SCI Publications

2008


V. Pegoraro, I. Wald, S.G. Parker. “Sequential Monte Carlo Adaptation in Low-Anisotropy Participating Media,” In Proceedings of the 19th Eurographics Symposium on Rendering, pp. 1097--1104. 2008.


V. Pegoraro, C. Brownlee, P.S. Shirley, S.G. Parker. “Towards Interactive Global Illumination Effects via Sequential Monte Carlo Adaptation,” In Proceedings of the 3rd IEEE Symposium on Interactive Ray Tracing, pp. 107--114. 2008.


N.S. Phatak, S.A. Maas, A.I. Veress, N.A. Pack, E.V.R. Di Bella, J.A. Weiss. “Strain measurement in the left ventricle during systole with deformable image registration,” In Medical Image Analysis, pp. (in press). 2008.


S. Pizer, M. Styner, T. Terriberry, R. Broadhurst, S. Joshi, E. Chaney, P.T. Fletcher. “Statistical Applications with Deformable M-Reps,” In Computational Imaging and Vision, Springer, pp. 269--308. 2008.
DOI: 10.1007/978-1-4020-8658-8_9


K. Potter, J. Krüger, C.R. Johnson. “Towards the Visualization of Multi-Dimentional Stochastic Distribution Data,” In Proceedings of The International Conference on Computer Graphics and Visualization (IADIS) 2008, pp. 191--196. 2008.


M.W. Prastawa, G. Gerig. “Brain Lesion Segmentation Through Physical Model Estimation,” In Lecture Notes in Computer Science, Vol. 5358, pp. 562--571. 2008.
DOI: 10.1007/978-3-540-89639-5_54


T. Preusser, H. Scharr, K. Krajsek, R.M. Kirby. “Building Blocks for Computer Vision with Stochastic Partial Differential Equations,” In International Journal of Computer Vision, Vol. 80, No. 3, Springer, pp. 375--405. July, 2008.
DOI: 10.1007/s11263-008-0145-5


J.C. Principe, J. Xu, R. Jenssen, A.R.C. Paiva, I. Park. “A Reproducing Kernel Hilbert Space framework for Information-Theoretic Learning,” In IEEE Transactions on Signal Processing, Vol. 56, No. 12, Edited by J.C. Principe, IEEE, pp. 5891--5902. Dec, 2008.
ISBN: 978-1-4419-1569-6
DOI: 10.1109/tsp.2008.2005085


M. Rullmann, A. Anwander, M. Dannhauer, S.K. Warfield, F.H. Duffy, C.H. Wolters. “EEG Source Analysis of Epileptiform Activity Using a 1mm Anisotropic Hexahedra Finite Element Head Model.,” In NeuroImage, Vol. 44, No. 2, pp. 399--410. 2008.
DOI: 10.1016/j.neuroimage.2008.09.009


N. Sadeghi, N.L. Foster, A.Y. Wang, S. Minoshima, A.P. Lieberman, T. Tasdizen. “Automatic Classification of Alzheimer,” In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI 2008): From Nano to Macro, pp. 408--411. 2008.
DOI: 10.1109/ISBI.2008.4541019


E. Santos, L. Lins, J.P. Ahrens, J. Freire, C.T. Silva. “A First Study on Clustering Collections of Workflow Graphs,” In Proceedings of the Second International Provenance and Annotation Workshop (IPAW 2008), pp. 160--173. 2008.


C.E. Scheidegger, D. Koop, E. Santos, H.T. Vo, S.P. Callahan, J. Freire, C.T. Silva.. “Tackling the Provenance Challenge One Layer at a Time,” In Concurrency Computat.: Pract. Exper., Vol. 20, No. 5, pp. 473--483. 2008.


C.E. Scheidegger, H.T. Vo, D. Koop, J. Freire, C.T. Silva. “Querying and Re-Using Workflows with VisTrails,” In Proceedings of the 2008 ACM SIGMOD International Conference on Management of Data, pp. 1251--1254. 2008.
DOI: 10.1145/1376616.1376747


J.A. Schmidt. “Uintah Application Development,” SCI Technical Report, No. UUSCI-2008-005, University of Utah, 2008.


M. Schott, V. Pegoraro, C.D. Hansen, K. Boulanger, J. Stratton, K. Bouatouch. “A Directional Occlusion Shading Model for Interactive Direct Volume Rendering,” SCI Technical Report, No. UUSCI-2008-009, University of Utah Scientific Computing and Imaging Institute, 2008.


C.E. Scheidegger, J. Schreiner, B. Duffy, H. Carr, C.T. Silva. “Revisiting Histograms and Isosurface Statistics,” In IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE Visualization 2008), Vol. 14, No. 6, pp. 1659--1666. 2008.
DOI: 10.1109/TVCG.2008.160


S. Sharma, S. Vakkalanka, G. Gopalakrishnan, R.M. Kirby, R. Thakur, W. Gropp. “A Formal Approach to Detect Functionally Irrelevant Barriers in MPI Programs,” In Proceedings of EuroPVM-MPI 2008, Dublin, Ireland, Vol. 5205, pp. 265--273. September, 2008.
DOI: 10.1007/978-3-540-87475-1_36

ABSTRACT

We examine the unsolved problem of automatically and efficiently detecting functionally irrelevant barriers in MPI programs. A functionally irrelevant barrier is a set of MPI_Barrier calls, one per MPI process, such that their removal does not alter the overall MPI communication structure of the program. Static analysis methods are incapable of solving this problem, as MPI programs can compute many quantities at runtime, including send targets, receive sources, tags, and communicators, and also can have data-dependent control flows. We offer an algorithm called Fib to solve this problem based on dynamic (runtime) analysis. Fib applies to MPI programs that employ 24 widely used two-sided MPI operations. We show that it is sufficient to detect barrier calls whose removal causes a wildcard receive statement placed before or after a barrier to now begin matching a send statement with which it did not match before. Fib determines whether a barrier becomes relevant in any interleaving of the MPI processes of a given MPI program. Since the number of interleavings can grow exponentially with the number of processes, Fib employs a sound method to drastically reduce this number, by computing only the relevant interleavings. We show that many MPI programs do not have data dependent control flows, thus making the results of Fib applicable to all the input data the program can accept.


J.F. Shepherd, C.R. Johnson. “Hexahedral Mesh Generation Constraints,” In Journal of Engineering with Computers, Vol. 24, No. 3, pp. 195--213. 2008.


A.G. Shvedko, M.D. Warren, S. Shome, J.G. Stinstra, A.V. Zaitsev. “Influence of the Skeletal Muscle Activity on Time and Frequency Domain Properties of the Body Surface ECG During Evolving Ventricular Fibrillation in the Pig,” In Resuscitation, Vol. 78, No. 2, pp. 215--223. May 24, 2008.
DOI: 10.1016/j.resuscitation.2008.03.010


C.T. Silva, J. Tohline. “Guest Editorial: Special Issue on Computational Provenance,” In Computing in Science and Engineering, Vol. 10, No. 3, pp. 9--10. 2008.