READMEs shape first impressions of software projects, yet what constitutes a good README varies across audiences and contexts. Research software needs reproducibility details, while open-source libraries might prioritize quick-start guides. Through a design probe, LintMe, we explore how linting can be used to improve READMEs given these diverse contexts, aiding style and content issues while preserving authorial agency. Users create context-specific checks using a lightweight DSL that uses a novel combination of programmatic operations (e.g., for broken links) with LLM-based content evaluation (e.g., for detecting jargon), yielding checks that would be challenging for prior linters. Through a user study (N=11), comparison with naive LLM usage, and an extensibility case study, we find that our design is approachable, flexible, and well matched with the needs of this domain. This work opens the door for linting more complex documentation and other culturally mediated text-based documents.

Synchrotron facilities like the Cornell High Energy Synchrotron Source (CHESS) generate massive data volumes from complex beamline experiments, but face challenges such as limited access time, the need for on-site experiment monitoring, and managing terabytes of data per user group. We present the design, deployment, and evaluation of a framework that addresses CHESS's data acquisition and management issues. Deployed on a secure CHESS server, our system provides real time, web-based tools for remote experiment monitoring and data quality assessment, improving operational efficiency. Implemented across three beamlines (ID3A, ID3B, ID4B), the framework managed 50-100 TB of data and over 10 million files in late 2024. Testing with 43 research groups and 86 dashboards showed reduced overhead, improved accessibility, and streamlined data workflows. Our paper highlights the development, deployment, and evaluation of our framework and its transformative impact on synchrotron data acquisition.

A new release of ChemNetworks (Journal of Computational Chemistry, 2013, 35, 495-505), is described. Updates have made the software performant in supercomputing environments, capable of real-time graph construction and analysis with running simulations, and incorporate graph theory libraries for diverse and customizable analysis workflows. Here, we describe newly implemented algorithms (and examples) in ChemNetworks that include a recursive Z-matrix algorithm for structure identification and graph construction, the incorporation of the DataSpaces data staging framework as one of its optional I/O engines, and user-contributed graph theory analyses that leverage the igraph library. The new release of ChemNetworks better enables ongoing development through community contributions.

Annotation is a central mechanism in visualization design that enables people to communicate key insights. Prior research has provided essential accounts of the visual forms annotations take, but less attention has been paid to the decisions behind them. This paper examines how annotations are designed in practice and how educators reflect on those practices. We conducted a two-phase qualitative study: interviews with ten practitioners from diverse backgrounds revealed the heuristics they draw on when creating annotations, and interviews with seven visualization educators offered complementary perspectives situated within broader concerns of clarity, guidance, and viewer agency. These studies provide a systematic account of annotation design knowledge in professional settings, highlighting the considerations, trade-offs, and contextual judgments that shape the use of annotations. By making this tacit expertise explicit, our work complements prior form-focused studies, strengthens understanding of annotation as a design activity, and points to opportunities for improved tool and guideline support.

Computing is an indispensable component of nearly all technologies and is ubiquitous for vast segments of society. It is also essential to discoveries and innovations in most disciplines. However, while past grand challenges in science have involved computing as one of the tools to address the challenge, these challenges have not been principally about computing. Why has the computing community not yet produced challenges at the scale of grandeur that we see in disciplines such as physics, astronomy, or engineering? How might we go about identifying similarly grand challenges? What are the grand challenges of computing that transcend our discipline's traditional boundaries and have the potential to dramatically improve our understanding of the world and positively shape the future of our society?

There is a significant benefit in us, as a field, taking a more intentional approach to "grand challenges." We are seeking challenge problems that are sufficiently compelling as to both ignite the imagination of computer scientists and draw researchers from other disciplines to computational challenges.

This paper emphasizes the importance, now more than ever, of defining and pursuing grand challenges in computing as a field, and being intentional about translation and realizing its impacts on science and society. Building on lessons from prior grand challenges, the paper explores the nature of a grand challenge today emphasizing both scale and impact, and how the community may tackle such a grand challenge, given a rapidly changing innovation ecosystem in computing. The paper concludes with a call to action for our community to come together to define grand challenges in computing for the next decade and beyond. 

Serverless computing is observing rapid adoption in cloud computing platforms. Prior works have extensively focused on improving the performance of serverless computing platforms via “keeping alive” functions in memory proactively to lower the function execution latency, but the potential environmental sustainability aspects of such performance-enhancing strategies remain underexplored. This work highlights that serverless computing introduces unique carbon footprint sources and trade-offs between performance and sustainability. We present LowCarb, a novel reinforcement learning-based solution that co-optimizes serverless function performance and carbon footprint. LowCarb effectively quantifies and resolves the inherent conflict between performance and sustainability to achieve results within 15% of optimality.

Volume rendering techniques for scientific visualization has recently shifted toward Monte Carlo (MC) methods for their flexibility and robustness, but their use in multi-channel visualization remains underexplored. Traditional multi-channel volume rendering often relies on arbitrary, non-physically-based color blending functions that hinder interpretation. We introduce multi-density Woodcock tracking, a simple extension of Woodcock tracking that leverages an MC method to produce high-fidelity, physically grounded multi-channel renderings without arbitrary blending. By generalizing Woodcock's distance tracking, we provide a unified blending modality that also integrates blending functions from prior works. We further implement effects that enhance boundary and feature recognition. By accumulating frames in real-time, our approach delivers high-quality visualizations with perceptual benefits, demonstrated on diverse datasets. 

High-quality Late Gadolinium Enhancement (LGE) MRI can be helpful for atrial fibrillation management, yet scan quality is frequently compromised by patient motion, irregular breathing, and suboptimal image acquisition timing. While Multiple Instance Learning (MIL) has emerged as a powerful tool for automated quality assessment under weak supervision, current state-of-the-art methods map localized visual evidence to a single, opaque global feature vector. This black box approach fails to provide actionable feedback on specific failure modes, obscuring whether a scan degrades due to motion blur, inadequate contrast, or a lack of anatomical context. In this paper, we propose Adversarial Concept-MIL (AC-MIL), a weakly supervised framework that decomposes global image quality into clinically defined radiological concepts using only volume-level supervision. To capture latent quality variations without entangling predefined concepts, our framework incorporates an unsupervised residual branch guided by an adversarial erasure mechanism to strictly prevent information leakage. Furthermore, we introduce a spatial diversity constraint that penalizes overlap between distinct concept attention maps, ensuring localized and interpretable feature extraction. Extensive experiments on a clinical dataset of atrial LGE-MRI volumes demonstrate that AC-MIL successfully opens the MIL black box, providing highly localized spatial concept maps that allow clinicians to pinpoint the specific causes of non-diagnostic scans. Crucially, our framework achieves this deep clinical transparency while maintaining highly competitive ordinal grading performance against existing baselines. Code to be released on acceptance.

Heavy ball momentum accelerates gradient descent optimization methods, especially within the realm of machine learning. One standard way of employing momentum is with a fixed hyperparameter, which needs much tuning. Relying on a one-size-fits-all hyper-parameter is likely to keep the method from reaching optimum performance. This paper advances a new adaptive momentum to resolve this problem and take the burden of parameter tuning away from the user, inspired by the ideal setting of heavy-ball momentum for quadratics. Our momentum can fully maintain the stability of SGD and Adam with large learning rates so that it converges faster and generalizes better compared to the standard SGD and Adam. We demonstrate the efficacy of the method on various machine learning benchmark tasks, including image classification, language modeling, machine translation, tabular learning, and time-series classification. We also provide convergence guarantees for SGD and Adam with our adaptive momentum.

A substantial body of health research demonstrates a strong link between neighborhood environments and health outcomes. Recently, there has been increasing interest in leveraging advances in computer vision to enable large-scale, systematic characterization of neighborhood built environments. However, the generalizability of vision models across fundamentally different domains remains uncertain, for example, transferring knowledge from ImageNet to the distinct visual characteristics of Google Street View (GSV) imagery. In applied fields such as social health research, several critical questions arise: which models are most appropriate, whether to adopt unsupervised training strategies, what training scale is feasible under computational constraints, and how much such strategies benefit downstream performance. These decisions are often costly and require specialized expertise.

In this paper, we answer these questions through empirical analysis and provide practical insights into how to select and adapt foundation models for datasets with limited size and labels, while leveraging larger, unlabeled datasets through unsupervised training. Our study includes comprehensive quantitative and visual analyses comparing model performance before and after unsupervised adaptation. 

Transcatheter arterial embolization (TAE) is a widely used therapy for treating tumors and vascular abnormalities. A major limitation is the reflux of embolic particles, which can damage healthy tissue and reduce treatment efficacy. Despite technological advances, optimizing particle delivery while minimizing reflux remains a significant challenge. In this work, a novel dual-lumen catheter embolization strategy is proposed. A four-way coupled and multiphase computational fluid dynamics and Lagrangian particle tracking framework in OpenFOAM is used to investigate particle transport and embolization dynamics in idealized hepatic artery geometries. Multiple catheter configurations were evaluated under pulsatile blood flow: the Standard End-Hole Microcatheter (SEHM), catheters with one and three sets of side holes, and a dual-lumen design. An equivalent electrical circuit model was implemented to represent embolization-induced resistance, enabling outlet-specific flow redistribution with progressive occlusion. Results highlight the hemodynamic interactions between blood and saline during embolization and demonstrate that reflux primarily occurs in later stages, as target vessel occlusion intensifies. Side holes on the catheter improve delivery only when injection flow rates are increased to offset leakage, whereas the dual-lumen design enhances delivery efficiency at lower flow rates. This study demonstrates the utility of advanced computational models to assist in the design of microcatheters to minimize or eliminate particle reflux and off-target embolization.

A large body of research shows that the built environment significantly shapes household vehicle miles traveled (VMT), yet little is known about how these effects may differ between electric vehicles (EVs) and conventional vehicles. As EV adoption accelerates, understanding these dynamics is increasingly important for sustainable transportation planning. This study uses data from the 2023 Utah Household Travel Survey to compare how built environmental characteristics influence VMT across vehicle types. A two-stage hurdle framework, implemented with Gradient Boosting Decision Trees (GBDT), is applied to address zero-inflated outcomes and capture nonlinear relationships. Results show that built environment attributes play a larger role in EV adoption and usage, whereas socioeconomic factors remain more influential for conventional vehicles. In particular, income strongly affects EV adoption but has little effect on EV usage, while it remains an important determinant of both adoption and usage for conventional vehicles. The analysis also reveals notable nonlinear effects of the built environment on VMT. For example, the marginal influence of land-use entropy on EV adoption plateaus at a threshold of 0.85, and the effect of transit stop density on EV usage declines sharply before stabilizing at approximately 20 stops per square mile. For planning and policy implementation, these findings highlight the importance of aligning EV infrastructure with local land use conditions and expanding adoption incentives to reach broader households. Overall, the study provides empirical evidence to inform integrated land use and transportation strategies that facilitate sustainable transportation systems.

Scalar fields derived from 3D X-ray CT scans of samples undergoing ex situ processes, such as thermal aging, chemical etching, or mechanical stress, pose unique challenges for characterizing similarities and differences across acquisitions. Typically, a sample A (source) is imaged, removed, and subjected to experimental conditions that alter its microstructure, and then re-imaged as sample B (target) to study the resulting changes. Direct comparison between A and B is rendered impractical if not impossible for current techniques because the challenges of physical and morphological changes are compounded by the effects of geometric misalignment, differences in reconstruction parameters, discretization artifacts, and changes in acquisition settings such as position, beam intensity, or exposure time. To overcome these challenges, we introduce a geometry-rich topological representation that uses the hierarchical Morse complex to capture the structural relationships among regions segmented within each sample and shape descriptors to characterize their metric properties. With this data structure, we cast the similarity problem as a sequence of optimizations, each minimizing differences in structure and geometry at a given resolution. The sequence of optimizations begins by aligning the fine-scale segmentations of the two samples. Following optimization minimizes differences across incrementally coarser levels, producing a fully synchronized hierarchical representation of the two samples. In addition, we introduce a visualization framework that enables interactive exploration and manual editing of the matched hierarchies, thereby allowing an expert user to further improve the quality of the comparison. We apply our workflow to characterize changes in grain structure for energetic materials undergoing aging, match segmentations for materials under different stress conditions, and perform image registration that outperforms state-of-the-art techniques.

Camera-only 3D object detection has emerged as a cost-effective and scalable alternative to LiDAR for autonomous driving, yet existing methods primarily prioritize overall performance while overlooking the severe long-tail imbalance inherent in real-world datasets. In practice, many rare but safety-critical categories such as children, strollers, or emergency vehicles are heavily underrepresented, leading to biased learning and degraded performance. This challenge is further exacerbated by pronounced inter-class ambiguity (e.g., visually similar subclasses) and substantial intra-class diversity (e.g., objects varying widely in appearance, scale, pose, or context), which together hinder reliable long-tail recognition. In this work, we introduce SemLT3D, a Semantic-Guided Expert Distillation framework designed to enrich the representation space for underrepresented classes through semantic priors. SemLT3D consists of: (1) a language-guided mixture-of-experts module that routes 3D queries to specialized experts according to their semantic affinity, enabling the model to better disentangle confusing classes and specialize on tail distributions; and (2) a semantic projection distillation pipeline that aligns 3D queries with CLIP-informed 2D semantics, producing more coherent and discriminative features across diverse visual manifestations. Although motivated by long-tail imbalance, the semantically structured learning in SemLT3D also improves robustness under broader appearance variations and challenging corner cases, offering a principled step toward more reliable camera-only 3D perception.

We extend earlier international efforts to optimise hexahedral-based spectral element methods on GPUs and vectorised CPUs to mixed element meshes additionally involving prismatic, pyramidic, and tetrahedral shapes using tensorial expansions. We demonstrate that common finite element operators (such as the mass and Helmholtz matrices) benefit from alternative implementation strategies depending on the element shape, choice of polynomial order, and system architecture in order to achieve optimal performance. In addition, we introduce a new approach/interpretation to efficiently evaluate more complex operations involving inner products with the derivative of the expansions as part of the integrand such as the stiffness matrix. This approach seeks to maximise operations using the collocation properties of the nodal tensorial expansion associated with classical quadrature rules. Our GPU performance tests demonstrate that the throughput of the Helmholtz operator on tetrahedral elements is at most 2.5 times slower than on hexahedral elements, despite tetrahedra having a factor of six greater floating-point operations.

Digital histopathology whole slide images (WSIs) provide gigapixel-scale high-resolution images that are highly useful for disease diagnosis. However, digital histopathology image analysis faces significant challenges due to the limited training labels, since manually annotating specific regions or small patches cropped from large WSIs requires substantial time and effort. Weakly supervised multiple instance learning (MIL) offers a practical and efficient solution by requiring only bag-level (slide-level) labels, while each bag typically contains multiple instances (patches). Most MIL methods directly use frozen image patch features generated by various image encoders as inputs and primarily focus on feature aggregation. However, feature representation learning for encoder pretraining in MIL settings has largely been neglected.
In our work, we propose a novel feature representation learning framework called weakly supervised contrastive learning (WeakSupCon) that incorporates bag-level label information during training. Our method does not rely on instance-level pseudo-labeling, yet it effectively separates patches with different labels in the feature space. Experimental results demonstrate that the image features generated by our WeakSupCon method lead to improved downstream MIL performance compared to self-supervised contrastive learning approaches in three datasets.

Embolization has evolved from a purely mechanical occlusion technique to a multifunctional platform that supports imaging enhancement and therapeutic functions, including localized drug delivery, immunotherapy, and vascular remodeling. Although reviews on embolic agents have been published, the therapeutic performance of embolic platforms has not yet been systematically examined from a materials perspective linking material design and formation mechanisms to drug loading, release behavior, and therapeutic outcomes. In this review, we discuss the embolic system design principles and mechanisms underlying both clinically used and emerging embolic agents, emphasizing liquid/gel systems and microsphere (MS)-based platforms with integrated therapeutic functionality. We highlight how material design governs catheter delivery, vascular penetration, occlusion stability, and controlled drug release, key factors that govern the performance of all embolic categories. For liquid/gel embolics, we summarize clinical formulations alongside their reported outcomes, and we review emerging systems according to their mechanisms of solidification and biological interaction, including thermoresponsive gels, chemically triggered networks, complex coacervates, and shear-thinning nanocomposites. For MS embolics, we summarize clinically used materials and discuss emerging systems, focusing on how polymer chemistry, cross-linking, and network architecture regulate drug loading and release. Finally, we discuss key translational challenges in the emerging embolic systems and highlight opportunities for future embolic platforms that enable more precise and durable therapeutic control.

Pigmentation is a defining feature of melanocytic cells, and melanogenesis, the biosynthesis and compartmentalization of pigment into lysosome-like melanosomes, is tightly linked to cell state and developmental programs. However, the optical complexity of melanin-rich organelles complicates efforts to study melanogenesis in live cells. Traditional optical measurements conflate pigment absorption with light scattering from intracellular granularity, limiting biological insight. Our pipeline, QUILPEN (QUantitative Imaging of Label-free Pigment-associated ENtities), uses a custom LED-array microscope to independently quantify transmitted, scattered, and absorbed light in live, unlabeled melanocytic cells. QUILPEN builds off our labs prior work in LED-based DPC and Quadrant Dark Field, or QDF, which reduce scatterrelated edge-effects. Our imaging workflow produces temporally resolved, multi-channel images to characterize the biophysical signature at single-cell resolution. Using melanoma cell lines with diverse pigmentation states, we show that acral melanoma cells display tightly correlated scatter and absorption signals, consistent with pigment-laden melanosomes driving both granularity and light absorption. By analyzing well-characterized melanoma models and perturbing pigment synthesis, we define how QUILPEN signals relate to melanin production, melanosome abundance, and general organelle content. Because QUILPEN enables longitudinal tracking without labels, it allows direct measurement of melanosome dynamics within individual cells and lineages. By separately quantifying absorption and scatter, QUILPEN reveals the sources of optical heterogeneity in melanocytic cells and links optical signatures to underlying cell physiology.

Motivated by the need for efficient estimation of conditional expectations, we consider a least-squares function approximation problem with heavily polluted data. Existing methods that are powerful in the small noise regime are suboptimal when large noise is present. We propose a hybrid approach that combines Christoffel sampling with certain types of optimal experimental design to address this issue. We show that the proposed algorithm enjoys appropriate optimality properties for both sample point generation and noise mollification, leading to improved computational efficiency and sample complexity compared to existing methods. We also extend the algorithm to convex-constrained settings with similar theoretical guarantees. When the target function is defined as the expectation of a random field, we extend our approach to leverage adaptive random subspaces and establish results on the approximation capacity of the adaptive procedure. Our theoretical findings are supported by numerical studies on both synthetic data and on a more challenging stochastic simulation problem in computational finance.

As the demand for intelligent systems grows, leveraging edge learning and autonomic self-management offers significant benefits for supporting real-time data analysis and resource management in edge environments. We describe and evaluate four distinct task allocation scenarios to demonstrate the autonomics for edge resources management: random execution, autonomic broker-based scheduling, priority-driven execution, and energy-aware allocation. Our experiments reveal that while prioritization-based scheduling minimizes execution times by aligning with task criticality, the energy-aware approach presents a sustainable alternative. This method dynamically adapts task execution based on renewable energy availability, promoting environmentally conscious energy management without compromising operational efficiency. By harnessing renewable energy signals, our findings highlight the potential of edge autonomics to achieve a balance between performance, resource optimization and sustainability. This work demonstrates how intelligent edge-cloud integration can foster resilient smart building infrastructures that meet the challenges of modern computing paradigms.