem, Proceedings of the 27th Leeds-Lyon Symposium on Tribology", year = "2001", editor = "G. Dalmaz et al.", publisher = "Elsevier", keywords = "EHL, , ehl", url = "https://publications.utah.edu/publications/goodyer01/LeedsLyon2000.pdf", } @InProceedings{SCI:Goo2001b, author = "C.E. Goodyer and R. Fairlie and M. Berzins and L.E. Scales", title = "Adaptive Mesh Methods for Elastohydrodynamic Lubrication", booktitle = "ECCOMAS CFD 2001: Computational Fluid Dynamics Conference Proceedings", year = "2001", publisher = "Institute of Mathematics and its Applications", isbn = "0-905-091-12-4", keywords = "EHL", url = "https://publications.utah.edu/publications/goodyer01/ECCOMAS_Goodyer01.pdf", } @PhdThesis{SCI:Goo2001c, author = "C.E. Goodyer", title = "Adaptive Numerical Methods for Elastohydrodynamic Lubrication", year = "2001", school = "School of Computing, University of Leeds", month = "May", note = "Advisor: Martin Berzins", url = "https://publications.utah.edu/publications/Goo2001c/Goodyer_PhDThesis2001.pdf", } @InProceedings{SCI:Got2001, author = "A. Gothandaraman and R.T. Whitaker and J. Gregor", title = "Total Variation For The Removal of Blocking Effects in {DCT} based Encoding", booktitle = c-ICIP, pages = "455--458", year = "2001", month = "October", keywords = "ip image processing signal processing, imaging", } @Article{SCI:Gue2001a, author = "C. Guerra and V. Pascucci", title = "Finding Line Segments with Tabu Search", journal = "{IEICE} Transactions on Information & Systems", volume = "E84-D", number = "12", pages = "1739-1744", year = "2001", month = "December", } @InProceedings{SCI:Gum2001a, author = "S. Gumhold and X. Wang and R.S. MacLeod", title = "Feature Extraction from Point Clouds", booktitle = "Proceedings, 10th International Meshing Round Table", pages = "293--305", year = "2001", publisher = "Sandia National Laboratories", keywords = "ncrr, computational pde pdes computational partial differential equations evaporation, scientific computing", url = "https://publications.utah.edu/publications/gumhold01/sr0006.pdf", } @Unpublished{SCI:Hig2001a, author = "G. Higgins and B. Athey and J. Bassingthwaighte and J. Burgess and H. Champion and K. Cleary and P. Dev and J. Duncan and M. Hopmeier and D. Jenkins and C.R. Johnson and H. Kelly and R. Leitch and W. Lorensen and D. Metaxas and V. Spitzer and N. Vaidehi and K. Vosburgh and R. Winslow", title = "Modeling and Simulation in Medicine: Towards an Integrated Framework", journal = "Computer Aided Surgery", volume = "6", number = "1", year = "2001", note = "Final report of the meeting of the same title held July 20-21, 2000, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.", } @InProceedings{SCI:Iki2001, author = "M. Ikits and J.D. Brederson and C.D. Hansen and J.M. Hollerbach", title = "An Improved Calibration Framework for Electromagnetic Tracking Devices", booktitle = c-VR2001, pages = "63--70", year = "2001", address = "Yokohama, Japan,", month = "Mar", keywords = "vr virtual reality haptics, uve, scientific visualization, haptics", url = "https://publications.utah.edu/publications/ikits01/vr01.pdf", } @InProceedings{SCI:Iki2001b, author = "M. Ikits and J.D. Brederson and C.D. Hansen and J.M. Hollerbach", title = "Calibration of 6DOF Electromagnetic Tracking Devices", booktitle = "{IEEE} VR2001", pages = "63--70", year = "2001", location = "Japan", keywords = "vr virtual reality haptics, uve", url = "https://publications.utah.edu/publications/ikits01/Ikits_VR2001.pdf", } @Article{SCI:Joh2001a, author = "C.R. Johnson and D. Brederson and C.D. Hansen and M. Ikits and G. Kindlmann and Y. Livnat and S.G. Parker and D.M. Weinstein and R.T. Whitaker", title = "Computational Field Visualization", journal = "Computer Graphics", volume = "35", number = "4", pages = "5--9", year = "2001", keywords = "ncrr", url = "https://publications.utah.edu/publications/crj01/crj_CFV2001.pdf", } @InCollection{SCI:Joh2001b, author = "C.R. Johnson and Y. Livnat and L. Zhukov and D. Hart and G. Kindlmann", title = "Computational Field Visualization", booktitle = "Mathematics Unlimited -- 2001 and Beyond", volume = "2", pages = "605--630", year = "2001", editor = "B. Engquist and W. Schmid", publisher = "Springer-Verlag", keywords = "cfd computational fluid dynamics, computational pde pdes computational partial differential equations evaporation, scalar field methods, vector field methods, tensor field methods, scirun, biopse, uintah, scirun fusion, scientific visualization, scientific computing, pse, problem solving environment", url = "https://publications.utah.edu/publications/math2000/paper_final.pdf", url = "https://publications.utah.edu/publications/math2000/paper_final.ps", url = "https://publications.utah.edu/publications/math2000/paper_final.ps.gz", } @InCollection{SCI:Joh2001c, author = "C.R. Johnson and M. Mohr and U. Ruede and A. Samsonov and K. Zyp", title = "Multilevel Methods for Inverse Bioelelectric Field Problems", booktitle = "Lecture Notes in Computational Science and Engineering - Multiscale and Multiresolution Methods: Theory and Applications", volume = "20", pages = "331--346", year = "2001", editor = "T.J. Barth and T.F. Chan and R. Haimes", publisher = "Springer-Verlag Publishing", address = "Heidelberg", month = "October", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, scirun, biopse, scientific computing", url = "https://publications.utah.edu/publications/yosemite/paper_final.ps", } @InCollection{SCI:Joh2001d, author = "C.R. Johnson", title = "Adaptive Finite Element and Local Regularization Methods for the Inverse {ECG} Problem", booktitle = "Inverse Problems in Electrocardiology", volume = "5", pages = "51--88", year = "2001", editor = "Peter Johnston", series = "Advances in Computational Biomedicine", publisher = "{WIT} Press", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scirun, biopse, cardiac heart, scientific computing", url = "https://publications.utah.edu/publications/crj01/inverse_ecg99.ps.gz", url = "https://publications.utah.edu/publications/crj01/inverse_ecg99.ps", } @Article{SCI:Joh2001e, author = "C.R. Johnson", title = "Computational Bioimaging for Medical Diagnosis and Treatment", journal = "Communications of the {ACM}", volume = "44", number = "3", pages = "74--76", year = "2001", month = "March", keywords = "pse pses problem solving envoronment, bioelectric fields", url = "https://publications.utah.edu/publications/crj01/Johnson-ACM-2001.pdf", } @Article{SCI:Jos2001a, author = "S. Joshi and S. Pizer and P.T. Fletcher and A. Thall and G. Tracton", title = "Multi-scale 3-D Deformable Model Segmentation Based on Medial Description", journal = "Information Processing in Medical Imaging (IPMI)", pages = "64--77", year = "2001", editor = "MF Insana and RM Leahy", month = "June", url = "https://publications.utah.edu/publications/joshi01/IPMI01-Joshi-defm.pdf", } @InCollection{SCI:Kir2001a, author = "R.M. Kirby and G.E. Karniadakis and O. Mikulchenko and K. Mayaram", title = "Integrated Simulation for MEMS: Coupling Flow-Structure-Thermal-Electrical Domains", booktitle = "The MEMS Handbook", year = "2001", editor = "M. Gad-el-Hak", publisher = "Informa UK Limited", } @InCollection{SCI:Kir2001b, author = "R.M. Kirby and G.E. Karniadakis", title = "Under-Resolution and Diagnostics in Spectral Simulations of Complex-Geometry Flows", booktitle = "Turbulent Flow Computation", pages = "1--42", year = "2001", editor = "D. Drikakis and B. Geurts", publisher = "Springer", } @Article{SCI:Kir2001c, author = "R.M. Kirby and G.E. Karniadakis and O. Mikulchenko and K. Mayaram", title = "An Integrated Simulator for Coupled Domain Problems in MEMS", journal = "Journal of Microelectromechanical Systems", volume = "10", number = "3", pages = "379--399", year = "2001", } @InProceedings{SCI:Kni2001a, author = "J.M. Kniss and G. Kindlmann and C.D. Hansen", title = "Interactive Volume Rendering Using Multi-Dimensional Transfer Functions and Direct Manipulation Widgets", booktitle = c-VIS2001, pages = "255--262", year = "2001", month = "October", keywords = "scalar field methods, volume rendering, transfer functions, simian, scientific visualization", url = "https://publications.utah.edu/publications/jmk01/simian-paper.pdf", } @Article{SCI:Kni2001b, author = "J.M. Kniss and P. McCormick and A. McPherson and J. Ahrens and J. Painter and A. Keahey and C.D. Hansen", title = "Interactive Texture-based Volume Rendering for Large Datasets", journal = j-CGA, volume = "21", number = "4", pages = "52--61", year = "2001", month = "July/August", keywords = "scalar field methods, volume rendering, transfer functions, simian, scientific visualization", url = "https://publications.utah.edu/publications/jmk01/TRex_CGA.pdf", } @Article{SCI:Kni2001c, author = "J.M. Kniss and P. McCormick and A. McPherson and J. Ahrens and J. Painter and A. Keahey and C.D. Hansen", title = "T-Rex, Texture-based Volume Rendering for Extremely Large Datasets", journal = j-CGA, volume = "21", number = "4", pages = "52--61", year = "2001", keywords = "T-Rex, scalar field methods, volume rendering, t-rex", url = "https://publications.utah.edu/publications/jmk01/Kniss_TRex2001.pdf", } @InProceedings{SCI:Lai2001a, author = "D.H. Laidlaw and R.M. Kirby and J.S. Davidson and T.S. Miller and M. da Silva and W.H. Warren and M. Tarr", title = "Quantitative Comparative Evaluation of {2D} Vector Field Visualization Methods", booktitle = "Proceedings of {IEEE} Visualization 2001", pages = "143--150", year = "2001", month = "October", location = "San Diego, CA", } @Article{SCI:Leg2001a, author = "I. Lagzi and A.S. Tomlin and T.Turanyi and L.Haszpra and M.Berzins", title = "The Simulation of Photochemical Smog Episodes in Hungary and Central Europe Using Adaptive Gridding Models", journal = "Lecture Notes in Computer Science (LCNS), Computational Science - ICCS 2001", volume = "2074/2001", pages = "67--76", year = "2001", publisher = "Springer Berlin / Heidelberg", isbn = "978-3-540-42233-4", keywords = "atmospherics, pollution, environment, adaptive grid modeling", url = "https://publications.utah.edu/publications/lagzi01/lagzi_lncs_2001.pdf", } @InProceedings{SCI:Lin2001a, author = "P. Lindstrom and V. Pascucci", title = "Visualization of Large Terrains Made Easy", booktitle = "Proceedings of the 12th Annual {IEEE} Conference on Visualization ({VIS}-01)", pages = "363--370, 574", year = "2001", organization = "IEEE Computer Society", month = "October 21-26", location = "San Diego, CA", note = "UCRL-JC-144753", } @InProceedings{SCI:Liv2001, author = "Y. Livnat and C.D. Hansen and S.G. Parker and C.R. Johnson", title = "Isosurface extraction for large-scale datasets", booktitle = "Proceedings of Scientific Visualization -Dagstuhl`2000", year = "2001", editor = "F. Post", keywords = "scalar field methods, isosurface extraction, scientific visualization", url = "https://publications.utah.edu/publications/yarden01/dagstuhl00.pdf", } @InProceedings{SCI:Lor2001a, author = "P. Lorenzen and S. Joshi and G. Gerig and E. Bullitt", title = "Tumor-Induced Structural Radiometric Asymmetry in Brain Images", booktitle = "Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA)", pages = "163--170", year = "2001", month = "2001", url = "https://publications.utah.edu/publications/lorenzen01/MMBIA01-Lorenzen-brain.pdf", } @Article{SCI:Ma2001, author = "K. Ma and S.G. Parker", title = "Massively Parallel Software Rendering for Visualizing Large-Scale DataSets", journal = j-TVCG, pages = "72--83", year = "2001", month = "July/August", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization", url = "https://publications.utah.edu/publications/ma01/ma2001.pdf", } @Article{SCI:Mac2001a, author = "R.S. MacLeod and B. Yilmaz and B. Taccardi and B.B. Punske and Y. Serina and D.H. Brooks", title = "Direct and Inverse Methods for Cardiac Mapping Using Multielectrode Catheter Measurements", journal = "Journal of Biomedizinische Technik", volume = "46(supp)", pages = "207--209", year = "2001", keywords = "ncrr, map3d, cardiac heart, scientific visualization, forward problems inverse problems forward simulation inverse solutions finite elements", } @Article{SCI:Mac2001b, author = "R.S. MacLeod and B.B. Punske and B. Yilmaz and S. Shome and B. Taccardi", title = "The Role of Heart Rate in Myocardial Ischemia From Restricted Coronary Perfusion", journal = j-JE, volume = "34 (supp)", pages = "43--51", year = "2001", note = "ISCE conference paper", keywords = "ncrr, map3d, cardiac heart, scientific visualization", url = "https://publications.utah.edu/publications/macleod_isce01/isce01.pdf", } @InProceedings{SCI:Mcc2001a, author = "J. McCorquodale and J.D. de St. Germain and S.G. Parker and C.R. Johnson", title = "The Uintah Parallelism Infrastructure: A Performance Evaluation on the SGI Origin 2000", booktitle = c-HPC2001, year = "2001", month = "Mar", location = "Seattle", keywords = "scirun, uintah, csafe, sgi", url = "https://publications.utah.edu/publications/hpc01-dav/hpc01.pdf", } @InProceedings{SCI:Mil2001, author = "M. Miller and C. Moulding and J. Dongarra and C.R. Johnson", title = "Grid-enabling Problem Solving Environments: A Case Study of {SCIR}un and Netsolv", booktitle = c-HPC2001, pages = "98--103", year = "2001", series = "2001 Advanced Simulation Technologies Conference", organization = "Society for Modeling and Simulation International", month = "April", keywords = "scirun, netsolv, grid", } @InProceedings{SCI:Pas2001a, author = "V. Pascucci and R.J. Frank", title = "Global Static Indexing for Real-time Exploration of Very Large Regular Grids", booktitle = "Proceedings of Supercomputing 2001", year = "2001", organization = "ACM", month = "Nov", note = "UCRL-JC-144754", } @InProceedings{SCI:Pas2001b, author = "V. Pascucci", title = "On the Topology of the Level Sets of a Scalar Field", booktitle = "Proceedings of the 13th Canadian Conference on Computational Geometry", pages = "141--144", year = "2001", month = "August", note = "UCRL-JC-142262", } @Article{SCI:Pfi2001a, author = "H. Pfister and B. Lorensen and C. Bajaj and G. Kindlmann and W. Schroeder and L.S. Avila and K.M. Raghu and R. Machiraju and J. Lee", title = "The transfer function bake-off", journal = "IEEE Computer Graphics and Applications", volume = "21", number = "1", pages = "16--22", year = "2001", publisher = "IEEE", url = "https://publications.utah.edu/publications/Pfi2001a/The Transfer Function Bake-Off.pdf", } @Article{SCI:Piz2001a, author = "S. Pizer and S. Joshi and P.T. Fletcher and M. Styner and G. Tracton and Z. Chen", title = "Segmentation of Single-Figure Objects by Deformable M-reps", journal = "Medical Image Computing and Computer-Assisted Intervention (MICCAI)", pages = "862--871", year = "2001", editor = "WJ Niessen and MA Viergever", publisher = "New York", month = "October", url = "https://publications.utah.edu/publications/pizer01/MICCAI01-Pizer-defmreps.pdf", } @InProceedings{SCI:Por2001a, author = "O. Portniaguine and D.M. Weinstein and C.R. Johnson", title = "Focusing Inversion of Electroencephalography and Magnetoencephalography Data", booktitle = "3rd International Symposium On Noninvasive Functional Source Imaging", volume = "46", pages = "115--117", year = "2001", series = "Journal of Biomedizinische Technik (special issue)", address = "Innsbruck, Austria", month = "Sep", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, focusing inversion, scirun, biopse, scientific computing", url = "https://publications.utah.edu/publications/nfsi01-oleg/nfsi01-oleg.ps.gz", url = "https://publications.utah.edu/publications/nfsi01-oleg/nfsi01-oleg.ps", url = "https://publications.utah.edu/publications/nfsi01-oleg/nfsi01-oleg.pdf", } @InProceedings{SCI:Raw2001a, author = "R. Rawat and S.G. Parker and P.J. Smith and C.R. Johnson", title = "Parallelization and Integration of Fire Simulations in the Uintah {PSE}", booktitle = "Proceedings of the Tenth {SIAM} Conference on Parallel Processing for Scientific Computing", year = "2001", month = "March 12-14", location = "Portsmouth, Virginia", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, uintah, fire pool, csafe c-safe", } @InProceedings{SCI:Rei2001a, author = "E. Reinhard and P. Shirley and C.D. Hansen", title = "Parallel point reprojection", booktitle = "Proceedings of the IEEE 2001 symposium on parallel and large-data visualization and graphics", pages = "29--35", year = "2001", url = "https://publications.utah.edu/publications/Rei2001a/2001_Reinhard_Shirley_Hansen_Parallel_Point_Reprojection.pdf", } @Article{SCI:Sch2001a, author = "L.M. Schultz and C.R. Butson and G.A. Clark", title = "Post-light potentiation at type B to A photoreceptor connections in Hermissenda", journal = "Neurobiology of Learning and Memory", volume = "76", number = "1", pages = "7--32", year = "2001", month = "July", url = "https://publications.utah.edu/publications/schultz01/Schultz2001_PLP.pdf", } @InProceedings{SCI:Sha2001a, author = "A. Shamir and V. Pascucci", title = "Temporal and Spatial Level of Details for Dynamic Meshes", booktitle = "Proceedings of the ACM Symposium on Virtual Reality Software and Technology 2001", year = "2001", organization = "ACM", month = "November", location = "Banff Center, Canada", } @Article{SCI:Tac2001a, author = "B. Taccardi and B.B. Punske and R.S. MacLeod and Q. Ni", title = "Extracardiac Effects of Myocardial Electrical Anisotropy", journal = j-BMT, volume = "46(suppl 2)", pages = "216--218", year = "2001", keywords = "NCRR, cardiac heart, ncrr", } @Article{SCI:Tri2001a, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Tensor Topology Tracking: A Visualization Method for Time-Dependent 2D Symmetric Tensor Fields", journal = "Computer Graphics Forum", volume = "20", number = "3", pages = "461-470", year = "2001", publisher = "Wiley-Blackwell", month = "Sep", url = "https://publications.utah.edu/publications/Tri2001a/ttt.pdf", } @InProceedings{SCI:Tri2001b, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Vector and Tensor Topology Simplification on Irregular Grids", booktitle = "Proceedings of the Joint Eurographics-{IEEE} {TCVG} Symposium on Visualization: Data Visualization 2001", pages = "101--116", year = "2001", url = "https://publications.utah.edu/publications/tricoche01/irregular.pdf", } @InProceedings{SCI:Tri2001c, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Topology-based Visualization of Time-Dependent {2D} Vector Fields", booktitle = "Proceedings of the Joint Eurographics-{IEEE} {TCVG} Symposium on Visualization: Data Visualization 2001", pages = "117--126", year = "2001", url = "https://publications.utah.edu/publications/tricoche01/timedependent.pdf", } @InProceedings{SCI:Tri2001d, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Continuous Topology Simplification of Planar Vector Fields", booktitle = "Proceedings of {IEEE} Visualization 2001", pages = "159--166", year = "2001", url = "https://publications.utah.edu/publications/tricoche01/continuous.pdf", } @InProceedings{SCI:Uit2001, author = "R. Van Uitert and D. Weinstein and C.R. Johnson and L. Zhukov", title = "Finite Element {EEG} and {MEG} Simulations for Realistic Head Models: Quadratic vs. Linear Approximations", booktitle = j-BMT, volume = "46", pages = "32--34", year = "2001", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, scirun, biopse, neuro brain, scientific computing", url = "https://publications.utah.edu/publications/nfsi01-robv/nfsi01-robv.pdf", } @InProceedings{SCI:Wal2001a, author = "M. Walkley and P.K. Jimack and M. Berzins", title = "Mesh Quality for Three-dimensional Finite Element Solutions on Anisotropic Meshes", booktitle = "Proceedings of FEM3D", volume = "15", pages = "310--321", year = "2001", series = "GUKUTO International Series, Mathematical Sciences and Applications", keywords = "finite elements", url = "https://publications.utah.edu/publications/walkley01/BJW00.pdf", } @Article{SCI:Wal2001b, author = "M. Walkley and P.K. Jimack and M. Berzins", title = "Anisotropic Adaptivity for Finite Element Solutions of 3-D Convection-Dominated Problems", journal = "Numerical Methods for Fluid Dynamics VII", pages = "525--531", year = "2001", editor = "M.J. Baines", publisher = "ICFD, Oxford", isbn = "0 9524929 2 X", keywords = "finite elements, cfd computational fluid dynamics", url = "https://publications.utah.edu/publications/walkley01/WJB01.pdf", } @InProceedings{SCI:Wal2001c, author = "M. Walkley and P.K. Jimack and M. Berzins", title = "Mesh Quality and Anisotropic Adaptivity for Finite Element Solutions of 3-D Convection-Dominated Problems", booktitle = "Proceedings of ECCOMAS Computational Fluid Dynamics Conference 2001", year = "2001", location = "Swansea, UK", isbn = "0 905 091 12 4", keywords = "finite elements, cfd computational fluid dynamics", url = "https://publications.utah.edu/publications/walkley01/WJB01b.pdf", } @Article{SCI:Wan2001a, author = "L. Wang and S.C. Joshi and M.I. Miller and J. Csernansky", title = "Statistical Analysis of Hippocampal Asymmetry in Schizophrenia", journal = "Neuroimage", volume = "14", number = "3", pages = "531--545", year = "2001", month = "September", } @InProceedings{SCI:Wei2001a, author = "D. Weinstein and O. Portniaguine and L. Zhukov", title = "A Comparison of Dipolar and Focused Inversion for {EEG} Source Localization", booktitle = j-BMT, volume = "46 (special issue)", pages = "121--123", year = "2001", month = "Sep", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, focusing inversion, scirun, biopse", url = "https://publications.utah.edu/publications/nfsi01-dmw/nfsi01-dmw.pdf", } @Article{SCI:Wei2001b, author = "J.A. Weiss and J.C. Gardiner", title = "Computational Modeling of Ligament Mechanics", journal = "Critical Reviews in Biomedical Engineering", volume = "29", number = "3", pages = "1--70", year = "2001", url = "https://publications.utah.edu/publications/weiss01/critrev.pdf", } @Article{SCI:Wes2001a, author = "R. Westermann and C.R. Johnson and T. Ertl", title = "Topology Preserving Smoothing of Vector Fields", journal = j-TVCG, volume = "7", number = "3", pages = "222--229", year = "2001", keywords = "vector field methods, ip image processing signal processing, surface processing, ncrr", url = "https://publications.utah.edu/publications/Wes2001a/Westerman-TVCG-2001.pdf", } @InProceedings{SCI:Whi2001a, author = "R.T. Whitaker", title = "Reconstructing Terrain Maps from Dense Range Data", booktitle = c-ICIP, pages = "165--168", year = "2001", month = "October", keywords = "ip image processing signal processing, surface processing, imaging", } @InProceedings{SCI:Whi2001b, author = "R.T. Whitaker and X. Xue", title = "Variable-Conductance, Level-Set Curvature for Image Denoising", booktitle = "{IEEE} International Conference on Image Processing", pages = "142--145", year = "2001", month = "October", keywords = "ip image processing signal processing, segmentation, imaging, level-set methods, level-sets", } @Article{SCI:Xiu2001a, author = "D. Xiu and G.E. Karniadakis", title = "A Semi-Lagrangian High-Order Method for Navier-Stokes Equations", journal = "Journal of Computational Physics", volume = "172", number = "2", pages = "658--684", year = "2001", url = "https://publications.utah.edu/publications/xiu01/Xu_JCP2001.pdf", } @Article{SCI:Yus2001a, author = "P. Yushkevich and S.M. Pizer and S. Joshi and J.S. Marron", title = "Intuitive, Localized Analysis of Shape Variability", journal = "Information Processing in Medical Imaging (IPMI)", pages = "402--408", year = "2001", month = "June", url = "https://publications.utah.edu/publications/yushkevich01/IPMI01-Yushkevich.pdf", } @InProceedings{SCI:Zhu2001, author = "L. Zhukov and D.M. Weinstein and C.R. Johnson and R.S. Macleod", title = "Spatio-temporal Multi-dipole Source Localization Using {ICA} and Lead-Fields in {FEM} Head Models", booktitle = c-EMBS2001, year = "2001", address = "Istanbul, Turkey", month = "Oct", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, scirun, biopse, neuro brain, scientific computing", url = "https://publications.utah.edu/publications/embc01/embc01.pdf", } @Article{SCI:Alt2000a, author = "O. Alter and P.O. Brown and D. Botstein", title = "Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling", title_url = "http://www.alterlab.org/SVD/PNAS_2000/", journal = "Proceedings of the National Academy of Sciences", volume = "97", number = "18", pages = "10101--10106", year = "2000", publisher = "Proceedings of the National Academy of Sciences", month = "August", url = "https://publications.utah.edu/publications/Alt2000a/Alter_PNAS2000.pdf", url = "https://publications.utah.edu/publications/Alt2000a/Alter_PNAS2000-appendix.pdf", } @Article{SCI:Ape2000a, author = "Th. Apel and M. Berzins and P.K. Jimack and G. Kunert and A. Plaks and I. Tsukerman and M. Walkley", title = "Mesh Shape and Anistropic Elements: Theory and Practice", journal = "The Mathematics of Finite Elements and Applications X", pages = "367--376", year = "2000", editor = "J.R. Whiteman", publisher = "Elsevier", keywords = "finite elements, meshing", url = "https://publications.utah.edu/publications/apel00/ABJKPTW99.pdf", } @InCollection{SCI:Ber2000a, author = "M. Berzins and L. Durbeck and P.K. Jimack and M. Walkley", title = "Mesh Quality and Moving and Meshes for 2D and 3D Unstructured Mesh Solvers", booktitle = "Von Karman Institute for Fluid Mechanics 31st Lecture Series on Computational Fluid Mechanics", year = "2000", editor = "N.P. Weatherill and H. Deconinck", publisher = "Von Karman Institute", month = "March", issn = "0377-8312", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, evaporation, atmospherics weather meterology, scientific computing", url = "https://publications.utah.edu/publications/Ber2000a/vki_00.ps", url = "https://publications.utah.edu/publications/Ber2000a/vki_00.pdf", } @Article{SCI:Ber2000b, author = "M. Berzins", title = "An Introduction to Mesh Quality", journal = "Lectures notes for 31st Lecture Series on Computational Fluid Mechanics", pages = "21 pages", year = "2000", editor = "N.P. Weatherill and H. Deconink", institution = "Von Karman Institute for Fluid Mechanics", month = "March", location = "Rhode st Genessee, Brussels, Belgium", issn = "0377-8312", url = "https://publications.utah.edu/publications/berzins00/vkione.pdf", } @Article{SCI:Ber2000d, author = "M. Berzins", title = "Solution-Based Mesh Quality Indicators for Triangular and Tetrahedral Meshes", journal = "International Journal of Computational Geometry and Applications", volume = "10", number = "3", pages = "333-346", year = "2000", month = "June", url = "https://publications.utah.edu/publications/berzins00/CompG.pdf", } @Article{SCI:Ber2000e, author = "M. Berzins", title = "A New Metric for Dynamic Load Balancing", journal = "Applied Mathematical Modelling", volume = "25", pages = "141--151", year = "2000", note = "Special issue on dynamic load balancing", url = "https://publications.utah.edu/publications/berzins00/apmathmodv2.pdf", } @Article{SCI:Ber2000g, author = "M. Berzins", title = "A Data-Bounded Quadratic Interpolant on Triangles and Tetrahedra", journal = "{SIAM} Journal on Scientific Computing", volume = "22", number = "1", pages = "177--197", year = "2000", url = "https://publications.utah.edu/publications/berzins00/finalout.pdf", } @InCollection{SCI:Bra2000a, author = "R. Bramley and C.R. Johnson and D. Gannon and J. Reynders and T. Hewett and J. Rice", title = "Workshop on Scientific Knowledge, Information and Computing, SIDEKIC 98", booktitle = "Enabling Technologies for Computational Science", pages = "19-32", year = "2000", publisher = "Springer", url = "https://publications.utah.edu/publications/Bra2000a/SIDEKIC98.pdf", } @InProceedings{SCI:Bre2000a, author = "J.D. Brederson and M. Ikits and C.R. Johnson and C.D. Hansen and J.M. Hollerbach", title = "The Visual Haptic Workbench", booktitle = "Proceedings of the Fifth PHANToM Users Group Workshop", pages = "46--49", year = "2000", month = "October", keywords = "vr virtual reality haptics, uve, scientific visualization, haptics", url = "https://publications.utah.edu/publications/jdb00/pug00.pdf", url = "https://publications.utah.edu/publications/jdb00/pug00.ps.gz", url = "https://publications.utah.edu/publications/jdb00/pug00.ps", } @Article{SCI:Cse2000a, author = "J.G. Csernansky and L. Wang and S. Joshi and J.P. Miller and M. Gado and D. Kido and D. McKeel and J.C. Morris and M. Miller", title = "Early DAT is Distinguished from Aging by High-Dimensional Mapping of the Hippocampus. Dementia of the Alzheimer Type", journal = "Neurology", volume = "55", number = "11", pages = "1636--1643", year = "2000", month = "December 12", } @Unpublished{SCI:Des2000a, author = "A. Deshmukh and C.C. Douglas and M. Ball and R.E. Ewing and C.R. Johnson and C. Kesselman and C. Lee", title = "Dynamic Data Driven Application Systems: Creating a dynamic and symbiotic coupling of application/simulations with measurements/experiments", year = "2000", editor = "W. Powell, R. Sharpley", publisher = "National Science Foundation", note = "28 pages", url = "https://publications.utah.edu/publications/deshmukh00/NSF_workshop_report_2000.pdf", } @Article{SCI:Due2000a, author = "B.S. Duerstock and C.L. Bajaj and V. Pascucci and D.R. Schikore and K. Lin and R.B. Borgens", title = "Advances in Three-Dimensional Reconstruction of the Experimental Spinal Cord Injury", journal = "Computerized Medical Imaging and Graphics", volume = "24", number = "6", pages = "389--406", year = "2000", } @InProceedings{SCI:For2000a, author = "A. Forsberg and R.M. Kirby and D.H. Laidlaw and G.E. Karniadakis and A. van Dam and J. Elion", title = "Immersive Virtual Reality for Visualizing Flow Through an Artery", booktitle = "Proceedings of {IEEE} Visualization 2000", pages = "457--460", year = "2000", month = "October", location = "Salt Lake City, UT", } @InProceedings{SCI:Ger2000a, author = "J.D. de St. Germain and J. McCorquodale and S.G. Parker and C.R. Johnson", title = "Uintah: A Massively Parallel Problem Solving Environment", booktitle = "Ninth {IEEE} International Symposium on High Performance and Distributed Computing", pages = "33--41", year = "2000", publisher = "{IEEE}, Piscataway, NJ", month = "Nov", keywords = "scirun, uintah, csafe", url = "https://publications.utah.edu/publications/dav00/uintah-hpdc00.pdf", } @Article{SCI:Gho2000a, author = "S. Ghorai and A.S. Tomlin and M. Berzins", title = "Resolution of pollutant concentrations in the boundary layer using a fully 3-D adaptive gridding technique", journal = "Atmospheric Environment", volume = "34", number = "18", pages = "2851-2863", year = "2000", url = "https://publications.utah.edu/publications/ghorai00/atm2000paper.pdf", } @InCollection{SCI:Goo2000a, author = "C.E. Goodyer and R. Fairlie and M. Berzins and L.E. Scales", title = "An In-depth Investigation of the Multigrid Approach to Steady and Transient EHL Problems", booktitle = "Thinning Films and Tribological InterfacesProceedings of the 26th Leeds-Lyon Symposium on Tribology", volume = "38", pages = "95--102", year = "2000", editor = "D. Dowson, M. Priest, C.M. Taylor, P. Ehret, T.H.C. Childs, G. Dalmaz, A.A. Lubrecht, Y. Berthier, L. Flamand and J.-M. Georges", series = "Tribology Series", publisher = "Elsevier", issn = "0167-8922", url = "https://publications.utah.edu/publications/Goo2000a/paper-goodyer.pdf", } @InProceedings{SCI:Goo2000b, author = "C.E. Goodyera and R. Fairliea and M. Berzinsa and L.E. Scales", title = "An in-depth investigation of the multigrid approach to steady and transient EHL problems", title_url = "https://www.scopus.com/record/display.uri?view=basic&eid=2-s2.0-0034350987&origin=resultslist#http://", booktitle = " 26th Leeds-Lyon Symposium on Tribology", volume = "38", pages = "95-102", year = "2000", publisher = "Elsevier", } @Article{SCI:Hog2000a, author = "R.E. Hogan and K.E. Mark and L. Wang and S. Joshi and M.I. Miller and R. Bucholz", title = "Mesial Temporal Sclerosis and Temporal Lobe Epilepsy: MR Imaging Deformation-Based Segmentation of the Hippocampus in Five Patients", journal = "Radiology", volume = "216", number = "1", pages = "291--297", year = "2000", month = "July", } @Article{SCI:Hog2000b, author = "R.E. Hogan and K.E. Mark and I. Choudhuri and L. Wang and S. Joshi and M.I. Miller and R. Bucholz", title = "Magnetic Resonance Imaging Deformation-Based Segmentation of the Hippocampus in Patients with Mesial Temporal Sclerosis and Temporal Lobe Epilepsy", journal = "J Digit Imaging", volume = "13", number = "2 (Suppl. 1)", pages = "217--218", year = "2000", month = "May", } @Article{SCI:Hog2000c, author = "R.E. Hogan and R.D. Bucholz and I. Choudhuri and K.E. Mark and C.S. Butler and S. Joshi", title = "Shape-analysis of hippocampal surface structure in patients with unilateral mesial temporal sclerosis", journal = "Journal of Digital Imaging", volume = "13", number = "2", pages = "39--42", year = "2000", } @TechReport{SCI:Itk2000, author = "M. Ikits", title = "Coregistration of Pose Measurement Devices Using Nonlinear Least Squares Parameter Estimation", number = "UUCS-00-018", year = "2000", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "vr virtual reality haptics, scientific visualization, haptics", url = "https://publications.utah.edu/publications/ikits00/UUCS-00-018.ps", url = "https://publications.utah.edu/publications/ikits00/UUCS-00-018.ps.gz", url = "https://publications.utah.edu/publications/ikits00/UUCS-00-018.pdf", } @InProceedings{SCI:Joh2000b, author = "C.R. Johnson and S.G. Parker and D. Weinstein", title = "Large-Scale Computational Science Applications Using the {SCIR}un Problem Solving Environment", booktitle = c-ISC2000, year = "2000", keywords = "ncrr, scirun, scientific computing, scientific visualization", url = "https://publications.utah.edu/publications/crj00/super00_final.pdf", } @Article{SCI:Jos2001b, author = "S. Joshi and M.I. Miller", title = "Landmark Matching Via Large Deformation Diffeomorphisms", journal = "IEEE Transactions on Image Processing", volume = "9", number = "8", pages = "1357--1370", year = "2000", month = "August", } @Article{SCI:Kin2000, author = "G.L. Kindlmann and D.M. Weinstein and D. Hart", title = "Strategies for Direct Volume Rendering of Diffusion Tensor Fields", journal = j-TVCG, volume = "6", number = "2", pages = "124--138", year = "2000", month = "April-June", keywords = "tensor field methods, diffusion tensor imaging, biopse, ncrr, scientific visualization", url = "https://publications.utah.edu/publications/gk_tvcg00/strategies-tensor.pdf", } @InCollection{SCI:Liv2000, author = "Y. Livnat and S.G. Parker and C.R. Johnson", title = "Fast Isosurface Extraction Methods for Large Image Data Sets", booktitle = "Handbook of Medical Imaging", pages = "731--745", year = "2000", editor = "A.N. Bankman", publisher = "Academic Press", address = "San Diego, CA", month = "Nov", keywords = "scalar field methods, isosurface extraction, remote visualization, remote isosurface visualization, scientific visualization", url = "https://publications.utah.edu/publications/hmip_00/paper_final.ps", url = "https://publications.utah.edu/publications/hmip_00/paper_final.ps.gz", url = "https://publications.utah.edu/publications/hmip_00/paper_final.pdf", } @InProceedings{SCI:Par2000a, author = "S.G. Parker and M. Miller and C.D. Hansen and C.R. Johnson", title = "Computational Steering and the {SCIR}un Integrated Problem Solving Environment", booktitle = "Proceedings of Dagstuhl 1997 Workshop on Scientific Visualization", pages = "257--266", year = "2000", editor = "Hans Hagen and Greg Nielson and Frits Post", note = "Invited and peer reviewed", keywords = "ncrr, scirun", url = "https://publications.utah.edu/publications/sparker00/scivis97.pdf", } @InProceedings{SCI:Pas2000a, author = "V. Pascucci and C.L. Bajaj", title = "Time Critical Isosurface Refinement and Smoothing", booktitle = "Proceedings of the {ACM/IEEE} Volume Visualization and Graphics Symposium 2000", pages = "33--42", year = "2000", month = "October", location = "Salt lake City, Utah", note = "UCRL-JC-139628", } @InProceedings{SCI:Rei2000a, author = "E. Reinhard and B. Smits and C.D. Hansen", title = "Dynamic Acceleration Structures for Interactive Ray Tracing", booktitle = "Proceedings Eurographics Workshop on Rendering", pages = "299--306", year = "2000", month = "June", location = "Brno, Czech Republic", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", url = "https://publications.utah.edu/publications/reinhard00/egwr2k.pdf", url = "https://publications.utah.edu/publications/reinhard00/egwr2k.ps.gz", } @InProceedings{SCI:Rei2000b, author = "E. Reinhard and C.D. Hansen", title = "A Comparison of Parallel Compositing Techniques on Shared Memory Architectures", booktitle = c-EGPGV2000, pages = "115--124", year = "2000", month = "September", location = "Spain", url = "https://publications.utah.edu/publications/reinhard00/Reinhard_pgv2000.pdf", } @Article{SCI:Sch2000a, author = "G. Scheuermann and W. Kollmann and X. Tricoche and T. Wischgoll", title = "Evolution of Topology in Axi-Symmetric and 3D Viscous Flows", journal = "Numerical Simulations of Incompressible Flows", pages = "622--643", year = "2000", publisher = "World Scientific Publishing, New Jersey", url = "https://publications.utah.edu/publications/scheuermann00/evolution.pdf", } @InProceedings{SCI:Sha2000a, author = "A. Shamir and V. Pascucci and C.L. Bajaj", title = "Multi-Resolution Dynamic Meshes with Arbitrary Deformations", booktitle = "Proceedings of {IEEE} Conference on Visualization ({VIS}-00)", pages = "423--430", year = "2000", location = "Salt lake City, Utah", note = "UCRL-JC-139680", } @Article{SCI:Sut2000a, author = "P. Sutton and C.D. Hansen", title = "Accelerated Isosurface Extraction in Time-varying Fields", journal = j-TVCG, volume = "6", number = "2", pages = "98--107", year = "2000", url = "https://publications.utah.edu/publications/sutton00/TVCG-sutton-2000.pdf", } @InProceedings{SCI:Sut2000b, author = "P.M. Sutton and C.D. Hansen and H.W. Shen and D. Schikore", title = "A Case Study of Isosurface Extraction Algorithm Performance", booktitle = c-VISSYM2000, pages = "259--268", year = "2000", month = "May", location = "Amsterdam", keywords = "isosurface extraction", url = "https://publications.utah.edu/publications/sutton00/VisSym-sutton-2000.pdf", } @Article{SCI:Tas2000a, author = "T. Tasdizen and J.-P. Tarel and D.B. Cooper", title = "Improving the Stability of Algebraic Curves for Applications", journal = "IEEE Transactions on Image Processing", volume = "9", number = "3", pages = "405--416", year = "2000", month = "March", url = "https://publications.utah.edu/publications/tolga00/Tasdizen_IEEE_IP_2000.pdf", } @InProceedings{SCI:Tas2000b, author = "T. Tasdizen and D.B. Cooper", title = "Boundary Estimation from Intensity/Color Images with Algebraic Curve Models", booktitle = "Proceedings 15th International Conference on Pattern Recognition. ICPR-2000", year = "2000", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tas2000b/Tasdizen_ICPR00.pdf", } @Article{SCI:Tom2000a, author = "A.S. Tomlin and S. Ghorai and G. Hart and M. Berzins", title = "3-D Adaptive Unstructured Meshes in Air Pollution Modelling", journal = "Environmental Modeling and Software", volume = "15", number = "4", pages = "681--692", year = "2000", url = "https://publications.utah.edu/publications/tomlin00/EnvModSoft15.pdf", } @Article{SCI:Tou2000a, author = "N. Touheed and P. Selwood and P.K. Jimack and M. Berzins", title = "A Comparison of Some Dynamic Load Balancing Algorithms for a Parallel Adaptive Flow Solver", journal = "Parallel Computing", volume = "26", number = "12", pages = "1535--1554", year = "2000", url = "https://publications.utah.edu/publications/touheed00/TSJB99.pdf", } @Article{SCI:Tri2000a, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "Higher Order Singularities in Piecewise Linear Vector Fields", journal = "The Mathematics of Surfaces IX", pages = "99--113", year = "2000", publisher = "Springer, London", url = "https://publications.utah.edu/publications/tricoche00/higher.pdf", } @InProceedings{SCI:Tri2000b, author = "X. Tricoche and G. Scheuermann and H. Hagen", title = "A Topology Simplification Method for 2D Vector Fields", booktitle = "Proceedings of {IEEE} Visualization 2000", pages = "359--366", year = "2000", url = "https://publications.utah.edu/publications/tricoche00/scaling2.pdf", } @Article{SCI:Van2000a, author = "D.C. Van Essen and H.A. Drury and S. Joshi and M. Miller", title = "Functional and Structural Mapping of Human Cerebral Cortex: Solutions are in the Surfaces", journal = "Adv Neurol", volume = "84", pages = "23--34", year = "2000", } @TechReport{SCI:Wei2000a, author = "D.M. Weinstein and L. Zhukov and G. Potts", title = "Localization of Multiple Deep Epileptic Sources in a Realistic Head Model via Independent Component Analysis", number = "UUCS-2000-004", year = "2000", institution = "University of Utah", type = "School of Computing Technical Report", month = "February", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scirun, biopse, neuro brain, ncrr, scientific computing, scientific visualization, pse, problem solving environments", url = "https://publications.utah.edu/publications/dmw00/UUCS-2000-004.pdf", } @Article{SCI:Wei2000b, author = "D.M. Weinstein and L. Zhukov and C.R. Johnson", title = "Lead-Field Bases for {EEG} Source Imaging", journal = j-ABE, volume = "28", number = "9", pages = "1059--1065", year = "2000", month = "Sep", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scirun, biopse, scientific computing, pse, problem solving environments", url = "https://publications.utah.edu/publications/dmw00/abme00-dmw.pdf", } @InProceedings{SCI:Wei2000c, author = "D. Weinstein", title = "Scanline Surfacing: Building Separating Surfaces from Planar Contours", booktitle = c-VIS2000, pages = "283--289", year = "2000", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, ip image processing signal processing, surface processing, scirun, biopse", url = "https://publications.utah.edu/publications/dmw00/vis00.dmw.pdf", } @InProceedings{SCI:Wei2000d, author = "D.M. Weinstein and L. Zhukov and C.R. Johnson", title = "An Inverse {EEG} Problem Solving Environment and its Applications to {EEG} Source Localization", booktitle = "NeuroImage (suppl.)", pages = "921", year = "2000", keywords = "scirun, eeg, forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, biopse, neuro brain, ncrr", url = "https://publications.utah.edu/publications/dmw00/hbm00-dmw.ps", url = "https://publications.utah.edu/publications/dmw00/hbm00-dmw.ps.gz", url = "https://publications.utah.edu/publications/dmw00/hbm00-dmw.pdf", } @InProceedings{SCI:Wei2000e, author = "M. Weiler and R. Westermann and C.D. Hansen and K. Zimmerman and T. Ertl", title = "Level-Of-Detail Volume Rendering via 3D Textures", booktitle = c-VVIS2000, pages = "7--13", year = "2000", month = "October", location = "SLC, Utah", url = "https://publications.utah.edu/publications/weiler00/IEEE-VolVis-2000.pdf", } @InProceedings{SCI:Wei2000f, author = "D.M. Weinstein and L. Zhukov and C.R. Johnson and S.G. Parker and R. Van Uitert and R.S. MacLeod and C.D. Hansen", title = "Interactive Source Imaging with Bio{PSE}", booktitle = "Chicago 2000 World Congress on Medical Physics and Biomedical Engineering", year = "2000", month = "July", location = "Chicago, IL.", note = "Refereed abstract.", keywords = "ncrr", } @InProceedings{SCI:Wei2000g, author = "D.M. Weinstein and P. Krysl and C.R. Johnson", title = "The Bio{PSE} Inverse {EEG} Modeling Pipeline", booktitle = "ISGG 7th International Conference on Numerical Grid Generation in Computation Field Simulations", pages = "1091--1100", year = "2000", publisher = "The International Society of Grid Generation", address = "Mississippi State University", keywords = "forward problems inverse problems forward simulation inverse solutions, inverse eeg, scirun, biopse, ncrr", url = "https://publications.utah.edu/publications/dmw00/icng00.pdf", } @InProceedings{SCI:Wes2000, author = "R. Westermann and C.R. Johnson and T. Ertl", title = "A Level-Set Method for Flow Visualization", booktitle = c-VIS2000, pages = "147--154", year = "2000", publisher = "{IEEE} Computer Society", address = "Salt Lake City", keywords = "cfd computational fluid dynamics, computational mechanics, fluid structure problems, ip image processing signal processing, segmentation, level-set methods, level-sets", url = "https://publications.utah.edu/publications/westermann00/vis00.crj.pdf", } @TechReport{SCI:Zhu2000a, author = "L. Zhukov and D. Weinstein and C.R. Johnson", title = "Statistical Analysis For {FEM} {EEG} Source Localization in Realistic Head Models", number = "UUCS-2000-003", year = "2000", institution = "University of Utah", type = "School of Computing Technical Report", month = "February", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scirun, biopse, ncrr", url = "https://publications.utah.edu/publications/zhukov00/UUCS-2000-003.pdf", } @InProceedings{SCI:Zhu2000b, author = "L. Zhukov and D.M. Weinstein and C.R. Johnson", title = "Reciprocity Basis for {EEG} Source Imaging", booktitle = "NeuroImage (suppl.)", pages = "598", year = "2000", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scirun", url = "https://publications.utah.edu/publications/zhukov00/hbm00-lz.ps", url = "https://publications.utah.edu/publications/zhukov00/hbm00-lz.ps.gz", url = "https://publications.utah.edu/publications/zhukov00/hbm00-lz.pdf", } @Article{SCI:Zhu2000c, author = "L. Zhukov and D. Weinstein and C.R. Johnson", title = "Independent Component Analysis for {EEG} Source Localization in Realistic Head Models", journal = "IEEE Engineering in Medicine and Biology", volume = "19", number = "3", pages = "87--96", year = "2000", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scirun, ncrr", url = "https://publications.utah.edu/publications/zhukov00/ieee_emb99.pdf", } @Article{SCI:Alt1999a, author = "O. Alter and Y. Yamamoto", title = "Fundamental Quantum Limit to External Force Detection via Monitoring a Single Harmonic Oscillator or Free Mass", journal = "Physics Letters A", volume = "236", number = "4-6", pages = "226--231", year = "1999", url = "https://publications.utah.edu/publications/alter99/Alter_PhysLettersA1999.pdf", } @InProceedings{SCI:Arm99a, author = "R. Armstrong and D. Gannon and A. Geist and K. Keahey and S. Kohn and L. McInnes and S.G. Parker and B. Smolinksi", title = "Toward a Common Component Architecture for High-Performance Scientific Computing", booktitle = "Proceedings of the 8th {IEEE} International Symposium on High Performance Distributed Computation ({HPDC})", year = "1999", month = "August", keywords = "scirun, CCA", url = "https://publications.utah.edu/publications/hpdc99/cca.ps.gz", url = "https://publications.utah.edu/publications/hpdc99/cca.pdf", } @Article{SCI:Baj1999a, author = "C.L. Bajaj and C. Baldazzi and S. Cutchin and A. Paoluzzi and V. Pascucci and M. Vicentino", title = "A Programming Approach for Complex Animations", journal = "Computer Aided Design", volume = "31", number = "11", pages = "695--710", year = "1999", } @Article{SCI:Baj1999b, author = "C.L. Bajaj and V. Pascucci and G. Zhuang", title = "Single Resolution Compression of Arbitrary Triangular Meshes with Properties", journal = "Computational Geometry: Theory and Applications", volume = "14", number = "1--3", pages = "167--186", year = "1999", issn = "0925-7721", } @InBook{SCI:Baj1999c, author = "C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "Data Visualization Techniques", volume = "6", pages = "31--47", year = "1999", chapter = "3: Accelerated IsoContouring of Scalar Fields", series = "Trends in Software", publisher = "John Wiley & Sons", } @InProceedings{SCI:Baj1999d, author = "C.L. Bajaj and V. Pascucci and G. Zhuang", title = "Progressive Compression and Transmission of Arbitrary Triangular Meshes", booktitle = "Proceedings of the 10th Annual {IEEE} Conference on Visualization ({VIS}-99)", pages = "307--316", year = "1999", month = "October 24-29", location = "San Francisco, CA", } @InProceedings{SCI:Baj1999e, author = "C.L. Bajaj and V. Pascucci and D. Thompson and X.Y. Zhang", title = "Parallel Accelerated Isocontouring for Out-Of-Core Visualization", booktitle = "Proceedings of First Parallel Visualization and Graphics Symposium 1999", year = "1999", organization = "IEEE Computer Society", month = "October", location = "San Francisco, CA", } @InProceedings{SCI:Baj1999f, author = "C.L. Bajaj and V. Pascucci and G. Zhuang", title = "Single Resolution Compression of Arbitrary Triangular Meshes with Properties", booktitle = "Proceedings of DCC: Data Compression Conference 1999", year = "1999", organization = "IEEE Computer Society", address = "Snowbird, Utah", month = "March", } @InProceedings{SCI:Baj1999g, author = "C.L. Bajaj and S. Cutchin and V. Pascucci and A. Paoluzzi and C. Morgia", title = "Web Based Collaborative {CAAD}", booktitle = "Proceedings of the 5th Symposium on Solid Modeling and Applications", year = "1999", } @InProceedings{SCI:Baj1999h, author = "C. Bajaj and V. Pascucci and E. Petajan and G. Zhuang", title = "Polygonal Model Coding Evaluation for Low bit-rate Communication", booktitle = "Proceedings of the International Workshop on Synthetic - Natural Hybrid Coding and Three Dimensional Imaging", year = "1999", month = "September", } @InProceedings{SCI:Ber1999a, author = "M. Berzins and L.J.K. Durbeck", title = "Unstructured Mesh Methods Applied to Hyperbolic {PDE}s with Source Terms: Error Estimates and Mesh Quality", booktitle = "Godunov Methods: Theory and Applications Conference and Short Course", year = "1999", publisher = "Oxford. numeritek Ltd.URL", month = "October", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, evaporation, scirun, atmospherics weather meterology", url = "https://publications.utah.edu/publications/berzins99/unstructured-mesh-methods-applied.pdf", } @Article{SCI:Ber1999c, author = "M. Berzins and J. Nash and P. Selwood", title = "Parallel Solution of Reacting Flow Problems using Unstructured Tetrahedral Meshes", journal = "Proceedings of 9th {SIAM} Parallel Processing for Scientific Computing", year = "1999", location = "Philadelphia, PA", isbn = "0-89871-435-4", url = "https://publications.utah.edu/publications/Ber1999c/Berzins_PPSC1999.pdf", } @InCollection{SCI:Ber1999e, author = "M. Berzins", title = "A Solution Based H1 Norm Triangular Mesh Quality Indicator", booktitle = "Grid Generation and Adaptive Algorithms", booktitle_url = "http://www.springer.com/us/book/9781461271918", pages = "77-88", year = "1999", editor = "Marshal W. Bern, Joseph E. Flaherty, Mitchell Luskin", publisher = "Springer", url = "https://publications.utah.edu/publications/Ber1999e/2210_001.pdf", } @Article{SCI:Ber99d, author = "M. Berzins", title = "Mesh Quality - Geometry, Error Estimates or Both?", journal = "Engineering and Computers", volume = "15", pages = "236--247", year = "1999", url = "https://publications.utah.edu/publications/berzins99/MESHQUALITY.pdf", url = "https://publications.utah.edu/publications/berzins99/Engwcomp.pdf", } @Unpublished{SCI:Bot1999a, author = "D. Botstein and L. Smarr and D. Agard and M. Levitt and D. Lippman and D. Herrington and C.R. Johnson and G Rose and G. Rubin and A. Levison and M. Spence and H. Smith and C. Peskin and G. Jacobs", title = "{NIH} Biomedical Information Science and Technology Initiative ({BISTI})", year = "1999", publisher = "National Institutes of Health", month = "July", note = "Prepared by the Working Group on Biomedical Computing Advisory Committee to the Director", url = "https://publications.utah.edu/publications/botstein99/BISTI_1999.pdf", } @TechReport{SCI:Bre99, author = "J.D. Brederson", title = "The I3Stick: An Inexpensive, Immersive, Interaction Device", number = "UUCS-99-014", year = "1999", institution = "University of Utah", type = "School of Computing Technical Report", month = "November", keywords = "vector field methods, vr virtual reality haptics", url = "https://publications.utah.edu/publications/jdb99/UUCS-99-016.ps", url = "https://publications.utah.edu/publications/jdb99/UUCS-99-016.ps.gz", url = "https://publications.utah.edu/publications/jdb99/UUCS-99-016.pdf", } @Article{SCI:Bro1999a, author = "D.H. Brooks and G.F. Ahmad and R.S. MacLeod and G.M. Maratos", title = "Inverse Electrocardiography by Simultaneous Imposition of Multiple Constraints", journal = j-BME, volume = "46", number = "1", pages = "3--18", year = "1999", keywords = "forward problems inverse problems forward simulation inverse solutions, cardiac heart, ncrr", url = "https://publications.utah.edu/publications/brooks99/brooks-tmbe-1999.pdf", } @Article{SCI:Chi1999a, author = "T.H.C. Childs and M. Berzins and G.R. Ryder and A. Towtoni", title = "Selective Laser Sintering of an Amorphous Polymer-Simulations and Experiments", journal = "Proceedings of the Institution of Mechanical Engineers Part B: Journal of Engineering Manufacture", volume = "213", number = "B4", pages = "333--349", year = "1999", url = "https://publications.utah.edu/publications/Chi1999a/RyderChildsBerzinsTowtoni.pdf", } @InProceedings{SCI:Dur99c, author = "L. Durbeck", title = "Evaporation: A Technique for Visualizing Mesh Quality", booktitle = "8th International Meshing Roundtable", pages = "259--265", year = "1999", organization = "Sandia National Laboratories", month = "Oct", keywords = "computational pde pdes computational partial differential equations evaporation, evaporation, scirun, atmospherics weather meterology", url = "https://publications.utah.edu/publications/ldurbeck/roundtable.ps.gz", url = "https://publications.utah.edu/publications/ldurbeck/roundtable.ps", url = "https://publications.utah.edu/publications/ldurbeck/roundtable.pdf", url = "https://publications.utah.edu/publications/ldurbeck/evap.zip", } @InProceedings{SCI:Gue1999a, author = "C. Guerra and V. Pascucci", title = "On Matching Sets of {3D} Segments", booktitle = "Proceedings of SPIE Vision Geometry VIII", pages = "157-167", year = "1999", address = "Denver, USA", } @InProceedings{SCI:Gue1999b, author = "C. Guerra and V. Pascucci", title = "{3D} Segment Matching Using the Hausdorff Distance", booktitle = "Proceedings of the {IEEE} Conference on Image Processing and its Applications, IPA99", pages = "18--22", year = "1999", } @InProceedings{SCI:Gue1999c, author = "C. Guerra and V. Pascucci", title = "Segment Matching for Protein Secondary Structure Comparison", booktitle = "Proceedings of the Third International Conference on Computational Molecular Biology, {RECOMB}'99", pages = "30", year = "1999", organization = "ACM", address = "Lyon, France", } @InProceedings{SCI:Han99a, author = "C.D. Hansen and T. Udeshi and S.G. Parker and P. Shirley", title = "Parallel Methods for Isosurface Visualization", booktitle = "Ninth {SIAM} Conference on Parallel Processing for Scientific Computing", year = "1999", note = "extended abstract", keywords = "isosurface extraction, parallel visualization", url = "https://publications.utah.edu/publications/siam99/siam99a.ps.gz", url = "https://publications.utah.edu/publications/siam99/siam99a.ps", } @Article{SCI:Hog1999a, author = "R.E. Hogan and K.E. Mark and L. Wang and S.C. Joshi and M.I. Miller and R.D. Bucholz", title = "MR Imaging Deformation-Based Segmentation of the Hippocampus in Patients with Mesial Temporal Sclerosis and Temporal Lobe Epilepsy", journal = "Epilepsia", volume = "40", number = "7", year = "1999", } @InProceedings{SCI:Joh99b, author = "C.R. Johnson and S.G. Parker", title = "The {SCIR}un Parallel Scientific Computing Problem Solving Environment", booktitle = "Ninth {SIAM} Conference on Parallel Processing for Scientific Computing", year = "1999", keywords = "scirun, problem solving environments, pse", url = "https://publications.utah.edu/publications/siam99/siam99b.ps.gz", url = "https://publications.utah.edu/publications/siam99/siam99b.ps", } @Article{SCI:Joh99c, author = "C.R. Johnson and S.G. Parker and C.D. Hansen and G.L. Kindlmann and Y. Livnat", title = "Interactive Simulation and Visualization", journal = "{IEEE} Computer", volume = "32", number = "12", pages = "59--65", year = "1999", month = "Dec", keywords = "ncrr, scalar field methods, volume rendering, transfer functions, scirun, biopse, uintah", url = "https://publications.utah.edu/publications/ieee_computer99/ieee_computer99.ps.gz", url = "https://publications.utah.edu/publications/ieee_computer99/ieee_computer99.pdf", } @Article{SCI:Jos1999a, author = "M. Joshi and J. Cui and K. Doolittle and S. Joshi and D.C. Van Essen and L. Wang and M. Miller", title = "Brain Segmentation and the Generation of Cortical Surfaces", journal = "Neuroimage", volume = "9", number = "5", pages = "461--476", year = "1999", month = "May", } @InProceedings{SCI:Kar1999a, author = "G.-S. Karamanos and C. Evangelinos and R.C. Boes and R.M. Kirby and G.E. Karniadakis", title = "Direct Numerical Simulation of Turbulence with a PC/Linux Cluster: Fact or Fiction?", booktitle = "Proceedings of SuperComputing 1999", year = "1999", month = "November", location = "Portland, OR", } @InProceedings{SCI:Kin99, author = "G.L. Kindlmann and D.M. Weinstein", title = "Hue-Balls and Lit-Tensors for Direct Volume Rendering of Diffusion Tensor Fields", booktitle = "Proceedings of the {IEEE} Visualization 99", pages = "183--189", year = "1999", keywords = "scalar field methods, volume rendering, transfer functions, tensor field methods, diffusion tensor imaging, scientific visualization", url = "https://publications.utah.edu/publications/gk99/vis99_hueballs-paper.ps.gz", url = "https://publications.utah.edu/publications/gk99/vis99_hueballs-paper.ps", url = "https://publications.utah.edu/publications/gk99/vis99_hueballs-paper.pdf", } @Article{SCI:Kir1999a, author = "R.M. Kirby and T.C. Warburton and I. Lomtev and G.E. Karniadakis", title = "A Discontinuous Galerkin Spectral/hp Method on Hybrid Grids", journal = "Journal of Applied Numerical Mathematics", volume = "33", pages = "393--405", year = "1999", } @InProceedings{SCI:Kir1999b, author = "R.M. Kirby and H. Marmanis and D.H. Laidlaw", title = "Visualizing Multivalued Data from 2D Incompressible Flows Using Concepts from Painting", booktitle = "Proceedings of IEEE Visualization 1999", pages = "333--340", year = "1999", month = "October", location = "San Francisco, CA", } @TechReport{SCI:Liv99a, author = "Y. Livnat", title = "{NOISE}, {WISE} and {SAGE}: Algorithms for Rapid Isosurface Extraction", number = "UUSCI-1999-001", year = "1999", institution = "University of Utah", type = "{SCI} Institute Technical Report", month = "December", keywords = "scalar field methods, isosurface extraction", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-1999-001.pdf", } @Article{SCI:Lom1999a, author = "I. Lomtev and R.M. Kirby and G.E. Karniadakis", title = "A Discontinuous Galerkin ALE Method for Compressible Viscous Flows in Moving Domains", journal = "Journal of Computational Physics", volume = "155", pages = "128--159", year = "1999", } @Article{SCI:Mcc99a, author = "P. McCormick and C.D. Hansen and E. Angel", title = "The Deferred Accumulation Buffer", journal = "Journal for Graphics Tools", volume = "4", number = "3", pages = "35--46", year = "1999", } @InProceedings{SCI:Mil1999a, author = "M. Miller and C.D. Hansen and C.R. Johnson", title = "The {SCIR}un Problem Solving Environment: Implementation within a Distributed Environment", booktitle = "Ninth {SIAM} Conference on Parallel Processing for Scientific Computing", year = "1999", note = "extended abstract", keywords = "scirun, ncrr", url = "https://publications.utah.edu/publications/siam99/siam99c.pdf", } @Article{SCI:Mil1999b, author = "M.I. Miller and S.C. Joshi and G.E. Christensen", title = "Large Deformation Fluid Diffeomorphisms For Landmark and Image Matching", journal = "Brain Warping", pages = "115--131", year = "1999", editor = "A. W. Toga and John Mazziotta", } @Article{SCI:Nas1999a, author = "J. Nash and P. Dew and M. Berzins", title = "Using SADTs to Support Irregular Computational Problems", journal = "International Symposium on Parallel Architectures, Algorithms, and Networks", pages = "338--344", year = "1999", publisher = "IEEE Computer Society", address = "Los Alamitos, CA, USA", issn = "1087-4089", url = "https://publications.utah.edu/publications/nash99/NASHDEWMB99.pdf", } @InCollection{SCI:Nas1999b, author = "J. Nash and M. Berzins and P. Selwood", title = "A Structured SADT Approach to the Support of a Parallel Adaptive 3D CFD Code", booktitle = "Euro-Par'99 Parallel Processing", pages = "651--658", year = "1999", publisher = "Springer Nature", url = "https://publications.utah.edu/publications/Nas1999b/4609_001.pdf", } @Article{SCI:Nur1999a, author = "E.M. Nurgat and M. Berzins and L.E. Scales", title = "Solving {EHL} Problems Using Iterative Multigrid and Homotopy Methods", journal = "{ASME} Journal of Tribology", volume = "121", pages = "28--34", year = "1999", month = "January", url = "https://publications.utah.edu/publications/Nur1999a/Nurgat_JTribio1999.pdf", } @Article{SCI:Par99a, author = "S.G. Parker and M. Parker and Y. Livnat and P.P. Sloan and C.D. Hansen and P. Shirley", title = "Interactive Ray Tracing for Volume Visualization", journal = "{IEEE} Transactions on Visualization and Computer Graphics", volume = "5", number = "3", pages = "238--250", year = "1999", month = "July-September", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, visible human, scientific visualization", url = "https://publications.utah.edu/publications/ieee_tvcg99/tvcg99.ps.gz", url = "https://publications.utah.edu/publications/ieee_tvcg99/tvcg99.pdf", } @InProceedings{SCI:Par99b, author = "S.G. Parker and P. Shirley and Y. Livnat and C.D. Hansen and P.-P. Sloan and M. Parker", title = "Interacting with Gigabyte Volume Datasets on the Origin 2000", booktitle = "The 41st Annual Cray User's Group Conference", year = "1999", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", url = "https://publications.utah.edu/publications/sparker99/rtrt.ps.gz", url = "https://publications.utah.edu/publications/sparker99/rtrt.pdf", } @InProceedings{SCI:Par99c, author = "S.G. Parker and W. Martin and P.-P. Sloan and P. Shirley and B. Smits and C.D. Hansen", title = "Interactive Ray Tracing", booktitle = "Symposium on Interactive 3D Graphics: Interactive 3D", pages = "119--126", year = "1999", month = "April 26-28", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", url = "https://publications.utah.edu/publications/sparker99/rtrt.pdf", url = "https://publications.utah.edu/publications/sparker99/rtrt.ps.gz", } @Article{SCI:Ric1999a, author = "M. Richards and N.A. Waanders and J.A. Weiss and V. Bhatia and L.E. Senunas and M.B. Schaffler and S.A. Goldstein and J.A. Goulet", title = "Reduced Gap Strains Induce Changes in Bone Regeneration During Distraction", journal = "Journal of Biomechanical Engineering", volume = "121", pages = "348--355", year = "1999", } @InProceedings{SCI:Sch1999a, author = "G. Scheuermann and X. Tricoche and H. Hagen", title = "C1-Interpolation for Vector Field Topology Visualization", booktitle = "Proceeding IEEE Visualization 1999", pages = "271--278", year = "1999", url = "https://publications.utah.edu/publications/scheuermann99/interpolation.pdf", } @Article{SCI:Sel99a, author = "P. Selwood and M. Berzins", title = "Portable Parallel Adaptation of Unstructured Tetrahedral Meshes", journal = "Concurrency", volume = "11", number = "13", pages = "1--22", year = "1999", url = "https://publications.utah.edu/publications/selwood99/concur99.pdf", } @InProceedings{SCI:Slo99, author = "P.P. Sloan and C.D. Hansen", title = "Parallel Lumigraph Reconstruction", booktitle = "Parallel Visualization and Graphics Symposium 1999", pages = "7--14", year = "1999", month = "October", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, rtrt, scientific visualization", url = "https://publications.utah.edu/publications/sloan99/pvg99.ps.gz", url = "https://publications.utah.edu/publications/sloan99/pvg99.ps", } @InProceedings{SCI:Sut99, author = "P. Sutton and C.D. Hansen", title = "Isosurface Extraction in Time-varying Fields Using a Temporal Branch-on-Need Tree ({T-BON})", booktitle = "{IEEE} Visualization 1999", pages = "147--153", year = "1999", month = "Oct", keywords = "scalar field methods, isosurface extraction, scientific visualization", url = "https://publications.utah.edu/publications/sutton99/vis99-tbon.ps.gz", url = "https://publications.utah.edu/publications/sutton99/vis99-tbon.ps", } @InProceedings{SCI:Tas1999a, author = "T. Tasdizen and J.-P. Tarel and D. B. Cooper", title = "Algebraic curves that work better", booktitle = "Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition", year = "1999", publisher = "IEEE", url = "https://publications.utah.edu/publications/Tas1999a/Tasdizen_CVPR99.pdf", } @Article{SCI:Tom1999a, author = "A. Tomlin and S. Ghorai and G. Hart and M. Berzins", title = "3D adaptive unstructured meshes for air pollution modelling", journal = "Environmental Management and Health", volume = "10", number = "4", pages = "267-275", year = "1999", url = "https://publications.utah.edu/publications/Tom1999a/2458_001.pdf", } @InProceedings{SCI:Ude99, author = "T. Udeshi and C.D. Hansen", title = "Towards Interactive Photo-Realistic Rendering of Indoor Scenes: A Hybrid Approach", booktitle = "Proceedings of the Tenth Eurographics Workshop on Rendering", pages = "63--76", year = "1999", month = "June", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, rtrt, scientific visualization", url = "https://publications.utah.edu/publications/udeshi99/rw99.ps.gz", url = "https://publications.utah.edu/publications/udeshi99/rw99.ps", } @InProceedings{SCI:Ude99b, author = "T. Udeshi and C.D. Hansen", title = "Parallel Multipipe Rendering for Very Large Isosurface Visualization", booktitle = "Joint {EUROGRAPHICS} - {IEEE} TCCG Symposium on Visualization", year = "1999", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", url = "https://publications.utah.edu/publications/udeshi99/vissym99.ps.gz", url = "https://publications.utah.edu/publications/udeshi99/vissym99.ps", } @InProceedings{SCI:Wal99, author = "B. Walter and G. Drettakis and S.G. Parker", title = "Interactive Rendering Using the Render Cache", booktitle = "Rendering techniques '99 (Proceedings of the10thEurographics Workshop on Rendering)", volume = "10", pages = "235--246", year = "1999", publisher = "Springer-Verlag/Wien", address = "New York", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", url = "https://publications.utah.edu/publications/egrw99/render-cache.pdf", } @Article{SCI:Wal99a, author = "M. Walkley and M. Berzins", title = "A finite element model for the one-dimensional extended Boussinesq equations", journal = "International Journal for Numerical Methods in Fluids", volume = "29", pages = "143--157", year = "1999", url = "https://publications.utah.edu/publications/walkley99/MW_MB_IJNMF_1999.pdf", } @Article{SCI:Wei1999a, author = "J.A. Weiss and L.E. Paulos", title = "Mechanical Testing of Ligament Fixation Devices", journal = "Techniques in Orthopaedics", volume = "14", number = "1", pages = "14--21", year = "1999", url = "https://publications.utah.edu/publications/weiss99/lepbc_final.pdf", } @InProceedings{SCI:Wei1999b, author = "D.M. Weinstein and G. Kindlmann and E. Lundberg", title = "Tensorlines: Advection-Diffusion Based Propagation Through Diffusion Tensor Fields", booktitle = "{IEEE} Visualization", pages = "249--253", year = "1999", keywords = "tensor field methods, diffusion tensor imaging, scientific visualization", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-colorplate.ps", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-colorplate.ps.gz", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-paper.pdf", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-paper.ps", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-paper.ps.gz", url = "https://publications.utah.edu/publications/dmw99/vis99_tensorlines-colorplate.pdf", } @TechReport{SCI:Wei1999c, author = "D.M. Weinstein and L. Zhukov and C.R. Johnson", title = "Lead Field Basis for {FEM} Source Localization", number = "UUCS-99-014", year = "1999", institution = "University of Utah", type = "School of Computing Technical Report", address = "Salt Lake City, UT", month = "October", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, scientific computing", url = "https://publications.utah.edu/publications/dmw99/UUCS-99-014.pdf", url = "https://publications.utah.edu/publications/dmw99/UUCS-99-014.ps.gz", url = "https://publications.utah.edu/publications/dmw99/UUCS-99-014.ps", } @TechReport{SCI:Wei1999d, author = "D.M. Weinstein and G. Kindlmann and E. Lundberg", title = "Stream Bundles - Cohesive Advection through Flow Fields", number = "UUCS-99-005", year = "1999", institution = "School of Computing", type = "University of Utah Technical Report", url = "https://publications.utah.edu/publications/dmw99/UUCS-99-005.pdf", } @InProceedings{SCI:Zhu99a, author = "L. Zhukov and D.M. Weinstein and C.R. Johnson", title = "Independent Component Analysis For {EEG} Source Localization In Realistic Head Models", booktitle = "Third International Conference on Inverse Problems in Engineering", year = "1999", keywords = "ncrr, forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scirun", url = "https://publications.utah.edu/publications/zhukov99/ieee_emb99.ps.gz", url = "https://publications.utah.edu/publications/zhukov99/ieee_emb99.ps", url = "https://publications.utah.edu/publications/zhukov99/ieee_emb99.pdf", } @Article{SCI:Alt1998a, author = "O. Alter and Y. Yamamoto", title = "Impossibility of Determining the Unknown Wavefunction of a Single Quantum System: Quantum Non-Demolition Measurements, Measurements without Entanglement and Adiabatic Measurements", journal = "Fortschritte der Physik", volume = "46", number = "6-8", pages = "817--827", year = "1998", month = "November", url = "https://publications.utah.edu/publications/Alt1998a/Alter_Fortchritte1998.pdf", } @InProceedings{SCI:Baj1998a, author = "C.L. Bajaj and V. Pascucci and R.J. Holt and A.N. Netravali", title = "Dynamic Maintenance and Visualization of Molecular Surfaces", booktitle = "Proceedings of the 10th Canadian Conference on Computational Geometry ({CCCG})", pages = "68--69", year = "1998", editor = "Mike Soss", publisher = "School of Computer Science, McGill University", month = "August", location = "Montreal, Quebec, Canada", } @InProceedings{SCI:Baj1998b, author = "C.L. Bajaj and V. Pascucci and G. Rabbiolo and D.R. Schikore", title = "Hypervolume Visualization: A Challenge in Simplicity", booktitle = "Proceedings of the 1998 {IEEE} Symposium on Volume Visualization", pages = "95--102", year = "1998", } @InProceedings{SCI:Baj1998c, author = "C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "Visualization of Scalar Topology for Structural Enhancement", booktitle = "Proceedings of the 9th Annual {IEEE} Conference on Visualization ({VIS}-98)", pages = "51--58", year = "1998", organization = "IEEE Computer Society", address = "New York", month = "October", isbn = "1-58113-106-2", } @Article{SCI:Ber98b, author = "M. Berzins and P.J. Capon and P.K. Jimack", title = "On Spatial Adaptivity and Interpolation When Using the Method of Lines", journal = "Applied Numerical Mathematics", volume = "26", pages = "117--134", year = "1998", url = "https://publications.utah.edu/publications/berzins98/berzins91spatial.pdf", } @Article{SCI:Ber98c, author = "M. Berzins", title = "A Solution-Based Triangular and Tetrahedral Mesh Quality Indicator", journal = "{SIAM} Journal on Scientific Computing", volume = "19", pages = "2051--2060", year = "1998", url = "https://publications.utah.edu/publications/berzins98/SISC19.pdf", } @Article{SCI:Ber98d, author = "M. Berzins and R. Fairlie and S.V. Pennington and J.M. Ware and L.E. Scales", title = "{SPRINT2D}: Adaptive Software for {PDE}s", journal = "{ACM} Transactions on Mathematical Software", volume = "24", number = "4", pages = "475--499", year = "1998", month = "December", keywords = "computational pde pdes computational partial differential equations", url = "https://publications.utah.edu/publications/berzins98/berzins98sprintd.pdf", } @InProceedings{SCI:Bow1998a, author = "A.E. Bowden and R.D. Rabbitt and J.A. Weiss", title = "Anatomical Registration and Segmentation by Warping Template Finite Element Models", booktitle = "Proc. {SPIE} (Laser-Tissue Interaction IX)", volume = "3254", pages = "469--476", year = "1998", url = "https://publications.utah.edu/publications/bowden98/spie98_anton.pdf", } @InProceedings{SCI:Cse1998a, author = "J.C. Csernansky and S. Joshi and L. Wang and M. Gado and J.P. Miller and U. Grenander and M.I. Miller", title = "Hippocampal Morphometry in Schizophrenia by High Dimensional Brain Mapping", booktitle = "Proceedings of the National Academy of Science", volume = "95", pages = "11406--11411", year = "1998", month = "September", } @InProceedings{SCI:Dur98a, author = "L.J.K Durbeck and N.J. Macias and D.M. Weinstein C.R. and J.M. Hollerbach", title = "{SCIR}un/Haptic Display for Flow Fields", booktitle = "Proceedings of the Third {PHANTOM} Users Group Workshop", pages = "71--75", year = "1998", editor = "J.K. Salisbury and M.A. Srinivasan", series = "AI Lab Technical Report No. 1643 and {RLE} Technical Report No. 624", month = "Dec", keywords = "scirun, haptic, visual haptic workbench, vr virtual reality haptics", url = "https://publications.utah.edu/publications/ldurbeck/pug98.pdf", url = "https://publications.utah.edu/publications/ldurbeck/pug98.ps.gz", url = "https://publications.utah.edu/publications/ldurbeck/pug98.ps", } @Article{SCI:Han98a, author = "C.D. Hansen", title = "{EUROGRAPHICS} '97 Conference Report", journal = "Computer Graphics Quarterly", volume = "32", number = "1", pages = "39", year = "1998", month = "February", } @Article{SCI:Han98b, author = "C.D. Hansen", title = "{EUROGRAPHICS} '97: Budapest, Hungary, September 4-8, 1997: Meeting Report", journal = "Computer Graphics Forum", volume = "16", number = "5", pages = "323--324", year = "1998", month = "February", } @Article{SCI:Har1998a, author = "G. Hart and A. Tomlin and J. Smith and M. Berzins", title = "Multi-scale Atmospheric Dispersion Modelling by the Use of Adaptive Grid Techniques", journal = "Environmental Monitoring and Assessment", volume = "52", pages = "225--228", year = "1998", url = "https://publications.utah.edu/publications/Har1998a/HartTomlinBerzins.pdf", } @Article{SCI:Joh98a, author = "C.R. Johnson and R.S. MacLeod", title = "Adaptive local regularization methods for the inverse {ECG} problem", journal = "Progress in Biophysics and Biochemistry", volume = "69", number = "2/3", pages = "405", year = "1998", month = "Dec", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scirun, inverse ecg, ncrr", url = "https://publications.utah.edu/publications/crj98/biophys97.pdf", } @Article{SCI:Joh98b, author = "C.R. Johnson", title = "Computer Visualization in Medicine", journal = "National Forum", volume = "Fall", pages = "17--21", year = "1998", keywords = ", scientific computing, scientific visualization, pse, problem solving environments, haptics", url = "https://publications.utah.edu/publications/crj98/icfd98.ps.Z", url = "https://publications.utah.edu/publications/crj98/icfd98.ps", } @InProceedings{SCI:Joh98c, author = "C.R. Johnson and M. Berzins and L. Zhukov and R. Coffey", title = "{SCIR}un: Applications to Atmospheric Diffusion Using Unstructured Meshes", booktitle = "Numerical Methods for Fluid Dynamics {VI}", pages = "111--122", year = "1998", editor = "M.J. Baines", publisher = "Oxford University Press", keywords = "scirun, computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, evaporation, scientific computing", url = "https://publications.utah.edu/publications/crj98/icfd98.ps.Z", url = "https://publications.utah.edu/publications/crj98/icfd98.ps", url = "https://publications.utah.edu/publications/crj98/icfd98.pdf", } @InProceedings{SCI:Kin98a, author = "G. Kindlmann and J. Durkin", title = "Semi-Automatic Generation of Transfer Functions for Direct Volume Rendering", booktitle = "{IEEE} Symposium on Volume Visualization", pages = "79--86", year = "1998", publisher = "{IEEE} Press", month = "Oct", keywords = "scalar field methods, volume rendering, transfer functions, scientific visualization", url = "https://publications.utah.edu/publications/gk98/vv98glk-paper.ps.gz", url = "https://publications.utah.edu/publications/gk98/vv98glk-paper.ps", url = "https://publications.utah.edu/publications/gk98/vv98glk-paper.pdf", url = "https://publications.utah.edu/publications/gk98/vv98glk-plate.ps.gz", url = "https://publications.utah.edu/publications/gk98/vv98glk-plate.ps", url = "https://publications.utah.edu/publications/gk98/vv98glk-plate.pdf", } @InProceedings{SCI:Liv98, author = "Y. Livnat and C.D. Hansen", title = "View Dependent Isosurface Extraction", booktitle = "{IEEE} Visualization '98", pages = "175--180", year = "1998", month = "Oct", keywords = "scalar field methods, isosurface extraction, remote isosurface visualization", url = "https://publications.utah.edu/publications/yarden98/wise.pdf", } @InCollection{SCI:Mil98a, author = "M. Miller and C.D. Hansen and C.R. Johnson", title = "Simulation Steering with {SCIRun} in a Distributed Memory Environment", booktitle = "Applied Parallel Computing, 4th International Workshop, {PARA'98}", journal = "Lecture Notes in Computer Science, Springer-Verlag", volume = "1541", pages = "366--376", year = "1998", editor = "B. Kagstrom and J. Dongarra and E. Elmroth and J. Wasniewski", series = "Lecture Notes in Computer Science", publisher = "Springer-Verlag", address = "Berlin", keywords = "scirun", url = "https://publications.utah.edu/publications/miller98/para98.ps.gz", url = "https://publications.utah.edu/publications/miller98/para98.ps", url = "https://publications.utah.edu/publications/miller98/hpdc98_abs.pdf", } @InProceedings{SCI:Mil98b, author = "M. Miller and C.D. Hansen and S.G. Parker and C.R. Johnson", title = "Simulation Steering with {SCIR}un in a Distributed Memory Environment", booktitle = "Seventh {IEEE} International Symposium on High Performance Distributed Computing (HPDC-7)", year = "1998", month = "Jul", url = "https://publications.utah.edu/publications/miller98/hpdc98_abs.ps.Z", url = "https://publications.utah.edu/publications/miller98/hpdc98_abs.ps", url = "https://publications.utah.edu/publications/miller98/hpdc98_abs.pdf", } @TechReport{SCI:Pan98a, author = "J. Pan and C.G.W. Sheppard and A. Tindall and M. Berzins and S.V. Pennington and J.M. Ware", title = "End Gas Inhomogeneity, Autoignition and Knock", number = "982616", year = "1998", institution = "SAE", type = "SAE meeting technical report", location = "San Fransisco, CA", url = "https://publications.utah.edu/publications/pan98/SAE982616.pdf", } @InProceedings{SCI:Par98a, author = "S.G. Parker and P. Shirley and Y. Livnat and C.D. Hansen and P.-P. Sloan", title = "Interactive Ray Tracing for Isosurface Extraction", booktitle = "{IEEE} Visualization '98", pages = "233--238", year = "1998", month = "October", keywords = "scalar field methods, isosurface extraction, parallel visualization, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/viz98/iso.pdf", } @TechReport{SCI:Par98b, author = "S.G. Parker and P. Shirley and B. Smits", title = "Single Sample Soft Shadows", number = "UUCS-98-019", year = "1998", institution = "University of Utah", type = "School of Computing Technical Report", month = "October", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt, scientific visualization, rtrt", } @InProceedings{SCI:Par98c, author = "S.G. Parker and M. Miller and C.D. Hansen and C.R. Johnson and P.-P. Sloan", title = "An Integrated Problem Solving Environment: The {SCIR}un Computational Steering System", booktitle = "31st Hawaii International Conference on System Sciences ({HICSS}-31)", volume = "VII", pages = "147--156", year = "1998", editor = "H. El-Rewini", publisher = pub-IEEE, month = "January", keywords = "scirun", url = "https://publications.utah.edu/publications/hicss98/hicss98_color.ps.gz", url = "https://publications.utah.edu/publications/hicss98/hicss98_color.ps.gz", url = "https://publications.utah.edu/publications/hicss98/hicss98_color.ps.gz", } @InProceedings{SCI:Pot98, author = "G.F. Potts and D.M. Weinstein and B.F. O'Donnell M.E. and C.R. Johnson and R.W. McCarley", title = "Bioelectric Modeling of the P300 in Schizophrenia", booktitle = "Biological Psychiatry (suppl.)", pages = "396", year = "1998", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements", } @InProceedings{SCI:Pot98a, author = "G.F. Potts and C.G. Wible and M.E. Shenton and D.M. Weinstein and I.A. Fisher and M.E. Levention and L.D. Gugino and R.W. McCarley", title = "Localization of Visual Cortex with Coregistered Functional Magnetic Resonance Imaging, Bioelectrically Modeled Cortical Visual Evoked Potential, and Transcranial Magnetic Stimulation Induced Visual Suppression", booktitle = "Journal of Cognitive Neuroscience (suppl.)", pages = "42", year = "1998", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements", } @Article{SCI:Pus1998a, author = "M.A. Puso and J.A. Weiss", title = "Finite Element Implementation of Anisotropic Quasilinear Viscoelasticity Using a Discrete Spectrum Approximation", journal = "Journal of Biomechanical Engineering", volume = "120", pages = "62--70", year = "1998", url = "https://publications.utah.edu/publications/puso98/visco.pdf", } @Article{SCI:Qua1998a, author = "K.M. Quapp and J.A. Weiss", title = "Material Characterization of Human Medial Collateral Ligament", journal = "Journal of Biomechanical Engineering", volume = "120", pages = "757--763", year = "1998", url = "https://publications.utah.edu/publications/quapp98/mcl.pdf", } @Article{SCI:Ric1998a, author = "M. Richards and J.A. Goulet and J.A. Weiss and N.A. Waanders and M.B. Schaffler and S.A. Goldstein", title = "Bone Regeneration and Fracture Healing: Experience with Distraction Osteogenesis Model", journal = "Clinical Orthopaedics and Related Research", volume = "355S", pages = "191--204", year = "1998", } @InProceedings{SCI:Sel1998a, author = "P.Selwood and M.Berzins and J. Nash and P.M. Dew", title = "Portable Parallel Adaptation of Unstructured Tetrahedral Meshes", booktitle = "Proceedings of Irregular 98 Conference", volume = "1457", pages = "56--67", year = "1998", editor = "A. Ferreira et al.", series = "Lecture Notes in Computer Science (LNCS)", publisher = "Springer", url = "https://publications.utah.edu/publications/selwood98/Selwood_Irregular98.pdf", } @Article{SCI:Sle98a, author = "P.A. Sleigh and M. Berzins and P.H. Gaskell and N.G. Wright", title = "An Unstructured Finite Volume Algorithm for Predicting Flow in Rivers and Estuaries", journal = "Computers and Fluids", volume = "27", number = "4", pages = "479--508", year = "1998", url = "https://publications.utah.edu/publications/sleigh98/CompFluids27.pdf", } @InProceedings{SCI:Slo98, author = "P.P.J. Sloan and D.M. Weinstein and J.D. Brederson", title = "Importance Driven Texture Coordinate Optimization", booktitle = "Eurographics 98", year = "1998", month = "Sep", keywords = ", scientific visualization", url = "https://publications.utah.edu/publications/sloan98/eg98.pdf", url = "https://publications.utah.edu/publications/sloan98/eg98CP.pdf", } @Unpublished{SCI:Ste1998a, author = "R. Stevens and H. Fuchs and A. van Dam and P. Hanrahan and C.R. Johnson and C. McMillan and P. Heermann and S. Louis and T. Defanti and D. Reed and E. Cohen", title = "Data and Visualization Corridors: Report on the 1998 DVC Workshop Series", year = "1998", month = "September", note = "DOE Report", } @Article{SCI:Tas1998a, author = "T. Tasdizen and L. Akarun and C. Ersoy", title = "Color Quantization with Genetic Algorithms", journal = "Signal Processing: Image Communication", volume = "12", pages = "49--57", year = "1998", } @Article{SCI:Tou98a, author = "N. Touheed and P. Selwood and P.K. Jimack and M. Berzins", title = "Parallel Dynamic Load-Balancing for the Solution of Transient {CFD} Problems Using Adaptive Tetrahedral Meshes", journal = "Parallel Computational Fluid Dynamics - Recent Developments and Advances Using Parallel Computers", pages = "81--88", year = "1998", editor = "D.R. Emerson and A. Ecer and J. Periaux and N. Satufoka and P. Fox", publisher = "Elsevier Science", url = "https://publications.utah.edu/publications/touheed98/Touheed_PDFD1998.pdf", } @Article{SCI:Van1998a, author = "D.C. Van Essen and H.A. Drury and S. Joshi and M. Miller", title = "Functional and Structural Mapping of Human Cerebral Cortex: Solutions are in the Surfaces", journal = "Proceedings of the National Academy of Sciences", volume = "95", number = "3", pages = "788--795", year = "1998", publisher = "Proceedings of the National Academy of Sciences", month = "February", } @InProceedings{SCI:Wei1998a, author = "J.A. Weiss and R.D. Rabbitt and A.E. Bowden", title = "Incorporation of Medical Image Data in Finite Element Models to Track Strain in Soft Tissues", booktitle = "Proc {SPIE} (Laser-Tissue Interaction IX)", volume = "3254", pages = "477--484", year = "1998", url = "https://publications.utah.edu/publications/weiss98/spie98.pdf", } @TechReport{SCI:Wei98a, author = "D.M. Weinstein", title = "The Analytic 3-D Transform for the Least-Squared Fit of Three Pairs of Corresponding Points", number = "UUCS-98-005", year = "1998", institution = "University of Utah", type = "School of Computing Technical Report", address = "Salt Lake City, UT", url = "https://publications.utah.edu/publications/dmw98/UUCS-98-005.ps", url = "https://publications.utah.edu/publications/dmw98/UUCS-98-005.ps.gz", url = "https://publications.utah.edu/publications/dmw98/UUCS-98-005.pdf", } @Article{SCI:Whi98a, author = "R.T. Whitaker", title = "A Level-Set Approach to 3D Reconstruction From Range Data", journal = "International Journal of Computer Vision", volume = "29", number = "3", pages = "203--231", year = "1998", keywords = "level-set methods, level sets,, ip image processing signal processing, level sets", url = "https://publications.utah.edu/publications/whitaker98/whitaker_1998.pdf", } @Article{SCI:Ahm97a, author = "I. Ahmad and M. Berzins", title = "An Algorithm for {ODE}s from Atmospheric Dispersion Problems", journal = "Applied Numerical Mathematics", volume = "25", pages = "137--149", year = "1997", url = "https://publications.utah.edu/publications/ahmad97/amsterp.pdf", } @Article{SCI:Alt1997a, author = "O. Alter and Y. Yamamoto", title = "Reply to the Comment on 'Protective Measurement of the Wave Function of a Single Squeezed Harmonic Oscillator State'", journal = "Physical Review A", volume = "56", number = "1", pages = "1057--1059", year = "1997", month = "July", url = "https://publications.utah.edu/publications/Alt1997a/Alter_PhysRevA.56.1057.pdf", } @Article{SCI:Alt1997b, author = "O. Alter and Y. Yamamoto", title = "Quantum Zeno Effect and the Impossibility of Determining the Quantum State of a Single System", journal = "Physical Review A", volume = "55", number = "4", pages = "R2499--R2502", year = "1997", month = "April", url = "https://publications.utah.edu/publications/Alt1997b/Alter_PhysRevA.55.R2499.pdf", } @InProceedings{SCI:Baj1997a, author = "C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "The Contour Spectrum", booktitle = "Proceedings of the 8th Annual {IEEE} Conference on Visualization ({VIS}-97)", pages = "167--175", year = "1997", editor = "Roni Yagel and Hans Hagen", organization = "IEEE Computer Society", month = "November", } @InProceedings{SCI:Baj1997b, author = "C. Bajaj and H.Y. Lee and R. Merkert and V. Pascucci", title = "{NURBS} based {B}-rep Models for Macromolecules and their Properties", booktitle = "Proceedings of the 4th Symposium on Solid Modeling and Applications", pages = "217--228", year = "1997", editor = "Christoph Hoffmann and Wim Bronsvort", publisher = "ACM Press", address = "New York", month = "May", isbn = "0-89791-946-7", } @InProceedings{SCI:Baj1997d, author = "C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "Fast Isocontouring for Structured and Unstructured Meshes in Any Dimension", booktitle = "Late Breaking Hot Topics Proceedings of the 8th Annual {IEEE} Conference on Visualization ({VIS}-97)", pages = "25--28", year = "1997", editor = "Amitabj Varshney and David S. Ebert", organization = "IEEE Computer Society", month = "November", } @Article{SCI:Bea97, author = "D.M. Beazley", title = "Using SWIG to control, prototype, and debug C program with Python", journal = "4th International Python Conference", year = "1997", keywords = ", swig. python", } @Article{SCI:Ber1997b, author = "M. Berzins and S.V. Pennington and P.R. Pratt and J.M. Ware", title = "{SPRINT2D} Software for Convection Dominated {PDE}s", journal = "Modern Software Tools in Scientific Computing", year = "1997", editor = "E. Arge and A.M. Bruaset and H.P. Langtangen", publisher = "Birkhauser Press", url = "https://publications.utah.edu/publications/Ber1997b/Berzins_SPRINT2D.pdf", } @Article{SCI:Ber1997c, author = "M. Berzins and P.J. Capon and P.K. Jimack", title = "On Spatial Adaptivity and Interpolation when Using the Method of Lines", journal = "Applied Numerical Mathematics: Transactions of IMACS", volume = "26", number = "1--2", pages = "117--133", year = "1997", url = "https://publications.utah.edu/publications/berzins97/berzins91spatial.pdf", } @Article{SCI:Chr1997a, author = "G.E. Christensen and S.C. Joshi and M. Miller", title = "Volumetric Transformation of Brain Anatomy", journal = "IEEE Trans Med Imaging", volume = "16", number = "6", pages = "864--877", year = "1997", month = "December", } @Article{SCI:Chr1997b, author = "G.E. Christensen and S.C. Joshi and M.I. Miller", title = "Volumetric Transformation of Brain Anatomy", journal = "IEEE Transactions on Medical Imaging", volume = "16", number = "6", pages = "864--877", year = "1997", month = "December", } @Article{SCI:Cre1997a, author = "D.J. Creasey and D.E. Heard and M. Pilling and B.J. Whitaker and M. Berzins and R. Fairlie", title = "Visualisation of a Supersonic Free-Jet Expansion Using Laser-Induced Fluorescence Spectroscopy: Application to the Measurement of Rate Constants at Ultralow Temperatures", journal = "Applied Physics B: Lasers and Optics", volume = "65", pages = "375--391", year = "1997", url = "https://publications.utah.edu/publications/Cre1997a/Creasey_AppPhysB-LasersOptics1997.pdf", } @Article{SCI:Hal1997a, author = "J.W. Haller and A. Banerjee and G.E. Christensen and M. Gado and S. Joshi and M.I. Miller and Y. Sheline and M.W. Vannier and J. Csernansky", title = "Three-Dimensional Hippocampal {MR} Morphometry with High-Dimensional Transformation of a Neuroanatomic Atlas", journal = "Radiology", volume = "202", number = "2", pages = "504--510", year = "1997", month = "February", } @InProceedings{SCI:Han97a, author = "C.D. Hansen and M. Krogh and J. Painter", title = "Parallel Rendering Techniques for Massively Parallel Visualization", booktitle = "International Symposium on Parallel Algorithms/Architecture Synthesis", pages = "276--281", year = "1997", month = "March", location = "Aizu-Wakamatsu, Japan", } @TechReport{SCI:Joh97a, author = "C.R. Johnson and D.M. Beazley and Y. Livnat and S.G. Parker and J.A. Schmidt and H.W. Shen and D.M. Weinstein", title = "Applications of Large-Scale Computing and Scientific Visualization in Medicine", number = "UUSCI-1997-001", year = "1997", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "scirun, scientific visualization, scientific computing, pse, imaging", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-1997-001.pdf", } @Article{SCI:Joh97d, author = "C.R. Johnson", title = "Computational and Numerical Methods for Bioelectric Field Problems", journal = "Critical Reviews in BioMedical Engineering", volume = "25", number = "1", pages = "1--81", year = "1997", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, vector field methods, tensor field methods", url = "https://publications.utah.edu/publications/crj97/Crit-Rev-BE-Johnson97.pdf", } @Article{SCI:Jos1997a, author = "S.C. Joshi and M.I. Miller and U. Grenander", title = "On the Geometry and Shape of Brain Sub-Manifolds", journal = "International Journal of Pattern Recognition and Artificial Intelligence, special issue on Magnetic Resonance Imaging", volume = "11", number = "8", pages = "1317--1343", year = "1997", } @InProceedings{SCI:Jos1997b, author = "S. Joshi and A. Banerjee and G.E. Christensan and J.G. Csernansky and J.W. Haller and M.I. Miller and L. Wang", title = "Gaussian Random Fields on Sub-Manifolds for Characterizing Brain Surfaces", booktitle = "Proceedings of the International Conference on Image Processing in Medical Imaging (IPMI)", year = "1997", } @Article{SCI:Kle97a, author = "R.N. Klepfer and C.R. Johnson and R.S. MacLeod", title = "The Effects of Inhomogeneities and Anisotropies on Electrocardiographic Fields: A Three-Dimensional Finite Element Study", journal = "{IEEE} Transactions on Biomedical Engineering", volume = "44", number = "8", pages = "706--719", year = "1997", month = "August", url = "https://publications.utah.edu/publications/ieee_trans_8-97/FEStudy.ps.gz", url = "https://publications.utah.edu/publications/ieee_trans_8-97/ieee_trans_8-97.html", } @InProceedings{SCI:Kre1997a, author = "M. van Kreveld and R. van Oostrum and C. Bajaj and V. Pascucci and D.R. Schikore", title = "Contour Trees and Small Seed Sets for Isosurface Traversal", booktitle = "Proceedings of the 13th International Annual Symposium on Computational Geometry ({SCG}-97)", pages = "212--220", year = "1997", publisher = "ACM Press", address = "New York", month = "June", isbn = "0-89791-878-9", } @Article{SCI:Kro97a, author = "M. Krogh and J. Painter and C.D. Hansen", title = "Parallel Sphere Rendering", journal = "Parallel Computing", volume = "23", number = "7", pages = "961--974", year = "1997", } @InProceedings{SCI:Lei1997a, author = "Z. Lei and T. Tasdizen and D.B. Cooper", title = "PIMS and Invariant Parts for Shape Recognition", booktitle = "Sixth International Conference on Computer Vision", year = "1997", publisher = "Narosa Publishing House", url = "https://publications.utah.edu/publications/Lei1997a/Lei_ICCV97.pdf", } @Article{SCI:Lev1997a, author = "A.L. Levy and T.J. Schaewe and M.I. Miller and K.R. Smith and A.M. Hammoud and J.M. Henderson and S. Joshi and K.E. Mark and C.D. Sturm and L.L. McDurmont Jr and R. Bucholz", title = "An Internet-Connected, Patient-Specific, Deformable Brain Atlas Integrated into a Surgical Navigation System", journal = "J Digit Imaging", volume = "10", number = "3 (Suppl. 1)", pages = "231--237", year = "1997", month = "August", } @Article{SCI:Mil1997a, author = "M. Miller and A. Banerjee and G. Christensen and S. Joshi and N. Khaneja and U. Grenander and L. Matejic", title = "Statistical Methods in Computational Anatomy", journal = "Stat Methods Med Res", volume = "6", number = "3", pages = "267--299", year = "1997", month = "September", } @InProceedings{SCI:Mil1997b, author = "M.I. Miller and S. Joshi", title = "Discussion of Mathematics for Object Recognition Shape, Invariance and Deformations", booktitle = "Proceedings of the Workshop on Mathematics for Object Recognition Shape, Invariance and Deformations", year = "1997", editor = "L. Younes", month = "November", } @InCollection{SCI:Par1997a, author = "S.G. Parker and D.M. Weinstein and C.R. Johnson", title = "The {SCIR}un Computational Steering Software System", booktitle = "Modern Software Tools in Scientific Computing", pages = "1--40", year = "1997", editor = "E. Arge and A.M. Bruaset and H.P. Langtangen", publisher = "Birkhauser Press", address = "Boston", keywords = "scirun, problem solving environments, ncrr, scientific visualization, pse pses problem solving envoronment, bioelectric fields", url = "https://publications.utah.edu/publications/Par1997a/Parker_SCIRun1997.pdf", } @Article{SCI:Par97b, author = "S.G. Parker and D.M. Beazley and C.R. Johnson", title = "Computational Steering Software Systems and Strategies", journal = "{IEEE} Computational Science and Engineering", volume = "4", number = "4", pages = "50--59", year = "1997", keywords = "scirun, pse, problem solving environments", url = "https://publications.utah.edu/publications/sparker97/ieee_cse96.ps.Z", } @InProceedings{SCI:Sel96a, author = "P. Selwood and N.A. Verhoeven and J.M. Nash and M. Berzins and N.P. Weatherill and P.M. Dew and K. Morgan", title = "Parallel Mesh Generation and Adaptivity : Partitioning and Analysis", booktitle = "Parallel {C.F.D.}- Proc. of Parallel {CFD} 96 Conference", year = "1997", editor = "A.Ecer and J.Periaux and N.Satufoka and P.Schiano", publisher = "Elesvier Science {BV}", month = "May", location = "Capri, Italy", isbn = "0-444 823271", } @Article{SCI:Sel97a, author = "P. Selwood and M. Berzins and P.M. Dew", title = "3D Parallel Mesh Adaptivity: Data Structures and Algorithms", journal = "Proc. of {SIAM} Conf. on Parallel Processing for Scientific Computing", pages = "(CD-Rom)", year = "1997", month = "March", location = "Minneapolis, MN, USA", isbn = "0-89871-395-1", url = "https://publications.utah.edu/publications/selwood97/d-parallel-mesh-adaptivity.pdf", } @InProceedings{SCI:Slo97, author = "P.P.J. Sloan and M.F. Cohen and S.J. Gortler", title = "Time Critical Lumigraph Rendering", booktitle = "1997 Symposium on Interactive 3D Graphics", year = "1997", month = "Apr", keywords = "parallel visualization, interactive rt distributed interactive ray tracing dirt", url = "https://publications.utah.edu/publications/sloan97/si3d.ps.gz", } @Article{SCI:Spe97a, author = "W. Speares and M. Berzins", title = "A 3D Unstructured Mesh Adaptation Algorithm for Time Dependent Shock Dominated Problems", journal = "Int. Jour Numerical Methods in Fluids", volume = "25", pages = "81--104", year = "1997", url = "https://publications.utah.edu/publications/speares97/IJNMF25.pdf", } @Article{SCI:Tom97a, author = "A. Tomlin and M. Berzins and J.M. Ware and J. Smith and M. Pilling", title = "On the use of adaptive gridding methods for modelling chemical transport from multi-scale sources", journal = "Atmospheric Env.", volume = "31", number = "18", pages = "2945--2959", year = "1997", url = "https://publications.utah.edu/publications/tomlin97/pfinal.pdf", } @InCollection{SCI:Wei97a, author = "D.M. Weinstein and C.R. Johnson", title = "Effects of Geometric Uncertainty on the Inverse {EEG} Problem", booktitle = "Computational, Experimental, and Numerical Methods for Solving Ill-Posed Inverse Imaging Problems:Medical and Nonmedical Applications", volume = "3171", pages = "138--145", year = "1997", editor = "R.L. Barbour and M.J. Carvlin and M.A. Fiddy", series = "{SPIE} '97", publisher = "{SPIE}", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, scientific computing", url = "https://publications.utah.edu/publications/spie97/spie97.ps.gz", url = "https://publications.utah.edu/publications/spie97/spie97.ps", } @TechReport{SCI:Wei97b, author = "D.M. Weinstein and C.R. Johnson", title = "Cache-rings for Memory Efficient Isosurface Construction", number = "UUCS-97-016", year = "1997", institution = "University of Utah", type = "School of Computing Technical Report", address = "Salt Lake City, UT", keywords = "scalar field methods, isosurface extraction", url = "https://publications.utah.edu/publications/cache-rings/cache-rings.ps.gz", url = "https://publications.utah.edu/publications/cache-rings/cache-rings.ps", url = "https://publications.utah.edu/publications/cache-rings/cache-rings.html", } @Article{SCI:Yu97a, author = "F. Yu and Y. Livnat and C.R. Johnson", title = "An Automatic Adaptive Refinement and Derefinement Method for 3D Elliptic Problems", journal = "Applied Numerical Mathematics", year = "1997", url = "https://publications.utah.edu/publications/yu97/adaptive_paper.pdf", } @Article{SCI:Alt1996a, author = "O. Alter and Y. Yamamoto", title = "Protective Measurement of the Wave Function of a Single Squeezed Harmonic Oscillator State", journal = "Physical Review A", volume = "53", number = "5", pages = "R2911--R2914", year = "1996", month = "May", url = "https://publications.utah.edu/publications/Alt1996a/Alter_PhysRevA.53.R2911.pdf", } @InCollection{SCI:Alt1996b, author = "O. Alter and Y. Yamamoto", title = "Inhibition of the Measurement of the Wavefunction of a Single Quantum System and the Projection Postulate", booktitle = "Quantum Physics, Chaos Theory and Cosmology", pages = "151--172", year = "1996", editor = "M. Namiki and I. Ohba and K. Maeda and Y. Aizawa", publisher = "American Institute of Physics", url = "https://publications.utah.edu/publications/Alt1996b/Alter_QPCTC1996.pdf", } @InCollection{SCI:Alt1996c, author = "O. Alter and Y. Yamamoto", title = "The Quantum Zeno Effect of a Single System is Equivalent to the Indetermination of the Quantum State of a Single System", booktitle = "Quantum Interferometry", pages = "539--544", year = "1996", editor = "F. De Martini and G. Denardo and Y. Shih", publisher = "VCH", url = "https://publications.utah.edu/publications/Alt1996c/Alter_QuantumZeno1996.pdf", } @InCollection{SCI:Alt1996d, author = "O. Alter and Y. Yamamoto", title = "The Unknown Wavefunction of a Single System Cannot Be Inferred Using Repeated Quantum Measurements", booktitle = "Quantum Coherence and Decoherence", pages = "31--34", year = "1996", editor = "K. Fujikawa and Y. A. Ono", publisher = "Elsevier Science, Amsterdam, Netherlands", url = "https://publications.utah.edu/publications/alter96/Alter_QuantumCohere1996.pdf", } @InProceedings{SCI:Baj1996a, author = "C.L. Bajaj and V. Pascucci and D.R. Schikore", title = "Fast Isocontouring for Improved Interactivity", booktitle = "1996 Volume Visualization Symposium", pages = "39--46", year = "1996", organization = "IEEE Computer Society", month = "October", isbn = "0-89791-741-3", } @InProceedings{SCI:Baj1996b, author = "C.L. Bajaj and V. Pascucci", title = "Splitting a Complex of Convex Polytopes in any Dimension", booktitle = "Proceedings of the Twelfth Annual Symposium On Computational Geometry ({ISG} '96)", pages = "88--97", year = "1996", publisher = "ACM Press", address = "New York", month = "May", isbn = "0-89791-832-0", } @InProceedings{SCI:Baj1996c, author = "C.L. Bajaj and F. Bernardini and V. Pascucci and D.R. Schikore", title = "Interrogative Visualization of the Visible Human Datasets", booktitle = "Proceedings of the The Visible Human Project Conference", year = "1996", } @InProceedings{SCI:Bea96a, author = "D.M. Beazley", title = "Using SWIG to control, prototype, and debug C programs with Python", booktitle = "4th International Python Conference", year = "1996", } @Article{SCI:Ber1996c, author = "M. Berzins and T.H.C. Childs and G.R. Ryder", title = "The Selective Laser Sintering of Polycarbonate", journal = "CIRP Annals", volume = "45", number = "1", pages = "187--190", year = "1996", issn = "0007-8506", url = "https://publications.utah.edu/publications/berzins96/MBTHCGRR96.pdf", } @Article{SCI:Ber96a, author = "M. Berzins and J.M. Ware", title = "Solving Convection and Convection Reaction Problems Using the M.O.L.", journal = "Applied Numerical Mathematics", volume = "20", pages = "83--99", year = "1996", url = "https://publications.utah.edu/publications/berzins96/molpap.pdf", } @InProceedings{SCI:Coo1996a, author = "M.L. Cooper and A.D. Lanterman and S.C. Joshi and M.I. Miller", title = "Representing The Variation of Thermodynamic State Via Principal Components Analysis", booktitle = "Proceedings of the Third Workshop On Conventional Weapon ATR", pages = "481--490", year = "1996", month = "November", } @InProceedings{SCI:Git96, author = "C.S. Gitlin and C.R. Johnson", title = "MeshView: A tool for exploring 3D unstructured tetrahedral meshes", booktitle = "5th International Meshing Roundtable", pages = "333--345", year = "1996", keywords = "computational pde pdes computational partial differential equations evaporation, scientific computing", url = "https://publications.utah.edu/publications/gitlin96/mesh96.ps.Z", } @Article{SCI:Hal1996a, author = "J.W. Haller and G.E. Christensen and S.C. Joshi and J.W. Newcomer and M.I. Miller and J.G. Csernansky and M. Vannier", title = "Hippocampal MR Imaging Morphometry by Means of General Pattern Matching", journal = "Radiology", volume = "199", number = "3", pages = "787--791", year = "1996", month = "June", } @Article{SCI:Joh96b, author = "C.R. Johnson and D.M. Beazley and Y. Livnat and S.G. Parker and J.A. Schmidt and H.W. Shen and D.M. Weinstein", title = "Applications of Large-Scale Computing and Scientific Visualization in Medicine", journal = "International Journal on Supercomputer Applications and High Performance Computing", year = "1996", keywords = "scientific computing, scientific visualization", url = "https://publications.utah.edu/publications/crj96/ijsa.ps", } @InCollection{SCI:Joh96e, author = "C.R. Johnson and R.S. MacLeod", title = "Local regularization and adaptive methods for the inverse Laplace problem", booktitle = "Biomedical and Life Physics", pages = "224--234", year = "1996", editor = "D.N. Ghista", publisher = "Vieweg-Verlag", address = "Braunschweig", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, ncrr, scientific computing", url = "https://publications.utah.edu/publications/crj96/gauss94_2.ps", url = "https://publications.utah.edu/publications/crj96/gauss94_2.ps.Z", } @Article{SCI:Kle96, author = "R.N. Klepfer and C.R. Johnson and R.S. MacLeod", title = "The effects of inhomogeneities and anisotropies on electrocardiographic fields: A three-dimensional finite element study", journal = "{IEEE} Trans. on Biomedical Engineering", year = "1996", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, ncrr, scientific computing", url = "https://publications.utah.edu/publications/klepfer96/ieee_bme96.ps", url = "https://publications.utah.edu/publications/klepfer96/ieee_bme96.ps.Z", } @Article{SCI:Liv96, author = "Y. Livnat and H.W. Shen and C.R. Johnson", title = "A Near Optimal Isosurface Extraction Algorithm Using the Span Space", journal = "{IEEE} Transactions on Visual Computer Graphics", volume = "2", number = "1", pages = "73--84", year = "1996", keywords = "scalar field methods, isosurface extraction, scientific visualization", url = "https://publications.utah.edu/publications/yarden96/tvcg96.pdf", } @InProceedings{SCI:Nur1996a, author = "E. Nurgat and M. Berzins", title = "A new relaxation scheme for solving EHL Problems", booktitle = "23rd Leeds-Lyon Symposium on Tribology, Tribology Series", volume = "32", pages = "125a-134", year = "1996", editor = "D.Dowson et al.", publisher = "Elsevier", isbn = "0444828095", url = "https://publications.utah.edu/publications/Nur1996a/LLCPaper.pdf", } @InProceedings{SCI:Nur96a, author = "E. Nurgat and M. Berzins", title = "A new relaxation scheme for solving {EHL} Problems", booktitle = "Proceedings of 23rd Leeds-Lyon Symposium on Tribology", volume = "32", pages = "125A--134", year = "1996", editor = "D.Dowson et al.", series = "Tribology Series", publisher = "Elsevier", isbn = "0444828095", } @InProceedings{SCI:Pai96a, author = "J. Painter and H.P. Bunge and Y. Livnat", title = "Case Study: Mantle Convection Visualization on the Cray T3D", booktitle = "{IEEE} Visualization `96", pages = "409--412", year = "1996", keywords = "scalar field methods, isosurface extraction, geophysics geology, scientific visualization", } @InProceedings{SCI:Pai96b, author = "J. Painter and M. Krogh and C.D. Hansen", title = "Parallel Sphere Rendering", booktitle = "{EUROGRAPHICS} Workshop on Parallel Graphics and Visualization", year = "1996", month = "September", location = "Bristol, England", keywords = "parallel visualization", } @Article{SCI:Par96a, author = "S.G. Parker and C.R. Johnson", title = "{SCIR}un: Applying Interactive Computer Graphics to Scientific Problems", journal = "{SIGGRAPH} (applications/demo)", year = "1996", keywords = "scirun, scientific computing, scientific visualization", url = "https://publications.utah.edu/publications/sparker96/siggraph96.ps", } @Article{SCI:Pas1996a, author = "V. Pascucci and V. Ferrucci and A. Paoluzzi", title = "Dimension-Independent Convex-Cell Based HPC: Skeletons and Product", journal = "International Journal of Shape Modeling", volume = "2", pages = "37--67", year = "1996", } @Article{SCI:Pra1996a, author = "P. Pratt and M. Berzins", title = "Shock preserving quadratic interpolation for visualization on triangular meshes", journal = "Computers & Graphics", volume = "20", number = "5", pages = "723--730", year = "1996", url = "https://publications.utah.edu/publications/Pra1996a/Pratt_CG1996.pdf", } @InProceedings{SCI:Ryd96a, author = "G.J. Ryder and M. Berzins and T.H.C. Childs", title = "Modelling Simple Feature Creation in Selective Laser Sintering", booktitle = "Proc 7th Symposium on Solid Free Form Fabrication", pages = "567--574", year = "1996", editor = "J.W. Barlow et al.", location = "University of Texas at Austin", url = "https://publications.utah.edu/publications/ryder96/1996-65-Ryder.pdf", } @InProceedings{SCI:She96a, author = "H.W. Shen and C.R. Johnson and K.L. Ma", title = "Global and Local Vector Field Visualization Using Enhanced Line Integral Convolution", booktitle = "Symposium on Volume Visualization", pages = "63--70", year = "1996", publisher = "{IEEE} Press", keywords = "vector field methods, scientific visualization", url = "https://publications.utah.edu/publications/shen96/lic.ps", } @InProceedings{SCI:She96b, author = "H.W. Shen and C.D. Hansen and Y. Livnat and C.R. Johnson", title = "Isosurfacing in Span Space with Utmost Efficiency", booktitle = "{IEEE} Visualization `96", pages = "287--294", year = "1996", publisher = "{IEEE} Press", keywords = "scalar field methods, isosurface extraction, scientific visualization", url = "https://publications.utah.edu/publications/shen96/issue.pdf", } @InProceedings{SCI:Sle1996a, author = "P.A. Sleigh and M. Berzins and P.H. Gaskell", title = "A Reliable and Accurate Technique for the Modelling of Complex Hydraulic Flows", booktitle = "Proceedings of the First International Symposium on Finite Volumes for Complex Applications", pages = "635--642", year = "1996", location = "Hermes, Paris", isbn = "2-86601-556-8", url = "https://publications.utah.edu/publications/Sle1996a/Sleigh_FVCA1996.pdf", } @InProceedings{SCI:Smi1996a, author = "J.D.B. Smith and A.S. Tomlin and M. Berzins and V. Pennington and M.J. Pilling", title = "Modelling the effects of Concentrated Emissions Sources on Tropospheric Ozone", booktitle = "Proceedings of the 3rd Workshop on Modelling of Chemical Reaction Systems", year = "1996", month = "July", location = "Heidelberg, Germany", howpublished = "Published on CD-ROM", isbn = "3-932217-00-4", url = "https://publications.utah.edu/publications/Smi1996a/Smith_p29sm1996.pdf", } @Article{SCI:Wei1996a, author = "J.A. Weiss and B.N. Maker and S. Govindjee", title = "Finite Element Implementation of Incompressible, Transversely Isotropic Hyperelasticity", journal = "Computer Methods in Applied Mechanics and Engineering", volume = "135", pages = "107--128", year = "1996", url = "https://publications.utah.edu/publications/weiss96/fe.pdf", } @InProceedings{SCI:Ahr95a, author = "J. Ahrens and C.D. Hansen", title = "Cost-Effective Data-Parallel Load Balancing", booktitle = "International Conference on Parallel Processing", pages = "14--18", year = "1995", month = "August", location = "Oconomowoc, Wi.", } @Article{SCI:Alt1995a, author = "O. Alter and Y. Yamamoto", title = "Inhibition of the Measurement of the Wave Function of a Single Quantum System in Repeated Weak Quantum Nondemolition Measurements", journal = "Physical Review Letters", volume = "74", number = "21", pages = "4106--4109", year = "1995", publisher = "American Physical Society", month = "May", url = "https://publications.utah.edu/publications/alter95/Alter_PhysRevLett.74.4106.pdf", } @InCollection{SCI:Alt1995b, author = "O. Alter and Y. Yamamoto", title = "Can We Measure the Wave Function of a Single Wave Packet of Light?: Brownian Motion and Continuous Wave Packet Collapse in Repeated Weak Quantum Non-Demolition Measurements", booktitle = "Fundamental Problems in Quantum Theory", volume = "755", pages = "103--109", year = "1995", editor = "D.M. Greenberger and A. Zeilinger", publisher = "New York Academy of Sciences, New York, NY", url = "https://publications.utah.edu/publications/Alt1995b/Alter_FPQT1995.pdf", } @InProceedings{SCI:Ban1995a, author = "A. Banerjee and G.E. Christensen and J. Haller and S. Joshi and M.E. Raichle and M.I. Miller", title = "Accommodating anatomical variability in functional imaging via deformable templates", booktitle = "Proc. 33rd Annual Allerton Conference on Communication, Control and Computing", pages = "275--284", year = "1995", } @Article{SCI:Ber1995a, author = "M. Berzins and J.M. Ware", title = "Positive Cell Centered Finite Volume Discretisation Methods for Hyperbolic Equations on Irregular Meshes", journal = "Applied Numerical Mathematics", volume = "16", pages = "417--438", year = "1995", url = "https://publications.utah.edu/publications/Ber1995a/Berzins_Apnumv16FVol.pdf", } @Article{SCI:Ber1995d, author = "M. Berzins and P. Gaskell and A. Sleigh and A.S. Tomlin and J. Ware", title = "An adaptive CFD solver for time-dependent environmental flow problems", journal = "Proceedings of the Institute of Computational Fluid Dynamics Conference", pages = "311-317", year = "1995", editor = "K.W. Morton, M.J. Baines", publisher = "Oxford University Press", url = "https://publications.utah.edu/publications/Ber1995d/2453_001.pdf", } @InProceedings{SCI:Ber95a, author = "M. Berzins and T.H.C. Childs and K.W. Dalgarno and G.R. Ryder and G. Stein", title = "Densification and Distortion in Selective Laser Sintering of Polycarbonate", booktitle = "Proc 6th Symposium on Solid Free Form Fabrication", pages = "196--203", year = "1995", editor = "J.W. Barlow et al.", location = "University of Texas at Austin", url = "https://publications.utah.edu/publications/berzins95/1995-24-Berzins.pdf", } @Article{SCI:Ber95c, author = "M. Berzins", title = "Temporal Error Control in the Method of Lines for Convection Dominated Equations", journal = "{SIAM} Journal on Scientific Computing", volume = "16", pages = "558--580", year = "1995", url = "https://publications.utah.edu/publications/berzins95/SIAMhypbal4.pdf", } @Article{SCI:Chr1995a, author = "G.E. Christensen and R.D. Rabbitt and M.I. Miller and S.C. Joshi and U. Grenander and T.A. Coogan", title = "Topological Properties of Smooth Anatomic Maps", journal = "Information Processing in Medical Imaging", pages = "101--112", year = "1995", } @TechReport{SCI:Gha95, author = "P. Gharpure and C.R. Johnson", title = "A Cellular Automaton Model of Electrical Activation in Canine Ventricles: A Validation Study", number = "UUSCI-1995-002", year = "1995", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-1995-002.pdf", } @InProceedings{SCI:Hal1995a, author = "J.W. Haller and M.I. Miller and G.E. Christensen and S. Joshi and M. Gado and J. Csernansky and M.W. Vannier", title = "A Comparison of Automated and Manual Segmentation of Hippocampus MR Images", booktitle = "Proceedings of SPIE Medical Imaging", pages = "206--215", year = "1995", month = "March", } @InProceedings{SCI:Hal1995b, author = "J.W. Haller and G.E. Christensen and S. Joshi and M.I. Miller and M.W. Vannier", title = "Digital Atlas-Based Segmentation of the Hippocampus", booktitle = "Computer Assisted Radiology: Proceedings of the International Symposium on Computer and Communications Systems for Image Guided Diagnosis and Therapy", pages = "152--157", year = "1995", editor = "C.C. Jaffe and H.U. Lemke and K. Inamura and M.W. Vannier", month = "June", } @InProceedings{SCI:Han95a, author = "C.D. Hansen and G.C. de Verdiere and M. Krogh and J. Painter and R. Troutman", title = "Binary-Swap Volumetric Rendering on the T3D", booktitle = "Cray Users Group Conference", pages = "61--69", year = "1995", month = "March", location = "Denver, Co.", keywords = "volume rendering", } @InProceedings{SCI:Han95b, author = "C.D. Hansen and M. Krogh and W. White", title = "Massively Parallel Visualization: Parallel Rendering", booktitle = "{SIAM} Parallel Computation Conference", pages = "790--795", year = "1995", month = "February", location = "San Francisco, Ca.", } @TechReport{SCI:Hen95a, author = "C.S. Henriquez and C.R. Johnson and K.A. Henneberg L.J. and A.E. Pollard", title = "Large Scale Biomedical Modeling and Simulation: From Concepts to Results", number = "UUSCI-1995-001", year = "1995", institution = "University of Utah", type = "{SCI} Institute Technical Report", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, computational pde pdes computational partial differential equations evaporation, cardiac heart, scientific computing, scientific visualization", url = "https://publications.utah.edu/publications/SCITechReports/UUSCI-1995-001.pdf", } @InProceedings{SCI:Hod1995a, author = "D.C. Hodgson and P.K. Jimack and P. Selwood and M. Berzins", title = "Scalable, Parallel Generation of Partitioned Unstructured Meshes", booktitle = "Parallel {C.F.D.} -- Implementations and Results using Parallel Computers", pages = "665-672", year = "1995", editor = "A. Ecer and J. Periaux and N. Satufoka and S. Taylor", month = "June", location = "Parallel {CFD} Conference 1995, pasadena, California", isbn = "0-444 823220", url = "https://publications.utah.edu/publications/hodgson95/scalable-parallel-generation.pdf", } @InProceedings{SCI:Joh95a, author = "C.R. Johnson and R.S. MacLeod and J.A. Schmidt", title = "Software Tools for Modeling, Computation, and Visualization in Medicine", booktitle = "CompMed 94 Proceedings", year = "1995", publisher = "World Scientific", keywords = "pse, problem solving environments", url = "https://publications.utah.edu/publications/crj95/compmed.ps", url = "https://publications.utah.edu/publications/crj95/compmed.ps.Z", } @InProceedings{SCI:Joh95b, author = "C.R. Johnson and S.G. Parker", title = "Applications in Computational Medicine using {SCIR}un: A Computational Steering Programming Environment", booktitle = "Supercomputer `95", pages = "2--19", year = "1995", editor = "H.W. Meuer", publisher = "Springer-Verlag", keywords = "scirun, forward problems inverse problems forward simulation inverse solutions finite elements, computational pde pdes computational partial differential equations evaporation, scientific computing, pse, problem solving environments", url = "https://publications.utah.edu/publications/super95/super95_6.ps", url = "https://publications.utah.edu/publications/super95/super95_6.ps.Z", } @InCollection{SCI:Joh95c, author = "C.R. Johnson", title = "Direct and Inverse Bioelectric Field Problems", booktitle = "Computational Science Education Project", year = "1995", editor = "E. Oliver and M. Strayer and V. Meiser and D. Zachmann and R. Giles", publisher = "DOE", address = "Washington, D.C.", keywords = "forward problems inverse problems forward simulation inverse solutions, finite elements, scientific visualization, bioelectric fields, scientific computing", } @InCollection{SCI:Joh95d, author = "C.R. Johnson", title = "Numerical Methods for Bioelectric Field Problems", booktitle = "The Biomedical Engineering Handbook", pages = "161--188", year = "1995", editor = "J.D. Bronzino", publisher = "CRC Press", address = "Boca Ratan", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, computational pde pdes computational partial differential equations evaporation, scientific computing", url = "https://publications.utah.edu/publications/crj95/bioeng_1.ps", url = "https://publications.utah.edu/publications/crj95/bioeng_1.ps.Z", } @InProceedings{SCI:Jos1995a, author = "S.C. Joshi and M.I. Miller and G.E. Christensen and A. Banerjee and T.A. Coogan and U. Grenander", title = "Hierarchical brain mapping via a generalized Dirichlet solution for mapping brain manifolds", booktitle = "Proc. of the SPIE International Symposium on Optical Science, Engineering, and Instrumentation", pages = "278--289", year = "1995", month = "August", } @InProceedings{SCI:Jos1995b, author = "S.C. Joshi and J. Wang and M.I. Miller and D.V. Essen and U. Grenander", title = "On the Differential Geometry of the Cortical Surface", booktitle = "Proceedings of SPIE 1995 International Symposium: Vision Geometry IV", pages = "304--311", year = "1995", month = "August", location = "San Diego, CA", } @InProceedings{SCI:Kle95a, author = "R.N. Klepfer and C.R. Johnson and R.S. MacLeod", title = "The Effects of Inhomogeneities and Anisotropies on Electrocardiographic Fields: A Three-Dimensional Finite Element Study", booktitle = "{IEEE} Engineering in Medicine and Biology Society 17th Annual International Conference", pages = "233--234", year = "1995", publisher = "{IEEE} Press", url = "https://publications.utah.edu/publications/klepfer95/embs95_rnk5.ps", url = "https://publications.utah.edu/publications/klepfer95/embs95_rnk5.ps.Z", } @InProceedings{SCI:Pai95a, author = "J. Painter and P. McCormick and M. Krogh and C.D. Hansen and G.C. de Verdiere", title = "{ACLMPL}: Portable and Efficient Message Passing for {MPP}s", booktitle = "First European T3D User's Group Workshop", pages = "4--10", year = "1995", month = "November", location = "Lausanne Switzerland", } @Article{SCI:Pao1995a, author = "A. Paoluzzi and V. Pascucci and M. Vicentino", title = "Geometric Programming: A Programming Approach to Geometric Design", journal = "ACM Transactions on Graphics", volume = "14", number = "3", pages = "266--306", year = "1995", month = "July", } @InProceedings{SCI:Pao1995b, author = "A. Paoluzzi and V. Pascucci", title = "Building Design Programming with a Functional Language", booktitle = "Proceedings of 6th Conference on Computing in Civil and Building Engineering", year = "1995", publisher = "AA Balkema, Rotterdam", month = "July", location = "Berlin, Germany", } @InProceedings{SCI:Pao1995c, author = "A. Paoluzzi and V. Pascucci and C. Sansoni", title = "Prototype Shape Modeling with a Design Language", booktitle = "Proceedings of the Sixth Int. Conf. on Computer-Aided Architectural Design Futures", pages = "59--78", year = "1995", editor = "Milton Tan and Robert Teh", series = "The Global Design Studio", address = "Centre for Advanced Studies in Architecture, National University of Singapore", } @InProceedings{SCI:Par1995a, author = "S.G. Parker and C.R. Johnson", title = "{SCIR}un: A Scientific Programming Environment for Computational Steering", booktitle = "Proceedings of the 1995 ACM/IEEE Conference on Supercomputing", booktitle_url = "http://doi.acm.org/10.1145/224170.224354", number = "52", year = "1995", series = "Supercomputing '95", publisher = "ACM", address = "New York, NY, USA", location = "San Diego, California, USA", isbn = "0-89791-816-9", keywords = "steering, interactive, dataflow, visual programming, scientific computing", url = "https://publications.utah.edu/publications/Par1995a/Parker_SCIRun_SC1995.pdf", } @InProceedings{SCI:Pas1995a, author = "V. Pascucci and V. Ferrucci and A. Paoluzzi", title = "Dimension-independent convex-cell based {HPC}: representation scheme and implementation issues", booktitle = "SMA '95: Proceedings of the Third Symposium on Solid Modeling and Applications", pages = "163--174", year = "1995", organization = "ACM", month = "May", note = "held May 17-19, 1995 in Salt Lake City, Utah", } @InProceedings{SCI:Rab1995a, author = "R.D. Rabbitt and J.A. Weiss and G.E. Christensen and M.I. Miller", title = "Mapping of Hyperelastic Deformable Templates Using the Finite Element Method", booktitle = "Proc {SPIE} (Vision Geometry IV)", volume = "2573", pages = "252--265", year = "1995", url = "https://publications.utah.edu/publications/rabbitt95/spie95.pdf", } @InCollection{SCI:Sch95a, author = "J.A. Schmidt and C.R. Johnson and J.C. Eason and R.S. MacLeod", title = "Applications of Automatic Mesh Generation and Adaptive Methods in Computational Medicine", booktitle = "Modeling, Mesh Generation, and AdaptiveMethodsforPartial Differential Equations", pages = "367--390", year = "1995", editor = "I. Babuska and J.E. Flaherty and W.D. Henshaw and J.E. Hopcroft and J.E. Oliger and T. Tezduyar", publisher = "Springer-Verlag", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, scientific computing", url = "https://publications.utah.edu/publications/schmidt95/ima93_5.ps", url = "https://publications.utah.edu/publications/schmidt95/ima93_5.ps.Z", } @InProceedings{SCI:Sch95b, author = "J.A. Schmidt and C.R. Johnson", title = "Defibsim: An Interactive Defibrillation Device Design Tool", booktitle = "{IEEE} Engineering in Medicine and Biology Society 17th Annual International Conference", pages = "305--306", year = "1995", publisher = "{IEEE} Press", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", url = "https://publications.utah.edu/publications/schmidt95/embs95_2.ps", url = "https://publications.utah.edu/publications/schmidt95/embs95_2.ps.Z", } @InProceedings{SCI:Sch95c, author = "J.A. Schmidt and C.R. Johnson and R.S. MacLeod", title = "An Interactive Computer Model for Defibrillation Device Design", booktitle = "International Congress on Electrocardiology", pages = "160--161", year = "1995", publisher = "ICE", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", url = "https://publications.utah.edu/publications/schmidt95/ice95.ps", url = "https://publications.utah.edu/publications/schmidt95/ice95.ps.Z", } @InProceedings{SCI:She95a, author = "H.W. Shen and C.R. Johnson", title = "Sweeping Simplices: A Fast Iso-surface Extraction Algorithm for Unstructured Grids", booktitle = "{IEEE} Visualization `95", pages = "143--150", year = "1995", publisher = "{IEEE} Press", keywords = "scalar field methods, isosurface extraction, scientific computing, scientific visualization", url = "https://publications.utah.edu/publications/shen95/vis95_9.ps", url = "https://publications.utah.edu/publications/shen95/vis95_9.ps.Z", } @InProceedings{SCI:Sle95a, author = "P.A. Sleigh and P.H. Gaskell and M. Berzins and J.M. Ware and N.G. Wright", title = "A Reliable and Accurate Technique for the Modelling of Practically Occurring Open Channel Flow", booktitle = "Proceedings of the Ninth International Conference on Numerical Methods in Laminar and Turbulent Flow", pages = "881--892", year = "1995", publisher = "Pineridge Press", } @InProceedings{SCI:Spe1995a, author = "W. Speares and M. Berzins", title = "A Fast 3-D Unstructured Mesh Adaptation Algorithm with Time-Dependent Upwind Euler Shock Diffraction Calculations", booktitle = "Proc. of 6th International Symposium on Computational Fluid Dynamics", volume = "3", pages = "1181--1188", year = "1995", editor = "M. Hafez and K. Oshima", url = "https://publications.utah.edu/publications/Spe1995a/Speares_CFD1995.pdf", } @TechReport{SCI:Spe1995b, author = "W. Speares and M. Berzins", title = "A 3D Unstructured Mesh Adaption Algorithm for Time Dependent Shock Dominated Problems", number = "95.33", year = "1995", institution = "University of Leeds", type = "School of Computer Studies Research Report", keywords = "meshing", url = "https://publications.utah.edu/publications/speares95/speares95unstructured.pdf", } @InBook{SCI:Tom1995a, author = "A. Tomlin and J.M. Ware and J. Smith and M. Berzins and M.J. Pilling", title = "Efficient High Resolution Methods for Air Pollution Models", booktitle = "International Conference on Air Pollution - Proceedings", volume = "1", pages = "201--208", year = "1995", publisher = "Computational Mechanics Inc", url = "https://publications.utah.edu/publications/Tom1995a/Tomlin_HighResMethAirPollution1995.pdf", } @InProceedings{SCI:Tro95a, author = "R. Troutman and C.D. Hansen", title = "Binary-Swap Shear-Warp Volume Renderer on the T3D", booktitle = "Cray Users Group Conference", pages = "93--102", year = "1995", month = "September", location = "Fairbanks, Ak.", } @InProceedings{SCI:Tun95a, author = "W.B. Tung and C.D. Hansen and D.R. Jones and W.H. Chen and H.A. Al-Sunaidi", title = "Development of an Interactive Reservoir Simulation and Visualization System for a Massively Parallel Processor", booktitle = "5th {ARCHIE} Conference: Visualization Technology to Find and Develop more Oil and Gas", pages = "105--107", year = "1995", month = "May", location = "The Woodlands, Texas", note = "Refereed abstract.", } @Article{SCI:Wal1995b, author = "C. Walshaw and M. Berzins", title = "Dynamic Load-Balancing For {PDE} Solvers On Adaptive Unstructured Meshes", journal = "Concurrency", volume = "7", number = "1", pages = "17--28", year = "1995", url = "https://publications.utah.edu/publications/Wal1995b/2467_001.pdf", } @Article{SCI:Wal95a, author = "C. Walshaw and M. Berzins", title = "Adaptive Time-dependent {CFD} on Distributed Unstructured Meshes", journal = "Parallel Computational Fluid Dynamics: New Trends and Advances", pages = "191--198", year = "1995", publisher = "Elsevier Science", url = "https://publications.utah.edu/publications/walshaw95/WalshawPCFD93.pdf", } @Article{SCI:War1995a, author = "J.M. Ware and M. Berzins", title = "Adaptive Finite Volume Methods for Time-dependent P.D.E.s.", journal = "Modeling, Mesh Generation and Adaptive Numerical Methods for {PDE}s.", volume = "75", pages = "417--430", year = "1995", series = "{IMA} Volumes in Mathematics and Its Applications Series", publisher = "Springer Verlag", url = "https://publications.utah.edu/publications/War1995a/Ware_AdaptiveFiniteVolMeth1995.pdf", } @InCollection{SCI:Wei95a, author = "D.M. Weinstein and C.R. Johnson and J.A. Schmidt", title = "Effects of Adaptive Refinement on the Inverse {EEG} Solution", booktitle = "Experimental and Numerical Methods for Solving Ill-Posed Inverse Problems", journal = "{SPIE}", volume = "2570", pages = "2--11", year = "1995", publisher = "{SPIE}", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, inverse eeg, neuro brain", url = "https://publications.utah.edu/publications/dmw95/spie95.ps", url = "https://publications.utah.edu/publications/dmw95/spie95.ps.Z", } @TechReport{SCI:Wei95b, author = "D.M. Weinstein and C.R. Johnson", title = "Hierarchical Data Structures for Interactive Volume Visualization", number = "UUCS-95-012", year = "1995", institution = "University of Utah", type = "School of Computing Technical Report", address = "Salt Lake City, UT", keywords = "scalar field methods, vector field methods, tensor field methods, parallel visualization", url = "https://publications.utah.edu/publications/dmw95/UUCS-95-012_bw.ps", url = "https://publications.utah.edu/publications/dmw95/UUCS-95-012_bw.ps.Z", url = "https://publications.utah.edu/publications/dmw95/UUCS-95-012_color.ps.Z", } @InProceedings{SCI:Whi95a, author = "R.T. Whitaker", title = "Algorithms for Implicit Deformable Models", booktitle = "Fifth International Conference on Computer Vision'95", pages = "822--827", year = "1995", keywords = "ip image processing signal processing", url = "https://publications.utah.edu/publications/whitaker95/iccv_cam.pdf", url = "https://publications.utah.edu/publications/whitaker95/iccv_cam.ps", } @InProceedings{SCI:Ade94a, author = "S. Adelson and C.D. Hansen", title = "Fast Stereoscopic Images with Ray-Traced Volume Rendering", booktitle = "Symposium on Volume Visualization", pages = "3--9", year = "1994", month = "October", location = "Washington, DC.", keywords = "volume rendering", } @InCollection{SCI:Ber1994a, author = "M. Berzins and J.M. Ware", title = "Reliable Finite Volume Methods for the Navier Stokes Equations.", booktitle = "Numerical methods for the Navier-Stokes equations", number = "47", pages = "1-8", year = "1994", editor = "F.K. Hebeker and R. Rannacher and G. Wittum", series = "Notes on Numerical Fluid Mechanics", publisher = "Springer", url = "https://publications.utah.edu/publications/Ber1994a/heidelb.pdf", } @TechReport{SCI:Git94a, author = "C.S. Gitlin and C.R. Johnson", title = "Techniques for Visualizing 3D Unstructured Meshes", number = "UUCS-94-018", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "computational pde pdes computational partial differential equations evaporation, scientific computing", url = "https://publications.utah.edu/publications/gitlin94/gitlin95_2.ps", url = "https://publications.utah.edu/publications/gitlin94/gitlin95_2.ps.Z", } @Article{SCI:Han94a, author = "C.D. Hansen T.Crockett and S. Whitman", title = "Parallel Rendering", journal = "{IEEE} Parallel and Distributed Technology", volume = "2", number = "2", pages = "7", year = "1994", month = "Summer", note = "Guest editors' introduction", keywords = "parallel visualization", } @Article{SCI:Hen94a, author = "C.S. Henriquez and C.R. Johnson and K.A. Henneberg and L.J. Leon and A.E. Pollard.", title = "Large Scale Biomedical Modeling and Simulation: From Concepts to Results", journal = "Frontiers in Biomedical Computing", year = "1994", editor = "N. Thakor", publisher = "{IEEE} Press", address = "Philadelphia", keywords = ", scientific computing, scientific visualization", } @InProceedings{SCI:Joh94a, author = "C.R. Johnson and S.G. Parker", title = "A Computational Steering Model Applied to Problems in Medicine", booktitle = "Supercomputing 94", pages = "540--549", year = "1994", publisher = "{IEEE} Press", keywords = "scirun, pse, problem solving environments", url = "https://publications.utah.edu/publications/crj94/sc94_9.ps", url = "https://publications.utah.edu/publications/crj94/sc94_9.ps.Z", } @Article{SCI:Joh94e, author = "C.R. Johnson and P. Alfeld", title = "Computational Engineering and Science at the University of Utah", journal = "{IEEE} Computational Science and Engineering", pages = "7--9", year = "1994", keywords = ", scientific computing, scientific visualization, problem solving environments, pse", } @Article{SCI:Ma94a, author = "K.L. Ma and J. Painter and C.D. Hansen and M. Krogh", title = "Parallel Volume Rendering Using Binary-Swap Compositing", journal = "{IEEE} Computer Graphics and Applications", volume = "14", number = "4", pages = "59--68", year = "1994", } @TechReport{SCI:Mac94d, author = "R.S. MacLeod and P.R. Ershler and C.R. Johnson M.A.", title = "Map3d: Scientific Visualization Program for Multichannel Time Series Data on Unstructured, Three-Dimensional Meshes. Program User's Guide", number = "UUCS-94-016", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "computational pde pdes computational partial differential equations evaporation, map3d, cardiac heart, scientific visualization", url = "https://publications.utah.edu/publications/macleod94/tr-map3d.ps", url = "https://publications.utah.edu/publications/macleod94/tr-map3d.ps.Z", } @TechReport{SCI:Mac94e, author = "R.S. MacLeod and C.R. Johnson and P.R. Ershler", title = "Construction of a Human Torso Model from Magnetic Resonance Images for Problems in Computational Electrocardiography", number = "UUCS-94-017", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, computational pde pdes computational partial differential equations evaporation, cardiac heart, scientific computing", url = "https://publications.utah.edu/publications/macleod94/tr-mridoc.ps", url = "https://publications.utah.edu/publications/macleod94/tr-mridoc.ps.Z", } @Article{SCI:Mil1994a, author = "M.I. Miller and S. Joshi and D.R. Maffitt and J.G. McNally and U. Grenander", title = "Membranes, Mitochondria and Amoebae: Shape Models", journal = "Journal of Applied Statistics", volume = "21", number = "1, 2", pages = "141--163", year = "1994", editor = "Kanti Mardia", } @TechReport{SCI:Par94, author = "S.G. Parker and D.M. Weinstein and C.R. Johnson", title = "A Morphing Algorithm for Generating Near Optimal Grids: Applications in Computational Medicine", number = "UUCS-94-014", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "computational pde pdes computational partial differential equations evaporation, scientific computing", url = "https://publications.utah.edu/publications/sparker94/uu_tech.mm.ps", url = "https://publications.utah.edu/publications/sparker94/uu_tech.mm.ps.Z", } @TechReport{SCI:Par94b, author = "S.G. Parker and C.R. Johnson", title = "Interactive Manipulation of Contour Data Using the Layers Program - User Guide", number = "UUCS-94-014", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = ", pse, problem solving environments", url = "https://publications.utah.edu/publications/sparker94/layers.ps", } @Article{SCI:Pen94b, author = "S.V. Pennington and M. Berzins", title = "New {NAG} Library Software for First-Order Partial Differential Equations", journal = "{ACM} Transactions on Mathematical Software", volume = "20", number = "1", pages = "63--99", year = "1994", month = "March", url = "https://publications.utah.edu/publications/berzins94/ACMTOMSp63-pennington.pdf", } @InProceedings{SCI:She94a, author = "H.W. Shen and P.B. Gharpure and C.R. Johnson", title = "Visualization of 3-D wave prorogation in the heart - a new technique", booktitle = "{IEEE} Engineering in Medicine and Biology Society 16th Annual International Conference", pages = "684--685", year = "1994", publisher = "{IEEE} Press", keywords = "scalar field methods, vector field methods, cardiac heart, scientific visualization", } @TechReport{SCI:She94b, author = "H.W. Shen and C.R. Johnson", title = "Semi-automatic image segmentation: A bimodel thresholding approach", number = "UUCS-94-019", year = "1994", institution = "University of Utah", type = "School of Computing Technical Report", keywords = "ip image processing signal processing, segmentation, imaging", url = "https://publications.utah.edu/publications/shen94/shen95_1.ps", } @InProceedings{SCI:She94c, author = "H.W. Shen and C.R. Johnson", title = "Differential volume rendering: A fast alogrithm for scalar field animation", booktitle = "Visualization 94", pages = "180--187", year = "1994", publisher = "{IEEE} Press", keywords = "computational pde pdes computational partial differential equations evaporation, scalar field methods, volume rendering", url = "https://publications.utah.edu/publications/shen94/vis94_7.ps", url = "https://publications.utah.edu/publications/shen94/vis94_7.ps.Z", } @Article{SCI:Str1994a, author = "C.B. Straight and E.P. France and T.D. Rosenberg and L.E. Paulos and J.A. Weiss", title = "Soft Tissue Fixation to Bone: A More Biomechanical Analysis of Spiked Soft Tissue Washers", journal = "American Journal of Sports Medicine", volume = "22", pages = "339--343", year = "1994", } @InProceedings{SCI:Wei94a, author = "D.M. Weinstein and S.G. Parker and C.R. Johnson", title = "A Physically Based Mesh Generation Algorithm: Applications in Computational Medicine", booktitle = "{IEEE} Engineering in Medicine and Biology Society 16th Annual International Conference", pages = "718--719", year = "1994", publisher = "{IEEE} Press", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, scientific computing", url = "https://publications.utah.edu/publications/dmw94/embs_94.mm.ps", url = "https://publications.utah.edu/publications/dmw94/embs_94.mm.ps.Z", } @Article{SCI:Whi94a, author = "S. Whitman and C.D. Hansen and T.W. Crockett", title = "Recent Developments in Parallel Rendering", journal = "{IEEE} Computer Graphics and Applications", volume = "14", number = "4", pages = "21--22", year = "1994", month = "July", note = "Guest editors' introduction", keywords = "parallel visualization", } @InProceedings{SCI:Yu94a, author = "F. Yu and C.R. Johnson", title = "An Automatic Adaptive Refinement and Derefinement Method", booktitle = "Proceedings of the 14th {IMACS} World Congress", pages = "1555--1557", year = "1994", keywords = "computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, scientific computing", } @Article{SCI:Bag1993a, author = "C.M. Bagi and M. Mecham and J.A. Weiss and S.C. Miller", title = "Comparative Morphometric Changes in Rat Cortical Bone Following Ovariectomy and/or Immobilization", journal = "Bone", volume = "14", pages = "877--883", year = "1993", } @InProceedings{SCI:Ber1993a, author = "F. Bernardini and V. Ferrucci and A. Paoluzzi and V. Pascucci", title = "Product Operator on Cell Complexes", booktitle = "SMA '93: Proceedings of the Second Symposium on Solid Modeling and Applications", pages = "43--52", year = "1993", organization = "ACM", month = "May", note = "held May 19-21, 1993 in Montreal, Quebec, Canada", } @Article{SCI:Ber1993b, author = "M. Berzins and J.M. Ware", title = "Reliable Finite Volume Methods for Time-Dependent Partial Differential Equations", journal = "{MAFELAP} 1993 Highlights", pages = "299--306", year = "1993", editor = "J.R. Whiteman and John Wiley", url = "https://publications.utah.edu/publications/Ber1993b/Berzins_MAFELAP1993.pdf", } @Article{SCI:Fra1993a, author = "E.P. France and J.A. Weiss and L.E. Paulos", title = "Allograft Ligament Reconstruction: Biomechanical Issues and Testing", journal = "Sports Medicine and Arthroscopy Review", volume = "1", pages = "47--60", year = "1993", } @InProceedings{SCI:Gha93a, author = "P.B. Gharpure and C.R. Johnson", title = "A 3D Cellular Automata Model of the Heart", booktitle = "{IEEE} Engineering in Medicine and Biology Society 15th Annual International Conference", pages = "752--753", year = "1993", publisher = "{IEEE} Press", keywords = "scalar field methods, cardiac heart", } @Article{SCI:Han93a, author = "C.D. Hansen and S. Tenbrink", title = "The Impact of Gigabit Network Research on Scientific Visualization", journal = "The Visual Computer", volume = "9", number = "6", pages = "318--323", year = "1993", } @InProceedings{SCI:Han93b, author = "C.D. Hansen and M. Krogh", title = "Visualization on Massively Parallel Computers using {CM}/{AVS}", booktitle = "AVS Users Conference", pages = "129--137", year = "1993", month = "May", location = "Orlando, Fl.", } @InProceedings{SCI:Hin93a, author = "P. Hinker and C.D. Hansen", title = "Geometric Optimization", booktitle = "Visualization 1993", pages = "189--195", year = "1993", month = "October", location = "San Jose, Ca.", } @InCollection{SCI:Joh93a, author = "C.R. Johnson and R.S. MacLeod", title = "Inverse Solutions for Electric and Potential Field Imaging", booktitle = "Physiological Imaging, Spectroscopy, andEarlyDetection Diagnostic Methods", volume = "1887", pages = "130--139", year = "1993", editor = "R.L. Barbour and M.J. Carvlin", publisher = "{SPIE}", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scientific visualization", } @Article{SCI:Joh93b, author = "C.R. Johnson and R.S. MacLeod and M.A. Matheson", title = "Computational Medicine: Bioelectric Field Problems", journal = "{IEEE} Computer", volume = "26", number = "26", pages = "59--67", year = "1993", month = "Oct", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scalar field methods, vector field methods", } @InProceedings{SCI:Joh93c, author = "C.R. Johnson and R.S. MacLeod", title = "High Performance Computing in Medicine: Direct and Inverse Problems in Cardiology", booktitle = "{IEEE} Engineering in Medicine and Biology Society 15th Annual International Conference", pages = "582--583", year = "1993", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart, scientific computing", } @Article{SCI:Joh93d, author = "C.R. Johnson and R.S. MacLeod and M.A. Matheson and C. Zimmerman", title = "The Body Electric", journal = "Discover Magazine", pages = "72--77", year = "1993", month = "February", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scalar field methods, vector field methods", } @Article{SCI:Jos1993a, author = "S. Joshi and M. Miller", title = "Maximum a Posteriori Estimation with Good's Roughness for Three-Dimensional Optical-Sectioning Microscopy", journal = "J Opt Soc Am A", volume = "10", number = "5", pages = "1078--1085", year = "1993", month = "May", } @InProceedings{SCI:Ma93a, author = "K.L. Ma and J. Painter and C.D. Hansen and M. Krogh", title = "A Data Distributed, Parallel Algorithm for Ray-Traced Volume Rendering", booktitle = "Proceedings of the Parallel Rendering Symposium 1993", pages = "15--22", year = "1993", month = "October", location = "San Jose, Ca.", keywords = "scalar field methods, volume rendering, parallel visualization", } @TechReport{SCI:Ma93b, author = "K.L. Ma and J.S. Painter and C.D. Hansen and M.F. Krogh", title = "A Data Distributed Parallel Algorithm for Ray-Traced Volume Rendering", pages = "15--22", year = "1993", institution = "Institute for Computer Applications in Science and Engineering, {NASA} Langley Research Center", type = "{ICASE} Report", month = "August", location = "Hampton, VA", keywords = "volume rendering, parallel visualization, interactive rt distributed interactive ray tracing dirt", } @Article{SCI:Mac93, author = "R.S. MacLeod and C.R. Johnson and M.A. Matheson", title = "Visualization of Bioelectric Fields", journal = "{IEEE} Computer Graphics and Applications", volume = "14", pages = "10--12", year = "1993", month = "Jul", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scalar field methods, vector field methods", } @InProceedings{SCI:Mac93b, author = "R.S. MacLeod and C.R. Johnson", title = "Map3d: Interactive Scientific Visualization for Bioengineering Data", booktitle = "Proceedings of the {IEEE} Engineering in Medicine and Biology Society 15th Annual International Conference", pages = "30--31", year = "1993", publisher = "{IEEE} Press", keywords = "map3d, neuro brain, cardiac heart, scientific visualization", url = "https://publications.utah.edu/publications/macleod93/embs93.pdf", } @InProceedings{SCI:Ort93a, author = "F. Ortega and C.D. Hansen and J. Ahrens", title = "Fast Data Parallel Polygon Rendering", booktitle = "Supercomputing 1993", pages = "709--718", year = "1993", month = "November", location = "Portland, Or.", } @InProceedings{SCI:Pao1993a, author = "A. Paoluzzi and V. Pascucci and M. Vicentino", title = "{PLASM} Functional Approach to Design: Representation of Geometry", booktitle = "Proceedings of the Fifth International Conference on Computer-Aided Design Futures ({CAAD} Futures '93)", pages = "127--141", year = "1993", editor = "U. Flemming and S. Van Wyk", publisher = "North-Holland", } @InProceedings{SCI:Pao1993b, author = "A. Paoluzzi and V. Pascucci and M. Vicentino", title = "Un linguaggio di progettazione orientato al Solid Modeling ({A} Design Language oriented to Solid Modeling)", booktitle = "Atti del convegno IcoGraphics '93", pages = "60--66", year = "1993", publisher = "Mondadori Informatica", address = "Milano, Italy", month = "March", note = "In Italian", } @TechReport{SCI:Par93a, author = "J. Parker and M. Berzins and J.M. Cameron and K.A. Collins and C.M. Sawyer", title = "Final Report on SERC/DTI Parallel Applications Programme Collaboration Between EPCC, Rolls Royce ands Leeds University", year = "1993", institution = "Edinburgh Parallel Computing Centre", month = "September", } @Article{SCI:Wal93a, author = "C. Walshaw and M. Berzins", title = "Enhanced Dynamic Load Balancing of Adaptive Unstructured Meshes", journal = "Proc. of 1993 {SIAM} Conference on Parallel Processing for Scientific Computing", volume = "2", pages = "971--978", year = "1993", url = "https://publications.utah.edu/publications/walshaw93/WalshawSIAM93.pdf", } @Article{SCI:And1992a, author = "D.R. Anderson and J.A. Weiss and S. Takai and K.J. Ohland and S.L-Y. Woo", title = "Healing of the Medial Collateral Ligament Following a Triad Injury: A Biomechanical and Histological Study of the Knee in Rabbits", journal = "Journal of Orthopaedic Research", volume = "10", pages = "485--495", year = "1992", } @InProceedings{SCI:Ber1992b, author = "M. Berzins and A.J. Preston and P.M. Dew and L.E. Scales", title = "Towards Efficient {D.A.E.} Solvers for the Solution of Dynamic Simulation Problems", booktitle = "Proc of {I.M.A.} 1989 {O.D.E.} Conference", pages = "299--308", year = "1992", editor = "I. Gladwell and J. Cash and A. Iserles", publisher = "Oxford University Press", isbn = "0-19-853659-3", url = "https://publications.utah.edu/publications/Ber1992b/1926_001-2.pdf", } @Article{SCI:Ber1992c, author = "M. Berzins and R.M. Furzeland", title = "An Adaptive Theta Method for the Solution of Stiff and Non-stiff Differential Equations", journal = "Applied Numerical Mathematics", volume = "9", pages = "1--19", year = "1992", url = "https://publications.utah.edu/publications/Ber1992c/Berzins_Appnumv9theta.pdf", } @Article{SCI:Ber92d, author = "M. Berzins and P.M. Dew and S. Hillen", title = "Exploiting Parallelism for Adaptive {CFD} Software", journal = "Parallelogram", pages = "14--16", year = "1992", month = "February", } @Article{SCI:Bro1992a, author = "K.W. Brodlie and M. Berzins and P.M. Dew and A. Poon and H. Wright", title = "Visualization and its Use in Scientific Computation", journal = "Programming Environments for High-Level Scientific Problem Solving", pages = "293--303", year = "1992", publisher = "Elsevier", url = "https://publications.utah.edu/publications/Bro1992a/Brodlie_VisInSciComp1992.pdf", } @Article{SCI:For92a, author = "D. Forslunk and P. Hinker and C.D. Hansen and W.St. John and S. Tenbrink and J. Brewton", title = "High-speed Networks, Visualization and Massive Parallelism in the Advanced Computing Laboratory", journal = "Computing Systems in Engineering", volume = "3", number = "1-4", year = "1992", } @InProceedings{SCI:Han92a, author = "C.D. Hansen and P. Hinker", title = "Massively Parallel Isosurface Extraction", booktitle = "Visualization 1992", pages = "77--83", year = "1992", month = "October", location = "Boston, Ma.", } @Article{SCI:Han92b, author = "C.D. Hansen and D. Butler", title = "Visualization '91 Workshop Report: Scientific Visualization Environments", journal = "Computer Graphics Quarterly", volume = "26", number = "3", pages = "213--216", year = "1992", month = "August", } @Article{SCI:Joh1992e, author = "C.R. Johnson and R.S. MacLeod and P.R. Ershler", title = "A Computer Model for the Study of Electrical Current Flow in the Human Thorax", journal = "Computers in Biology and Medicine", volume = "22", number = "5", pages = "305--323", year = "1992", publisher = "Elsevier BV", keywords = "scalar field methods, vector field methods, tensor field methods, cardiac heart, scientific visualization", url = "https://publications.utah.edu/publications/Joh1992e/Computer-Model-Thorax-1992.pdf", } @Article{SCI:Joh92b, author = "C.R. Johnson and R.S. MacLeod and M.A. Matheson", title = "Computer Simulations Reveal Complexity of Electrical Activity in the Human Thorax", journal = "Computers in Physics", volume = "6", pages = "230--237", year = "1992", month = "May/June", keywords = "scalar field methods, vector field methods, tensor field methods, cardiac heart", } @InProceedings{SCI:Joh92d, author = "C.R. Johnson and R.S. MacLeod and A. Dutson", title = "Effects of Anistropy and Inhomogeneity on Electrocardiographic Fields: A Finite Element Study", booktitle = "Engineering in Medicine and Biology Society 14th Annual International Conference", pages = "2009--2010", year = "1992", publisher = "{IEEE} Press", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, finite elements, cardiac heart", } @InCollection{SCI:Joh92e, author = "C.R. Johnson and R.S. MacLeod", title = "Computational Studies of Forward and Inverse Problems in Electrocardiology", booktitle = "Biomedical Modeling and Simulation", pages = "283--290", year = "1992", editor = "J. Eisenfeld and D.S. Levine and M. Witten", publisher = "Elsevier Science Publishers", address = "Elsevier, Amsterdam", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", } @InCollection{SCI:Joh92f, author = "C.R. Johnson and R.S. MacLeod", title = "Nonuniform Spatial Mesh Adaption Using a Posteriori Error Estimate: Applications to Forward and Inverse Problems", booktitle = "Adaptive Methods for Partial Differential Equations", volume = "14", pages = "311--326", year = "1992", editor = "J.E. Flaherty and M.S. Shephard", publisher = "Elsevier", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, computational pde pdes computational partial differential equations evaporation, adaptive mesh generation, cardiac heart", url = "https://publications.utah.edu/publications/crj92/mesh_adapt2.ps", url = "https://publications.utah.edu/publications/crj92/mesh_adapt2.ps.Z", } @InProceedings{SCI:Law1992a, author = "J. Lawson and M. Berzins", title = "Towards an Automatic Algorithm for the Numerical Solution of Parabolic {P.D.E.s} Using the Method of Lines", booktitle = "proc of {I.M.A.} 1989 {O.D.E.} Conference", pages = "309--322", year = "1992", editor = "I. Gladwell and J. Cash and A. Iserles", publisher = "Oxford University Press", isbn = "0-19-853659-3", url = "https://publications.utah.edu/publications/Law1992a/Lawson_IMA1989.pdf", } @InProceedings{SCI:Mac92c, author = "R.S. MacLeod and C.R. Johnson and M.A. Matheson", title = "Visualization Tools for Computational Electrocardiology", booktitle = "Visualization in Biomedical Computing", pages = "433--444", year = "1992", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart, pse, problem solving environments", url = "https://publications.utah.edu/publications/macleod92/MacLeod_VBC1992.pdf", } @InProceedings{SCI:Mac92d, author = "R.S. MacLeod and C.R. Johnson and M.A. Matheson", title = "Visualization of cardiac bioelectricity --- a case study", booktitle = "{IEEE} Visualization `92", pages = "411--418", year = "1992", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scalar field methods, vector field methods, cardiac heart", } @InProceedings{SCI:Mac92e, author = "R.S. MacLeod and C.R. Johnson and M.J. Gardner B.M.", title = "Localization of Ischemia during Coronary Angioplasty using Body Surface Potential Mapping and an Electrocardiographic Inverse Solution", booktitle = "Computers in Cardiology", pages = "251--254", year = "1992", publisher = "{IEEE} Press", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", } @InProceedings{SCI:Pas1992a, author = "A. Pascucci and V. Pascucci", title = "Uso del calcolatore nella produzione, elaborazione ed archiviazione di proiezioni parallele (Using the computer for generating, processing and archiving parallel projections)", booktitle = "Atti del convegno L'immagine nel rilievo", pages = "540--561", year = "1992", editor = "C. Cundari", publisher = "Gangemi", } @TechReport{SCI:Wal1992a, author = "C. Walshaw and M. Berzins", title = "Dynamic Load Balancing for PDE Solvers on Adaptive Unstructured Meshes", number = "92.32", year = "1992", institution = "University of Leeds", type = "School of Computer Studies Research Report", month = "December", keywords = "dynamic load balancing, PDE solvers", url = "https://publications.utah.edu/publications/walshaw92/walshaw92dynamic.pdf", } @Article{SCI:War1992a, author = "J.M. Ware and M. Berzins", title = "Finite Volume Techniques for Time-dependent Fluid-Flow Problems", journal = "Advances in Comp. Meths. for P.D.E.s VII", pages = "794--798", year = "1992", school = "Rutgers Univ.", location = "New Jersey", url = "https://publications.utah.edu/publications/War1992a/Ware_AdvComMethPDEsVII1992.pdf", } @InProceedings{SCI:Wil92a, author = "C. Williams and J. Rasure and C.D. Hansen", title = "The State of the Art of Visual Languages for Visualization", booktitle = "Visualization 1992", pages = "202--209", year = "1992", month = "October", location = "Boston, Ma.", } @Article{SCI:Ber1991a, author = "M. Berzins and P. Baehmann and J.E. Flaherty and J. Lawson", title = "Towards An Automated Finite Element Solver for Time-Dependent Fluid-Flow Problems", journal = "MAFELAP 90", pages = "181--188", year = "1991", editor = "J.R. Whiteman", publisher = "Academic Press", url = "https://publications.utah.edu/publications/Ber1991a/Berzins_MAFELAP1991.pdf", } @Article{SCI:Ber1991b, author = "M. Berzins and P.M. Dew", title = "Chebyshev Polynomial Software for Elliptic-Parabolic Systems of {P.D.E.}s", journal = "{A.C.M.} Transactions on Mathematical Software", volume = "17", number = "2", pages = "178--206", year = "1991", month = "June", url = "https://publications.utah.edu/publications/Ber1991b/Berzins_Chebyshev1991.pdf", } @Unpublished{SCI:Ber1991c, author = "M. Berzins", title = "Balancing Space and Time Errors for Spectral Methods used with the Method of Lines for Parabolic equations", year = "1991", url = "https://publications.utah.edu/publications/Ber1991c/4219_001.pdf", } @InProceedings{SCI:Han91a, author = "C.D. Hansen and S. Tenbrink", title = "The Impact of Gigabit Networking on Imaging", booktitle = "Digital Imaging", pages = "191--194", year = "1991", month = "April", location = "Anaheim, Ca.", } @InProceedings{SCI:Joh91a, author = "C.R. Johnson and R.S. MacLeod", title = "Computer Models for Calculating Transthoracic Current Flow", booktitle = "{IEEE} Engineering in Medicine and Biology Society 13th Annual International Conference", pages = "768--769", year = "1991", publisher = "{IEEE} Press", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, scalar field methods, vector field methods, cardiac heart", } @Article{SCI:Law1991a, author = "J. Lawson and M. Berzins and P.M. Dew", title = "Balancing Space and Time Errors in the Method of Lines for Parabolic Equations", journal = "{SIAM} Journal on Scientific Computing", volume = "12", number = "3", pages = "573--594", year = "1991", url = "https://publications.utah.edu/publications/Law1991a/Lawson_JSC1991.pdf", } @InProceedings{SCI:Mac91a, author = "R.S. MacLeod and C.R. Johnson and P.R. Ershler", title = "Construction of an Inhomogeneous Model of the Human Torso for Use in Computational Electrocardiography", booktitle = "{IEEE} Engineering in Medicine and Biology Society 13th Annual International Conference", pages = "688--689", year = "1991", publisher = "{IEEE} Press", } @Article{SCI:Pre1991a, author = "A.J. Preston and M. Berzins", title = "On Algorithms for the Location of Discontinuities for Dynamic Simulation Problems", journal = "Computers in Chemical Engineering", volume = "15", number = "10", pages = "701--713", year = "1991", url = "https://publications.utah.edu/publications/Pre1991a/1935_001-2.pdf", } @Article{SCI:Sus91a, author = "S. Susswein and T.C. Henderson and J. Zachary and C.D. Hansen and P. Hinker and G. Marsden", title = "Parallel Path Consistency", journal = "International Journal of Parallel Programming", volume = "20", number = "6", pages = "453--473", year = "1991", } @Article{SCI:Wei1991a, author = "J.A. Weiss and S.L-Y. Woo and K.J. Ohland and S. Horibe and P.O. Newton", title = "Evaluation of a New Injury Model to Study Medial Collateral Ligament Healing: Primary Repair vs Nonoperative Treatment", journal = "Journal of Orthopaedic Research", volume = "9", pages = "516--528", year = "1991", } @Article{SCI:Zac1991a, author = "O. Zachar and O. Alter", title = "Interpretation of the Curious Results of the New Quantum Formalism of Pre- and Post-Selected Systems", journal = "Foundations of Physics", volume = "21", number = "7", pages = "803-–820", year = "1991", month = "July", } @TechReport{SCI:Alt1990a, author = "O. Alter and O. Zachar", title = "Achilles and the Turtle in the Maze of the Weak Measurement", number = "TAUP 90-1832", year = "1990", institution = "Tel Aviv University", type = "Tel Aviv University Report", url = "https://publications.utah.edu/publications/alter90/Alter_Achilles1990.pdf", } @Article{SCI:Ber1990a, author = "M. Berzins and A.J. Preston and P.M. Dew", title = "Integration Algorithms for the Dynamic Simulation of Production Processes", journal = "Proc of Third European Conference for Mathematics in Industry", pages = "265--271", year = "1990", editor = "J. Manley et al.", publisher = "Kluwer Academic Publishers, Stuttgart.", url = "https://publications.utah.edu/publications/Ber1990a/Berzins_ECMI1990.pdf", } @InProceedings{SCI:Han90a, author = "C.D. Hansen", title = "High-level Tools for Scientific Visualization", booktitle = "Computer Use By Engineers (CUBE) Symposium", year = "1990", month = "November", location = "Sante Fe, NM.", note = "Refereed abstract.", } @InCollection{SCI:Joh90a, author = "C.R. Johnson and A.E. Pollard", title = "Electrical Activation of the Heart: Computational Studies of the Forward and Inverse Problems in Electrocardiography", booktitle = "Computer Assisted Analysis and Modeling", pages = "583--628", year = "1990", publisher = "MIT Press", keywords = "forward problems inverse problems forward simulation inverse solutions finite elements, cardiac heart", } @Article{SCI:Ske1990a, author = "R.D. Skeel and M. Berzins", title = "A Method for the Spatial Discretisation of Parabolic Equations", journal = "{SIAM} Journal on Scientific Computing", volume = "11", number = "1", pages = "1--32", year = "1990", month = "January", url = "https://publications.utah.edu/publications/Ske1990a/Skeel_JSC1990.pdf", } @Article{SCI:Woo1990a, author = "S.L-Y. Woo and K.J. Ohland and J.A. Weiss", title = "The Effects of Aging and Sex on the Biomechanical Properties of the Medial Collateral Ligament", journal = "Mechanisms of Ageing and Development", volume = "56", pages = "129--142", year = "1990", } @Article{SCI:Woo1990b, author = "S.L-Y. Woo and J.A. Weiss and M.A. Gomez and D.A. Hawkins", title = "Measurement of Changes in Ligament Tension with Knee Motion and Skeletal Maturation", journal = "Journal of Biomechanical Engineering", volume = "112", pages = "46--51", year = "1990", } @Article{SCI:Ber1989a, author = "M. Berzins", title = "Developments in {NAG} Library Software for Parabolic Equations", journal = "Scientific Software Systems", pages = "59--72", year = "1989", editor = "J.C. Mason and M.G. Cox", publisher = "Chapman and Hall", month = "July", isbn = "0412345706", url = "https://publications.utah.edu/publications/Ber1989a/Berzins_SciSoftSys1989.pdf", } @Article{SCI:Ber1989b, author = "M. Berzins and P.M. Dew and R.M. Furzeland", title = "Developing Software for Time-Dependent Problems Using the Method of Lines and Differential Algebraic Integrators", journal = "Applied Numerical Mathematics", volume = "5", pages = "375--397", year = "1989", url = "https://publications.utah.edu/publications/Ber1989b/Berzins_Apnumv5SPRINT.pdf", } @Article{SCI:Han89a, author = "C.D. Hansen and T. Henderson", title = "{CAGD}-Based Computer Vision", journal = "{IEEE} Pattern Recognition and Machine Intelligence", volume = "11", number = "10", pages = "1181--1193", year = "1989", month = "November", } @InProceedings{SCI:Hen89a, author = "T. Henderson and C.D. Hansen and R. Grupen", title = "{CAD}-Based 3-D Object Recognition", booktitle = "{IEEE} Systems, Man and Cybernetics Conference", pages = "168--172", year = "1989", month = "November", location = "Boston, Ma.", } @InProceedings{SCI:Aya1988a, author = "N. Ayache and C.D. Hansen", title = "Rectification of Images for Binocular and Trinocular Stereovision", booktitle = "Proceedings of the 9th International Conference on Pattern Recognition", volume = "1", pages = "11--16", year = "1988", month = "November", location = "Rome, Italy", } @Article{SCI:Ber1988b, author = "M. Berzins", title = "Global Error Estimation in the Method of Lines for Parabolic Equations", journal = "{SIAM} Journal on Scientific Computing", volume = "9", pages = "687--703", year = "1988", url = "https://publications.utah.edu/publications/Ber1988b/Berzins_JSC1988.pdf", } @Article{SCI:Ber1988c, author = "M. Berzins and R. Brankin and I. Gladwell", title = "Design of Stiff Integrators in the {N.A.G.} Library", journal = "Signum Bulletin", volume = "23", number = "2", pages = "16--24", year = "1988", month = "April", url = "https://publications.utah.edu/publications/Ber1988c/Berzins_SignumBull1988.pdf", } @Article{SCI:Gru88a, author = "R. Grupen and C.D. Hansen and T. Henderson", title = "Apparent Symmetries in Range Data", journal = "Pattern Recognition Letters", volume = "7", pages = "107--111", year = "1988", month = "February", } @InProceedings{SCI:Han88a, author = "C.D. Hansen and T. Henderson", title = "Automatic Generation of Recognition Strategies", booktitle = "International Conference on Computer Vision", pages = "275--279", year = "1988", month = "December", location = "Tampa, Florida", } @InProceedings{SCI:Han88b, author = "C.D. Hansen and N. Ayache and F. Lustman", title = "Towards Real-time Trinocular Stereo", booktitle = "International Conference on Computer Vision", pages = "129--133", year = "1988", month = "December", location = "Tampa, Florida", } @InProceedings{SCI:Han88c, author = "C.D. Hansen and N. Ayache and Francis Lustman", title = "Efficient Depth Estimation using Trinocular Stereo", booktitle = "{SPIE} Conference on Intelligent Robots", year = "1988", month = "November", location = "Cambridge, Massachusetts", note = "Refereed abstract.", } @Article{SCI:Hen88a, author = "T.C. Henderson and A. Mitiche and E. Weitz and C.D. Hansen", title = "Multisensor Knowledge Systems: Interpreting 3-D structure", journal = "International Journal of Robotics Research, Special Issue on Multisensor Integration", volume = "7", number = "6", pages = "114--137", year = "1988", month = "December", } @InProceedings{SCI:Hen88b, author = "T. Henderson and C.D. Hansen", title = "{CAD}-Based Computer Vision", booktitle = "{SPIE} Conference", year = "1988", month = "April", location = "Orlando, Florida", } @Article{SCI:Ber1987a, author = "M. Berzins and P.M. Dew", title = "A Note on C0 Chebyshev Methods for Parabolic Equations", journal = "I.M.A. Journal of Numerical Analysis", volume = "7", pages = "15--37", year = "1987", url = "https://publications.utah.edu/publications/Ber1987a/Berzins_JNA1987_W_Correction.pdf", } @InProceedings{SCI:Han87a, author = "C.D. Hansen and T. Henderson", title = "{CAGD}-Based Computer Vision", booktitle = "{IEEE} Computer Vision Workshop", pages = "100--106", year = "1987", month = "December", location = "Miami Beach, Florida", } @InCollection{SCI:Hen87a, author = "T. Henderson and C.D. Hansen and Bir Bhanu", title = "Intrinsic Characteristics as the Interface between {CAD} and Machine Vision Systems", booktitle = "Pattern Recognition Theory and Applications", pages = "461--470", year = "1987", editor = "P. Devijver and J. Kittler", series = "NATO-ASI Series", publisher = "Springer-Verlag", } @InProceedings{SCI:Hen87b, author = "T.C. Henderson and C.D. Hansen and A. Samal and C.C. Ho and B. Bhanu", title = "{CAD}-Based Robotics", booktitle = "{IEEE} Conference on Robotics and Automation", pages = "631--635", year = "1987", month = "May", location = "Raleigh, NC.", } @Article{SCI:Ber1986a, author = "M. Berzins", title = "A C1 Interpolant for Codes Based on Backward Differentiation Formulae", journal = "Applied Numerical Mathematics", volume = "2", pages = "109--118", year = "1986", url = "https://publications.utah.edu/publications/Ber1986a/Berzins_Apnumv2C1interp.pdf", } @Article{SCI:Hen86a, author = "T. Henderson and C.D. Hansen and B. Bhanu", title = "The Specification of Distributed Sensing and Control", journal = "Journal of Robotic Systems", volume = "2", number = "4", pages = "387--396", year = "1986", } @InProceedings{SCI:Hen86b, author = "T.C. Henderson and C.D. Hansen and A. Samal and C.C. Ho and B. Bhanu", title = "{CAGD} Based 3-D Visual Recognition", booktitle = "International Conference on Pattern Recognition", pages = "230--232", year = "1986", month = "October", location = "Paris, France", } @Article{SCI:Hen85a, author = "T.C. Henderson and C.D. Hansen and W.S. Fai", title = "Organizing Spatial Data for Robotics Systems", journal = "Computers in Industry", volume = "6", number = "5", pages = "331--344", year = "1985", month = "October", } @InProceedings{SCI:Hen85b, author = "T.C. Henderson and C.D. Hansen and B. Bhanu", title = "A Framework for Distributed Sensing and Control", booktitle = "International Joint Conference on Artificial Intelligence", pages = "1106--1109", year = "1985", month = "August", location = "Los Angeles, Ca.", } @InProceedings{SCI:Hen85c, author = "T.C. Henderson and C.D. Hansen", title = "A Kernel for Multi-sensor Robotics Systems", booktitle = "Proceedings of the {CAD}/{CAM}, Robotics, and Automation Institute and Conference", pages = "217--222", year = "1985", month = "February", location = "Tucson, Arizona", } @InProceedings{SCI:Hen85d, author = "T.C. Henderson and C.D. Hansen and B. Bhanu", title = "The Synthesis of Logical Sensor Specifications", booktitle = "{SPIE} Conference on Intelligent Robots", year = "1985", month = "September", location = "Cambridge, Massachusetts", note = "refereed abstract.", } @Article{SCI:Ber84a, author = "M. Berzins and T.F. Buckley and P.M. Dew", title = "Path Pascal Simulation of Multi-Processor Lattice Architectures for Numerical Computations", journal = "Progress in the Use of Vector and Array processors", year = "1984", editor = "D.J. Paddon and J.D. Pryce", publisher = "Academic Press", } @Article{SCI:Hen84a, author = "T.C. Henderson and W.S. Fai and C.D. Hansen", title = "{MKS}: A Multi-sensor Kernel System", journal = "{IEEE} Transactions on Systems, Man and Cybernetics", volume = "{SMC}-14", number = "5", pages = "784--791", year = "1984", month = "September/October", } @InProceedings{SCI:Hen84b, author = "T.C. Henderson and C.D. Hansen and B. Bhanu", title = "{ASP}: An Algorithm and Sensor Performance Evaluation System", booktitle = "{PECORA} {IX} Conference on Spatial Information Technologies for Remote Sensing Today and Tomorrow", pages = "201-207", year = "1984", month = "October", location = "Sioux Falls, S.D.", } @InProceedings{SCI:Hen84c, author = "T.C. Henderson and E. Shilcrat and C.D. Hansen", title = "A Fault Tolerant Sensor Scheme", booktitle = "International Conference on Pattern Recognition", pages = "663--665", year = "1984", month = "August", location = "Montreal, Canada", } @InProceedings{SCI:Hen84d, author = "T.C. Henderson and B. Bhanu and C.D. Hansen", title = "Distributed Control in the Multi-sensor Kernel System", booktitle = "{SPIE} Conference on Intelligent Robots", pages = "253--255", year = "1984", month = "November", location = "Cambridge, Massachusetts", note = "refereed abstract.", } @Article{SCI:Ber1983a, author = "M. Berzins and P.M. Dew and R.M. Furzeland", title = "Software for time-dependent problems", journal = "{P.D.E.} Software: Modules, Interfaces and Systems; Proc. of 1983 {IFIPS} Conference", year = "1983", editor = "B. Engquist and J. Rice", location = "North Holland", url = "https://publications.utah.edu/publications/Ber1983a/Berzins_PDESoftware1983.pdf", } @Article{SCI:Dew1983a, author = "P.M. Dew and T.F. Buckley and M. Berzins", title = "Systolic Architectures for the Iterative Solution of Sparse Matrix Problems", journal = "Parallel Computing", year = "1983", editor = "U. Schendal", location = "North Holland", url = "https://publications.utah.edu/publications/Dew1983a/Dew_ParallelComp1983.pdf", } @TechReport{SCI:Dew83b, author = "P.M. Dew and T.F. Buckley and M. Berzins", title = "Application of {VLSI} Devices to Computational Problems in the Gas Industry", number = "163", year = "1983", institution = "The University of Leeds", type = "Dept. of Computer Studies Technical Report", } @InProceedings{SCI:Hen83a, author = "T.C. Henderson and C.D. Hansen and E. Shilcrat and W.S. Fai", title = "Logical Sensor Specification", booktitle = "{SPIE} Conference on Intelligent Robots", pages = "578--583", year = "1983", month = "November", location = "Cambridge, Massachusetts", note = "refereed abstract.", } @Article{SCI:Ber1981a, author = "M. Berzins and P.M. Dew", title = "A Generalized Chebyshev Method for Non-linear Parabolic Equations in One Space Variable", journal = "I.M.A. Journal on Numerical Analysis", volume = "1", pages = "469--487", year = "1981", url = "https://publications.utah.edu/publications/Ber1981a/Berzins_JNA1981.pdf", } @Article{SCI:Ber1980a, author = "M. Berzins and P.M. Dew", title = "A note on the extension of the Chebyshev method to quasi-linear parabolic {P.D.E}.s.", journal = "International Journal on Computer Mathematics", volume = "8", pages = "249--263", year = "1980", url = "https://publications.utah.edu/publications/Ber1980a/Berzins_IJCM1980.pdf", }